https://github.com/cran/spatstat
Tip revision: 9f84c79450f33061219ca8cc5518816c31a9be64 authored by Adrian Baddeley on 21 November 2017, 07:39:44 UTC
version 1.54-0
version 1.54-0
Tip revision: 9f84c79
straussm.c
#include <R.h>
#include <math.h>
#include "methas.h"
#include "dist2.h"
/* for debugging code, include #define DEBUG 1 */
/* Conditional intensity computation for Multitype Strauss process */
/* NOTE: types (marks) are numbered from 0 to ntypes-1 */
/* Storage of parameters and precomputed/auxiliary data */
typedef struct MultiStrauss {
int ntypes;
double *gamma; /* gamma[i,j] = gamma[i+ntypes*j] for i,j = 0... ntypes-1 */
double *rad; /* rad[i,j] = rad[j+ntypes*i] for i,j = 0... ntypes-1 */
double *rad2; /* squared radii */
double range2; /* square of interaction range */
double *loggamma; /* logs of gamma[i,j] */
double *period;
int *hard; /* hard[i,j] = 1 if gamma[i,j] ~~ 0 */
int *kount; /* space for kounting pairs of each type */
int per;
} MultiStrauss;
/* initialiser function */
Cdata *straussminit(state, model, algo)
State state;
Model model;
Algor algo;
{
int i, j, ntypes, n2, hard;
double g, r, r2, logg, range2;
MultiStrauss *multistrauss;
multistrauss = (MultiStrauss *) R_alloc(1, sizeof(MultiStrauss));
multistrauss->ntypes = ntypes = model.ntypes;
n2 = ntypes * ntypes;
#ifdef DEBUG
Rprintf("initialising space for %d types\n", ntypes);
#endif
/* Allocate space for parameters */
multistrauss->gamma = (double *) R_alloc((size_t) n2, sizeof(double));
multistrauss->rad = (double *) R_alloc((size_t) n2, sizeof(double));
/* Allocate space for transformed parameters */
multistrauss->rad2 = (double *) R_alloc((size_t) n2, sizeof(double));
multistrauss->loggamma = (double *) R_alloc((size_t) n2, sizeof(double));
multistrauss->hard = (int *) R_alloc((size_t) n2, sizeof(int));
/* Allocate scratch space for counts of each pair of types */
multistrauss->kount = (int *) R_alloc((size_t) n2, sizeof(int));
/* Copy and process model parameters*/
/* ipar will contain n^2 gamma values followed by n^2 values of r */
range2 = 0.0;
for(i = 0; i < ntypes; i++) {
for(j = 0; j < ntypes; j++) {
g = model.ipar[i + j*ntypes];
r = model.ipar[n2 + i + j*ntypes];
r2 = r * r;
hard = (g < DOUBLE_EPS);
logg = (hard) ? 0 : log(g);
MAT(multistrauss->gamma, i, j, ntypes) = g;
MAT(multistrauss->rad, i, j, ntypes) = r;
MAT(multistrauss->hard, i, j, ntypes) = hard;
MAT(multistrauss->loggamma, i, j, ntypes) = logg;
MAT(multistrauss->rad2, i, j, ntypes) = r2;
if(r2 > range2) range2 = r2;
}
}
multistrauss->range2 = range2;
/* periodic boundary conditions? */
multistrauss->period = model.period;
multistrauss->per = (model.period[0] > 0.0);
#ifdef DEBUG
Rprintf("end initialiser\n");
#endif
return((Cdata *) multistrauss);
}
/* conditional intensity evaluator */
double straussmcif(prop, state, cdata)
Propo prop;
State state;
Cdata *cdata;
{
int npts, ntypes, kount, ix, ixp1, j, mrk, mrkj, m1, m2;
int *marks;
double *x, *y;
double u, v, lg;
double d2, cifval;
double range2;
double *period;
MultiStrauss *multistrauss;
DECLARE_CLOSE_D2_VARS;
multistrauss = (MultiStrauss *) cdata;
range2 = multistrauss->range2;
period = multistrauss->period;
u = prop.u;
v = prop.v;
mrk = prop.mrk;
ix = prop.ix;
x = state.x;
y = state.y;
marks = state.marks;
npts = state.npts;
#ifdef DEBUG
Rprintf("computing cif: u=%lf, v=%lf, mrk=%d\n", u, v, mrk);
#endif
cifval = 1.0;
if(npts == 0)
return(cifval);
ntypes = multistrauss->ntypes;
#ifdef DEBUG
Rprintf("initialising pair counts\n");
#endif
/* initialise pair counts */
for(m1 = 0; m1 < ntypes; m1++)
for(m2 = 0; m2 < ntypes; m2++)
MAT(multistrauss->kount, m1, m2, ntypes) = 0;
/* compile pair counts */
#ifdef DEBUG
Rprintf("compiling pair counts\n");
#endif
ixp1 = ix+1;
/* If ix = NONE = -1, then ixp1 = 0 is correct */
if(multistrauss->per) { /* periodic distance */
if(ix > 0) {
for(j=0; j < ix; j++) {
if(CLOSE_PERIODIC_D2(u,v,x[j],y[j],period,range2,d2)) {
mrkj = marks[j];
if(d2 < MAT(multistrauss->rad2, mrk, mrkj, ntypes))
MAT(multistrauss->kount, mrk, mrkj, ntypes)++;
}
}
}
if(ixp1 < npts) {
for(j=ixp1; j<npts; j++) {
if(CLOSE_PERIODIC_D2(u,v,x[j],y[j],period,range2,d2)) {
mrkj = marks[j];
if(d2 < MAT(multistrauss->rad2, mrk, mrkj, ntypes))
MAT(multistrauss->kount, mrk, mrkj, ntypes)++;
}
}
}
}
else { /* Euclidean distance */
if(ix > 0) {
for(j=0; j < ix; j++) {
if(CLOSE_D2(u, v, x[j], y[j], range2, d2)) {
mrkj = marks[j];
if(d2 < MAT(multistrauss->rad2, mrk, mrkj, ntypes))
MAT(multistrauss->kount, mrk, mrkj, ntypes)++;
}
}
}
if(ixp1 < npts) {
for(j=ixp1; j<npts; j++) {
if(CLOSE_D2(u, v, x[j], y[j], range2, d2)) {
mrkj = marks[j];
if(d2 < MAT(multistrauss->rad2, mrk, mrkj, ntypes))
MAT(multistrauss->kount, mrk, mrkj, ntypes)++;
}
}
}
}
#ifdef DEBUG
Rprintf("multiplying cif factors\n");
#endif
/* multiply cif value by pair potential */
for(m1 = 0; m1 < ntypes; m1++) {
for(m2 = 0; m2 < ntypes; m2++) {
kount = MAT(multistrauss->kount, m1, m2, ntypes);
if(MAT(multistrauss->hard, m1, m2, ntypes)) {
if(kount > 0) {
cifval = 0.0;
return(cifval);
}
} else {
lg = MAT(multistrauss->loggamma, m1, m2, ntypes);
cifval *= exp(lg * kount);
}
}
}
#ifdef DEBUG
Rprintf("returning positive cif\n");
#endif
return cifval;
}
Cifns MultiStraussCifns = { &straussminit, &straussmcif, (updafunptr) NULL, YES};