# Generated by roxygen2: do not edit by hand

export("A1<-")
export("A2<-")
export("QCcode<-")
export(A1)
export(A2)
export(AB)
export(Band)
export(Band.gene)
export(Band.pos)
export(ChipInfo)
export(Chr)
export(ENS.to.GENE)
export(GENE.to.ENS)
export(Gene.pos)
export(Pos)
export(Pos.band)
export(Pos.gene)
export(QCcode)
export(QCfail)
export(QCpass)
export(as)
export(chip)
export(chip.support)
export(chipId)
export(chrNums)
export(chrSel)
export(chrSelect)
export(chrm)
export(compact.gene.list)
export(conv.36.37)
export(conv.37.36)
export(conv.37.38)
export(conv.38.37)
export(convTo36)
export(convTo37)
export(convTo38)
export(convert.textpos.to.data)
export(df.to.GRanges)
export(df.to.ranged)
export(endSnp)
export(expand.nsnp)
export(force.chr.pos)
export(get.GO.for.genes)
export(get.centromere.locs)
export(get.chr.lens)
export(get.cyto)
export(get.exon.annot)
export(get.gene.annot)
export(get.genic.subset)
export(get.immunobase.snps)
export(get.immunog.locs)
export(get.nearby.snp.lists)
export(get.recombination.map)
export(get.t1d.regions)
export(get.t1d.subset)
export(get.telomere.locs)
export(id.to.rs)
export(ids.by.pos)
export(in.window)
export(invGRanges)
export(lambda_1000)
export(makeGRanges)
export(manifest)
export(meta.me)
export(nearest.gene)
export(nearest.snp)
export(plotGeneAnnot)
export(plotRanges)
export(rangeSnp)
export(ranged.to.data.frame)
export(ranged.to.txt)
export(recomWindow)
export(rranges)
export(rs.id)
export(rs.to.id)
export(select.autosomes)
export(set.chr.to.char)
export(set.chr.to.numeric)
export(showChipInfo)
export(snps.in.range)
export(startSnp)
export(ucsc)
export(ucsc.sanitizer)
exportClasses(ChipInfo)
exportMethods("A1<-")
exportMethods("A2<-")
exportMethods("[[")
exportMethods(A1)
exportMethods(A2)
exportMethods(QCcode)
exportMethods(QCfail)
exportMethods(QCpass)
exportMethods(chip)
exportMethods(chipId)
exportMethods(chrIndices)
exportMethods(chrInfo)
exportMethods(chrNames)
exportMethods(chrSel)
exportMethods(chrm)
exportMethods(convTo36)
exportMethods(convTo37)
exportMethods(convTo38)
exportMethods(dim)
exportMethods(initialize)
exportMethods(length)
exportMethods(plot)
exportMethods(print)
exportMethods(rownames)
exportMethods(rs.id)
exportMethods(show)
exportMethods(toGenomeOrder)
exportMethods(ucsc)
import(BiocGenerics)
import(NCmisc)
import(Rcpp)
import(S4Vectors)
importClassesFrom("biomaRt",Mart)
importClassesFrom("rtracklayer",ChainFile)
importClassesFrom(GenomicRanges,GNCList)
importClassesFrom(GenomicRanges,GRanges)
importClassesFrom(GenomicRanges,GenomicRanges)
importClassesFrom(GenomicRanges,GenomicRangesORmissing)
importClassesFrom(IRanges,RangedData)
importFrom("GenomicFeatures",exonsBy)
importFrom("GenomicFeatures",makeTxDbFromUCSC)
importFrom("GenomicFeatures",transcriptsBy)
importFrom("biomaRt",getBM)
importFrom("biomaRt",useDataset)
importFrom("biomaRt",useMart)
importFrom("genoset","chrNames<-")
importFrom("genoset","isGenomeOrder")
importFrom("genoset","locData")
importFrom("genoset","locData<-")
importFrom("genoset","toGenomeOrder")
importFrom("genoset",chr)
importFrom("genoset",chrIndices)
importFrom("genoset",chrInfo)
importFrom("genoset",chrNames)
importFrom("genoset",chrOrder)
importFrom(BiocInstaller,biocVersion)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(IRanges,"%over%")
importFrom(IRanges,IRanges)
importFrom(IRanges,RangedData)
importFrom(IRanges,showAsCell)
importFrom(genoset,chr)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,abline)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,prototype)
importFrom(methods,representation)
importFrom(methods,setAs)
importFrom(methods,setClass)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(methods,setValidity)
importFrom(parallel,mclapply)
importFrom(reader,cat.path)
importFrom(reader,reader)
importFrom(reader,shift.rownames)
importFrom(stats,family)
importFrom(stats,median)
importFrom(stats,pnorm)
importFrom(stats,pt)
importFrom(stats,qnorm)
importFrom(stats,rchisq)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(utils,capture.output)
importFrom(utils,download.file)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(utils,write.table)
importMethodsFrom("GenomicFeatures",as.list)
importMethodsFrom("GenomicFeatures",exonsBy)
importMethodsFrom("GenomicFeatures",transcriptsBy)
importMethodsFrom("genoset","genome<-")
importMethodsFrom("genoset",chrIndices)
importMethodsFrom("genoset",chrInfo)
importMethodsFrom("genoset",chrNames)
importMethodsFrom("genoset",genome)
importMethodsFrom("genoset",toGenomeOrder)
importMethodsFrom("rtracklayer",import.chain)
importMethodsFrom("rtracklayer",liftOver)
importMethodsFrom(GenomeInfoDb,"genome")
importMethodsFrom(GenomeInfoDb,"genome<-")
importMethodsFrom(GenomeInfoDb,"seqinfo<-")
importMethodsFrom(GenomeInfoDb,"seqlevels")
importMethodsFrom(GenomeInfoDb,"seqlevels<-")
importMethodsFrom(GenomeInfoDb,"seqnames<-")
importMethodsFrom(GenomeInfoDb,seqinfo)
importMethodsFrom(GenomeInfoDb,seqnames)
importMethodsFrom(GenomicRanges,"$")
importMethodsFrom(GenomicRanges,"$<-")
importMethodsFrom(GenomicRanges,"[")
importMethodsFrom(GenomicRanges,"[<-")
importMethodsFrom(GenomicRanges,"[[")
importMethodsFrom(GenomicRanges,"[[<-")
importMethodsFrom(GenomicRanges,"dimnames<-")
importMethodsFrom(GenomicRanges,"mcols<-")
importMethodsFrom(GenomicRanges,"names<-")
importMethodsFrom(GenomicRanges,cbind)
importMethodsFrom(GenomicRanges,end)
importMethodsFrom(GenomicRanges,findOverlaps)
importMethodsFrom(GenomicRanges,length)
importMethodsFrom(GenomicRanges,mcols)
importMethodsFrom(GenomicRanges,names)
importMethodsFrom(GenomicRanges,rbind)
importMethodsFrom(GenomicRanges,show)
importMethodsFrom(GenomicRanges,start)
importMethodsFrom(GenomicRanges,strand)
importMethodsFrom(GenomicRanges,subsetByOverlaps)
importMethodsFrom(GenomicRanges,width)
importMethodsFrom(IRanges,"colnames<-")
importMethodsFrom(IRanges,"end<-")
importMethodsFrom(IRanges,"ranges<-")
importMethodsFrom(IRanges,"rownames<-")
importMethodsFrom(IRanges,"start<-")
importMethodsFrom(IRanges,"universe<-")
importMethodsFrom(IRanges,"width<-")
importMethodsFrom(IRanges,as.data.frame)
importMethodsFrom(IRanges,as.list)
importMethodsFrom(IRanges,as.matrix)
importMethodsFrom(IRanges,cbind)
importMethodsFrom(IRanges,colnames)
importMethodsFrom(IRanges,elementLengths)
importMethodsFrom(IRanges,end)
importMethodsFrom(IRanges,findOverlaps)
importMethodsFrom(IRanges,flank)
importMethodsFrom(IRanges,gsub)
importMethodsFrom(IRanges,intersect)
importMethodsFrom(IRanges,lapply)
importMethodsFrom(IRanges,mean)
importMethodsFrom(IRanges,ncol)
importMethodsFrom(IRanges,nrow)
importMethodsFrom(IRanges,order)
importMethodsFrom(IRanges,queryHits)
importMethodsFrom(IRanges,ranges)
importMethodsFrom(IRanges,rbind)
importMethodsFrom(IRanges,reduce)
importMethodsFrom(IRanges,resize)
importMethodsFrom(IRanges,rownames)
importMethodsFrom(IRanges,runLength)
importMethodsFrom(IRanges,showAsCell)
importMethodsFrom(IRanges,space)
importMethodsFrom(IRanges,start)
importMethodsFrom(IRanges,subjectHits)
importMethodsFrom(IRanges,subsetByOverlaps)
importMethodsFrom(IRanges,universe)
importMethodsFrom(IRanges,unlist)
importMethodsFrom(IRanges,width)
importMethodsFrom(genoset,chr)