https://github.com/cran/spatstat
Tip revision: 9a082e1ec5dd2d53051dc235b18e71b2227f5dca authored by Adrian Baddeley on 17 June 2011, 08:36:15 UTC
version 1.22-3
version 1.22-3
Tip revision: 9a082e1
rNeymanScott.Rd
\name{rNeymanScott}
\alias{rNeymanScott}
\title{Simulate Neyman-Scott Process}
\description{
Generate a random point pattern, a realisation of the
Neyman-Scott cluster process.
}
\usage{
rNeymanScott(kappa, rmax, rcluster, win = owin(c(0,1),c(0,1)), \dots, lmax=NULL)
}
\arguments{
\item{kappa}{
Intensity of the Poisson process of cluster centres.
A single positive number, a function, or a pixel image.
}
\item{rmax}{
Maximum radius of a random cluster.
}
\item{rcluster}{
A function which generates random clusters.
}
\item{win}{
Window in which to simulate the pattern.
An object of class \code{"owin"}
or something acceptable to \code{\link{as.owin}}.
}
\item{\dots}{
Arguments passed to \code{rcluster}
}
\item{lmax}{
Optional. Upper bound on the values of \code{kappa}
when \code{kappa} is a function or pixel image.
}
}
\value{
The simulated point pattern (an object of class \code{"ppp"}).
Additionally, some intermediate results of the simulation are
returned as attributes of this point pattern: see Details.
}
\details{
This algorithm generates a realisation of the
general Neyman-Scott process, with the cluster mechanism
given by the function \code{rcluster}.
The clusters must have a finite maximum possible radius \code{rmax}.
First, the algorithm
generates a Poisson point process of ``parent'' points
with intensity \code{kappa}. Here \code{kappa} may be a single
positive number, a function \code{kappa(x, y)}, or a pixel image
object of class \code{"im"} (see \code{\link{im.object}}).
See \code{\link{rpoispp}} for details.
Second, each parent point is
replaced by a random cluster of points, created by calling the
function \code{rcluster}.
These clusters are combined together to yield a single point pattern
which is then returned as the result of \code{rNeymanScott}.
The function \code{rcluster} should expect to be called as
\code{rcluster(xp[i],yp[i],\dots)} for each parent point at a location
\code{(xp[i],yp[i])}. The return value of \code{rcluster}
should be a list with elements
\code{x,y} which are vectors of equal length giving the absolute
\eqn{x} and \code{y} coordinates of the points in the cluster.
If the return value of \code{rcluster} is a point pattern (object of
class \code{"ppp"}) then it may have marks. The result of
\code{rNeymanScott} will then be a marked point pattern.
If required, the intermediate stages of the simulation (the parents
and the individual clusters) can also be extracted from
the return value of \code{rNeymanScott}
through the attributes \code{"parents"} and \code{"parentid"}.
The attribute \code{"parents"} is the point pattern of parent points.
The attribute \code{"parentid"} is an integer vector specifying
the parent for each of the points in the simulated pattern.
}
\seealso{
\code{\link{rpoispp}},
\code{\link{rThomas}},
\code{\link{rGaussPoisson}},
\code{\link{rMatClust}}
}
\examples{
# each cluster consist of 10 points in a disc of radius 0.2
nclust <- function(x0, y0, radius, n) {
return(runifdisc(n, radius, centre=c(x0, y0)))
}
plot(rNeymanScott(10, 0.2, nclust, radius=0.2, n=5))
# multitype Neyman-Scott process (each cluster is a multitype process)
nclust2 <- function(x0, y0, radius, n, types=c("a", "b")) {
X <- runifdisc(n, radius, centre=c(x0, y0))
M <- sample(types, n, replace=TRUE)
marks(X) <- M
return(X)
}
plot(rNeymanScott(15,0.1,nclust2, radius=0.1, n=5))
}
\author{Adrian Baddeley
\email{Adrian.Baddeley@csiro.au}
\url{http://www.maths.uwa.edu.au/~adrian/}
and Rolf Turner
\email{r.turner@auckland.ac.nz}
}
\keyword{spatial}
\keyword{datagen}