https://github.com/cran/aster
Tip revision: c651dababa29dbc9b4cc34906c535a0ed860432b authored by Charles J. Geyer on 19 July 2005, 00:00:00 UTC
version 0.2
version 0.2
Tip revision: c651dab
aster.R
library(aster)
set.seed(42)
nind <- 25
nnode <- 5
ncoef <- nnode + 1
famnam <- families()
fam <- c(1, 1, 2, 3, 3)
print(famnam[fam])
pred <- c(0, 1, 1, 2, 3)
print(pred)
modmat <- array(0, c(nind, nnode, ncoef))
modmat[ , , 1] <- 1
for (i in 2:nnode)
modmat[ , i, i] <- 1
modmat[ , , ncoef] <- rnorm(nind * nnode)
beta <- rnorm(ncoef) / 10
phi <- matrix(modmat, ncol = ncoef) %*% beta
phi <- matrix(phi, ncol = nnode)
theta <- .C("aster_phi2theta",
nind = as.integer(nind),
nnode = as.integer(nnode),
pred = as.integer(pred),
fam = as.integer(fam),
phi = as.double(phi),
theta = matrix(as.double(0), nind, nnode))$theta
root <- sample(1:3, nind * nnode, replace = TRUE)
root <- matrix(root, nind, nnode)
x <- raster(theta, pred, fam, root)
out1 <- aster(x, root, pred, fam, modmat, type = "unco", method = "nlm")
out2 <- aster(x, root, pred, fam, modmat, type = "unco", method = "CG")
out3 <- aster(x, root, pred, fam, modmat, type = "unco", method = "L-B")
all.equal(out1$coefficients, out2$coefficients)
all.equal(out2$coefficients, out3$coefficients)
all.equal(out3$coefficients, out1$coefficients)
print(out1$coefficients)
out1 <- aster(x, root, pred, fam, modmat, type = "cond", method = "nlm")
out2 <- aster(x, root, pred, fam, modmat, type = "cond", method = "CG")
out3 <- aster(x, root, pred, fam, modmat, type = "cond", method = "L-B")
all.equal(out1$coefficients, out2$coefficients)
all.equal(out2$coefficients, out3$coefficients)
all.equal(out3$coefficients, out1$coefficients)
print(out1$coefficients)