f931b0675079fa03e008404cd1e614d0 *DESCRIPTION
4c2e0087cf55a7a29c6c459e970907ca *NAMESPACE
7b8f4a43f713baefec20ae29d4c740c5 *R/AFtest.R
f661ff0a09feeaf8e22c65a349fc2bfd *R/CheckRoots.R
e0dffd8eb7ee0c4d86888f36613da04b *R/Chisquare.R
bfe799f21c98220eab0cf2e14d765613 *R/Chisquare.x.R
a1bfa645ffbbec351654a8ea80c866c4 *R/Chisquarex.R
5f40db5f9a66410ded006185537f899b *R/CombineChisquare.R
6df458bbbbd8abd38aa8fa2e2945f58c *R/CombineExact.R
2510018fa8f5d863ca8e132c36f0ffa6 *R/CompProbDown.R
64709dc8a0e9c49057f495fa3b94ca02 *R/CompProbDownPower.R
7fc991a9da8179ddfb7b81f2f7d9051c *R/CompProbUp.R
122d1857aef1f5cc1229c783b24b9cff *R/CompProbUpPower.R
64929e082cd0edc47e2e25c410bb845c *R/CritSam.R
77d651e622de17beb732a2f9e1c8052b *R/DnegLow.R
e01f5ca15bb9e429abadfaadfc1342a8 *R/DnegUp.R
1a54632ccfaf1d4083422ce77459d511 *R/DposLow.R
b465fee04d8feafa66cda0228bed84f2 *R/DposUp.R
0ca54438d813201afb2d70b470c955ab *R/EAFExact.R
8fe4a22ac2283c526cc980b4b277b7cd *R/FtoTheta.R
9ab8dd3e15271a5eb1d91a34e287707e *R/GenerateSamples.R
273787f3107a20f99673aa19edc5c06b *R/H0.R
385526e27537079c6c711c15bb77254f *R/H1.R
e819937ee07e8ac1989aaec353433802 *R/H2.R
c4dccac25d9a15afde6e4b353844980c *R/H3.R
88e625e256d48c310a30c27bf8d6990e *R/HW.chi.mat.R
d073dca432a8f3ec8c54ec605e693a42 *R/HWABO.R
aae94cd194001e362f1f7785bfad6fa3 *R/HWAIC.R
07c8ad6e6fdc384809172c72ef32225c *R/HWAlltests.R
ada525fc9c7993aa78e83120c6967fd1 *R/HWAlr.R
5f587b1c8b3a668faed3cae80e356d36 *R/HWAlrPlot.R
5bd523c4c71bbf7df9c3983904f7e976 *R/HWChisq.R
0e5c5e3a267d272fd27dd8cf8a40b06f *R/HWChisqLowerl.R
0353f85263bd08738992bb73f9981164 *R/HWChisqMat.R
1b6de0328f09a11bf0c2423bdba222c3 *R/HWChisqStats.R
d3223919099e832b1999126d570a3f3a *R/HWChisqUpperl.R
d77c149ae81a2100c488125352907df1 *R/HWChisqccCurve.R
8b9a2a7720fe28446cc9f971c161d4f6 *R/HWClo.R
a296fe086fafedb5d6e442f01846d88a *R/HWClr.R
9643bd63ed2abe04ae56d28f94611df4 *R/HWClrPlot.R
02f0bc2a7ca90f1a3282cd461433db11 *R/HWCondProbAB.R
dab520dbce398600437119a5a55f394c *R/HWD.R
579c763ec21fff00f37ef9353bb9ce78 *R/HWData.R
a145dc84a575a3573ecf6903f377a121 *R/HWExact.R
3fe368528caac56e0ac5b78ca4ff3fa4 *R/HWExactMat.R
dfc68966cdfedf45ab0292ac691b0393 *R/HWExactPower.R
13ae59040eebda8bd35630a83bde819b *R/HWExactPrevious.R
f22820722e30d421961ed0a099536a47 *R/HWExactStats.R
051879cc852b8b39dfc31c97f22bebd2 *R/HWGenotypePlot.R
5a1ac58144ee8d7cc8f3f643fc802906 *R/HWIlr.R
9571e409043da8c01e528d28865c85f7 *R/HWIlrPlot.R
a38355070dc9ec1f7f350165a2a137fa *R/HWLRAllTests.R
6792c938d4347737d5a51dd4335acb68 *R/HWLRtest.R
43a34a3d8647d7660fe78478499585ff *R/HWLowercl.R
df46c965e5ee6ba439165f4b33bfdfb2 *R/HWLratio.R
c13a0a47facbfc62fe508dd40b4ac768 *R/HWMissing.R
630d9db4894e8c4733417821f486c6fc *R/HWPerm.R
8e4f037438fcb6a035acc98d5292c9db *R/HWPerm.mult.R
c8f12b2bdb1f5335bf98ce96a89c8a9d *R/HWPosterior.R
b86b65f512562532b208f2c80c2d6b38 *R/HWPower.R
c26ccacf749f4b235aecf74936e919a5 *R/HWQqplot.R
769e4bb06d9a5156f9f6a2c85bd9278b *R/HWTernaryPlot.R
66706a9383dbe6349e08ee4bf2051b03 *R/HWTriExact.R
28cf309bf8127a244d35496662413e92 *R/HWUppercl.R
0acebeb57c7100f70b380b7c33d71426 *R/HWf.R
3c248fed435dc48114da49d9a5118673 *R/MakeCounts.R
0b841e0250204b242069b37f20656cb7 *R/MakeFactor.R
ee1328a55b5565d4335a14afa3eada06 *R/RcppExports.R
406882d2a8f6ed306245ec03c9c8899a *R/ThetatoF.R
975cc1819ec703f66ad73f22aba08857 *R/UniqueGenotypeCounts.R
0440a3df2582912b820af7adf9865145 *R/af.R
deb61ebbcf67a83e569c9424ab596591 *R/agcounts.R
14a669d35777b58a6f739abcb8ea267a *R/allele.name.R
cf09aa7387361bf84be8762725a4e466 *R/alleles.R
c04025b7f744c307d0e12663fac056ec *R/alowcurve.R
dad49ba3983d5937a1822830790ebc21 *R/auxiliartable.R
c6a9a19d0a1e0f15c73691401724332e *R/combineC.R
5397083c3dd578c130c1d4c4a64079d7 *R/cutoff.R
7ef2ab819a67fadfae5910014e5a4bce *R/ddir.R
1e5917a6ff650a2ddf53ff052c985069 *R/dens.auto.R
0e555b546daa7a1990cee8baa151b033 *R/density.ma.gender.R
92884aa13e7fd8310d0bbdf69d1caaeb *R/dgraffelmanweir.bi.R
98e70547ca8e5fd626415cb91a695874 *R/dlevene.R
85ea3cfe7f1852bd92a8ceb36a04991c *R/dlevene.bi.R
3b00fd75df847795cd74b64f295bb0d0 *R/eqn3.R
d47bb99ed9f10854cd802b503f4cbc13 *R/eqnE.R
cd2e3f1187cb7c4a3f28e8a88c9fe334 *R/fisherz.R
a82aebc38318fa595bd18da6ad64c904 *R/gen.outcomesXtri.R
d19190fec2806d001bd5c508ab46b6cd *R/generate.outcomes.R
9c978917d108042699c805815dae35ed *R/genlabels.R
39acb6a454311412e519b1088011b860 *R/getpvals.R
0a6eafe51dc1baa29f029cf83e1cc4d7 *R/gmeanrow.R
915749878b1f6f330a202c286128d6d0 *R/heterozyg.R
a9fb2107f2a612c81ce938afa00b0bbc *R/homozyg.R
109d432cf578829f177ab14b83b51220 *R/hwe.modelC.obj.R
9be8fa64cb2aae892a7b974aae8fc2fc *R/hwe.modelC.sol.R
fd585f31ed3aa1d879dd78fb676e1caa *R/hwe.modelE.obj.R
2408226a8040180ffa20c0d36a25deff *R/hwe.modelE.sol.R
2f0e154d533ec3bce98c01b2b2acebf9 *R/ifisherz.R
2e891d5f380e4fd3a17d19dc7869a1a0 *R/is.wholenumber.R
e752b9b3d1fcc9e4323dc6af282203fc *R/limit.R
c512e36bdea2840d251f12b579b08f2b *R/loglik.1.R
70d2b14cc43ccdb3fa256f45f30cc3a7 *R/loglik.2.R
7e551c5defc5389f98a9cc811f65a7c3 *R/loglik.3.R
9b7b5006aa1899d7e440b561a63c613f *R/loglik.4.R
cd9489c7ae0462c0fa054204164e0cbf *R/loglik.5.R
8db1ca8975d5d0d0d3c753011b3e26d1 *R/loglik.6.R
50aa81e6af68d8d48eb7debcd60293b1 *R/mac.R
26e0d942c8625691241192aac5f2fb0e *R/maf.R
d52868da4759464eb98f2205ee71a3b1 *R/make.outcomes.R
1b87ef485a8722011687d964c5752793 *R/mipvalue.R
eba2c67ebdfdae195fe241d1ebe38526 *R/missingentirerow.R
28bbbf73466f140e7dabd55cc7f74878 *R/n.alleles.R
f3b8d2e4edfca47bbf76e342446f0f1f *R/n.outcomes.R
e72ba2497fffcdfebd4c66cb9754d55b *R/odd.R
bf876179cc8bb1a46646f6c22ce9551b *R/outcomes.3.R
1505a7e459f9f32a7da7cd9670d8b094 *R/recode.R
e053ba1693e880f5a3793d66e55dc126 *R/sample.prob.R
074f8615601737fb9328832f20a7e9b4 *R/sample.prob.last.R
0e009ef4dc140694c56be04f4d0d34c2 *R/strsort.R
f1972c075b937be56f11e5b3d3496c9c *R/subsamples.prob.R
9b2539ab81040d4676a3654c3a3c8462 *R/toTriangular.R
e8de4143f15b8abd9d9c519670088d6d *R/vaf.R
de1130dc326c2857c5cb7a99a104dd6d *build/vignette.rds
de901f61dc40540171eb943cea9f9fbe *data/Alzheimer.rda
a8fe32126fe63670b1910556a4c2c8dc *data/HapMapCHBChr1.rda
4aca24a4781fdecc819bff13d3410143 *data/JPTmultiallelicsChr7.rda
7d6f8c48ba1498335c07ae7283c9606a *data/JPTmultiallelicsChrX.rda
c35b856e98ed879d014a5654e4384e96 *data/JPTtriallelicsChr7.rda
22c9faf23cc41c7ab37383b6b3419fe2 *data/JPTtriallelicsChrX.rda
eda02e0350c7dd7030140ef3bdf5978f *data/Markers.rda
d95ac3570ab66f9dede411264e6f137d *data/Mourant.rda
34fcec5305bb110bf087ee98fcb32152 *inst/CITATION
9fb1b1ddde46ffb1602e5887e8d3df51 *inst/doc/HardyWeinberg.R
683843302f13bac72dcf43333a8e38e3 *inst/doc/HardyWeinberg.Rnw
c026afc24ec01377791a18495a03a743 *inst/doc/HardyWeinberg.pdf
78efad9d76b562e21e46e9d0c4b12bfa *man/AFtest.Rd
f33cac08f311810d1710c04a60e7f956 *man/Alzheimer.Rd
960dd676f716eae1ae2c55c57705f7d3 *man/EAFExact.Rd
af8e8188a974c5b52b4e2382344c1314 *man/GenerateSamples.Rd
00f3a028d5609be3e31c52396a561a7e *man/HWABO.Rd
9a0f0dd2147aab10dc7a1a4c9dfbef9f *man/HWAIC.Rd
643e854d29c33d1cb3bc4de8b3843233 *man/HWAlltests.Rd
f595f7a2cbcd5d14a469184370fb7ac4 *man/HWAlr.Rd
83006125bfc55d1c8c2bab22ac0d22fc *man/HWAlrPlot.Rd
2ccf206ebc094cc59ccf2c5c85bfdaa4 *man/HWChisq.Rd
24f5ed6189e2bf2a11e3035574356a1a *man/HWChisqMat.Rd
80c0af92ffcd56d3849ececa52cdf44d *man/HWChisqStats.Rd
15d88045682fbf2bbc894ab89cc660a5 *man/HWClo.Rd
d0b63bcac6b846afaace97ef49310f26 *man/HWClr.Rd
2d286f23e6666b3cb5a3c2a21cdaa40d *man/HWClrPlot.Rd
fa75e5278f8ac61b944311acf08e2801 *man/HWCondProbAB.Rd
507640865b6fe1867cbe615f34dc3849 *man/HWD.Rd
8e210cd739ddc6625e89a55643f042e2 *man/HWData.Rd
f523039fd647e360129482a8ee808e06 *man/HWExact.Rd
4393a04b1c4db1361f67b058109b5666 *man/HWExactMat.Rd
7f826c751f9625c97dcca74fd09a41c3 *man/HWExactPrevious.Rd
d2871a7428d5af8b62bed8f559cbd5ef *man/HWExactStats.Rd
71fe3eac610f4d9771c55eeb771c33b2 *man/HWGenotypePlot.Rd
67844ce8d2ca50f87dcbd4c06efc2582 *man/HWIlr.Rd
14b8c0088bf08f3ad9fd2db51ca64dcd *man/HWIlrPlot.Rd
91ec45f4124e138d9e545b67852e6941 *man/HWLRAllTests.Rd
24d9e044515c560e8044be9a9b763615 *man/HWLRtest.Rd
677bec8104648c5223618bbbb2ad930f *man/HWLratio.Rd
cc1c1fa86409ece20953b1a465e76bf9 *man/HWMissing.Rd
f7a2dc2d875abbc54bcf8b5167319610 *man/HWPerm.Rd
0aa697a143b9db008829c501fefd9a22 *man/HWPerm.mult.Rd
620478a37a8c7f9aaf1ac2b39192b051 *man/HWPosterior.Rd
887313abac0af4733d7b4d006fad0828 *man/HWPower.Rd
c7c55ed3ca74d4bcbf429483b22a4fce *man/HWQqplot.Rd
36ab85d08c9fae205f5bfbe210257173 *man/HWTernaryPlot.Rd
720d7d2a2bd7569a79f2f497da44ad10 *man/HWTriExact.Rd
073ed8835f9653a9a0e9be72b0c95743 *man/HWf.Rd
7ae211256b81e67119334dbbb3a82668 *man/HapMapCHBChr1.Rd
f0999cda3fe0d06ad47e282fd11f8ff2 *man/HardyWeinberg-package.Rd
f15a63478051e46ee3d858b947fafb45 *man/JPTmultiallelicsChr7.Rd
d1b9648f5f66529def7a9228ce37b191 *man/JPTmultiallelicsChrX.Rd
c9d5f328e2873d210b823915f520704c *man/JPTtriallelicsChr7.Rd
f6fea62e09e63b7877592b8c37e7b491 *man/JPTtriallelicsChrX.Rd
702235cb7fc4c7d705058ba448758e88 *man/MakeCounts.Rd
c5fdd6cd52e460daface8a284583ac80 *man/MakeFactor.Rd
d04f2b9b9760f74c03d95afc9734ac0b *man/Markers.Rd
67d171013a2a6bdcc0adabecd0c04681 *man/Mourant.Rd
b40f2f482a74c531d970224db9ab16c1 *man/ThetatoF.Rd
115822afb08737f77a67c61c9ee4fe38 *man/UniqueGenotypeCounts.Rd
fa3a8b3ac88896fe58c25ce329f240ab *man/af.Rd
d62ac4e63f4ce8927f9b872aa4b5147f *man/agcounts.Rd
ae79f6612b04a507f22f20ca599d1e32 *man/alleles.Rd
956ff2c9c07346fce47a48663d3681c7 *man/dgraffelmanweir.bi.Rd
5895dc8003c0bd13faf8b5d2e9a320ae *man/dlevene.Rd
602c16879e523829991a5f4e0584540e *man/dlevene.bi.Rd
f650ddac8f03727933ac556ca4182462 *man/fisherz.Rd
e8a35989b7abcb42153c3cc2ca06412e *man/genlabels.Rd
27eea081bbd2bf5d03954ab2eafb0b62 *man/ifisherz.Rd
cd7fc0d7952c34bc453d04c38ea26939 *man/mac.Rd
316e16c878027ab7c5fff247aa40c56c *man/maf.Rd
2bc89129e72b56e615a236d71d1d9e6b *man/n.alleles.Rd
12b8635fc711778ccb07e90712edc47a *man/recode.Rd
6b775303295a991d2b800ce3bc1e30fd *man/strsort.Rd
8de92d922d81847c84efd78c97c0c7e3 *man/toTriangular.Rd
9985233e78c960325cc356586d96c7fc *man/vaf.Rd
815bdf731884e4b07ffab6e52c12e10c *src/RcppExports.cpp
670fe98dba69efd7469465d5606caaf3 *src/SNPHWEX.cpp
e7aa49447851bbc231c6bf4dc5210fa7 *src/support.cpp
60338d16544b5fa5e162f82279830928 *vignettes/HWGeno1.pdf
25c84a6de29a1854ac134bb5fd2f7b0f *vignettes/HWGeno2.pdf
b1b111db801be273dae76c7f23976887 *vignettes/HWHapMapGeno1.pdf
8a9073ac55d56c3feae410d48a4f2638 *vignettes/HWHapMapGeno2.pdf
d1cdcac585ec884f8b327c89bab23ee4 *vignettes/HWHapMapIlr1.pdf
a487a535ed9a11a8001ebd260baaeb85 *vignettes/HWHapMapIlr2.pdf
879b1802f12f6cafd7cec28a6c5fe483 *vignettes/HWHapMapQQplot.pdf
9395c6710ff893bb71de10c6d860a272 *vignettes/HWHapMapQQplotInbred.pdf
acb0b35cc315c65d8b8f664dcb7de199 *vignettes/HWHapMapQQplotSimulated.pdf
dddcd54dcdbf0537ad9e015a3e90833d *vignettes/HWHomHet2.pdf
caa4a8ceb63405115c414a54c7e2bf5f *vignettes/HapMapCHBChr1.pdf
91f5dd53bd960086d9298ef74c7ee1ec *vignettes/HapMapCHBChr1Chisq.pdf
d91fbfd173d4533c28b8def4a07a5179 *vignettes/HapMapCHBChr1Exact.pdf
683843302f13bac72dcf43333a8e38e3 *vignettes/HardyWeinberg.Rnw
8421cce7fb816bbdfbcf083c63474534 *vignettes/HardyWeinberg.bib
21a6930f306d621f92d32d82307ab009 *vignettes/MourantQQPlot.pdf
148cb6ef8c996b19f2f9d1ddfe4b7f19 *vignettes/MourantTP.pdf
9727f639ab939bf29cce7b35fa192c3b *vignettes/Simulated2.pdf
0631ad075dc52c05f69e212666433d0d *vignettes/TernaryPlot.pdf