https://github.com/cran/brms
Raw File
Tip revision: c5522383df5d6e393d989509ed9597da619017ed authored by Paul-Christian Bürkner on 20 July 2017, 18:52:59 UTC
version 1.8.0
Tip revision: c552238
MD5
e3021dc90c684e8520377415782ecb58 *DESCRIPTION
e8604134a61e53d2c4064e631c805456 *NAMESPACE
fe0a90ea7567b43a8dc6be9b7cc1380e *R/brm.R
0cc9ce1d545e6f230c10ae792ba2c5d6 *R/brmsfit-helpers.R
c5a55a97e586b1191849813927546af7 *R/brmsfit-methods.R
82bf71713bfb7066815dff9d93f9913f *R/brmsformula.R
a7c0d916c2a20285347b9c11608f2ec0 *R/correlations.R
0c61b7614a1a9cddc6ef28a12dc279e8 *R/data-helpers.R
f8ef289dac6983804945a9e9fb6b7745 *R/data-predictor.R
d2ce13a2b374d29eec962624825ba4b2 *R/datasets.R
9c343b3c6cae631b6be2dfe98ad70ccc *R/deprecated-methods.R
b0074c5a8a7c62cdf6072e1f5e5e1779 *R/distributions.R
e00ab58b978b8d0dbe3e277523dc68a4 *R/extract_draws.R
fb4d38d291be43a863a531f5a535d8d0 *R/families.R
694eb0d04cd0a4f5407ddeb2c710927c *R/fitted.R
3bd5647ef084073822a5a9745c0d4a08 *R/formula-helpers.R
29707aa3107e1567eef7272e148ff69e *R/generics.R
c712b02aecc4b3bf429dc730359d1152 *R/linear_predictor.R
2506287dd0cc5e86a5ec687222cadf90 *R/loglik.R
176494d2e5884900ce964c38975ae7a2 *R/loo-helpers.R
fb47f21242edeaacdae6e9bc6368585c *R/lsp.R
44aae7a3807e4efd2096e10178d4a145 *R/make_stancode.R
72db6c6f96bdbacfeddc507dbe9d0783 *R/make_standata.R
e70035f09d058134d2f5990df822815d *R/misc-methods.R
55f24ea8ec090bd7e3c0f67bd6a70729 *R/misc.R
f61f1a22fa9be6d61ba81dfcc2ea679f *R/plots.R
2f1c6fd2f9310cff729ec78a7c4a2801 *R/predict.R
a156188529cd42be48ec71a981225696 *R/priors.R
87538e9eb1f3ade8f9f9894971e6a8f3 *R/rename.R
e9640000166e1274fc83ca2e87683824 *R/stan-helpers.R
a5a28276b5fb225b9f033f48978453c3 *R/stan-likelihood.R
4d971cc1127e9c3a77ce8f5b253298d0 *R/stan-predictor.R
9161f26b2e3ff26c35fa0d3b6f823492 *R/sysdata.rda
7b6f2a64c8f70c6cffde5028702ba0ab *R/validate.R
4000738510e38d91963cdda679d9f2ef *R/zzz.R
a3bc6bf21b2da172de6dda0179f2bd57 *README.md
e8731035e6b10783946690f1262ad5a2 *build/vignette.rds
75c7a9d4001c0f401aa5e858ec850679 *data/epilepsy.rda
d3e1729f040540ec7d640ce9d9e1c7c4 *data/inhaler.rda
b491f9e27065b6a30dfaa06835d4058f *data/kidney.rda
a46e48a629f2473eaf83e7fea278ae7d *inst/CITATION
0f9270ea467374f877c0a1ce55466db7 *inst/NEWS.Rd
0c0c641dfcfb55ae673b324c1ac5350c *inst/chunks/data_arma_cov.stan
d7b3c3a00dd8c5039b532b2d1db7a360 *inst/chunks/data_mv.stan
bcdbed13a50e7a45d1c737332c1aac8e *inst/chunks/fun_as_matrix.stan
1bd110b34958eb85625a247f2b0d9b60 *inst/chunks/fun_asym_laplace.stan
a6d4286c602fa7c20fa9839153baa5d4 *inst/chunks/fun_cauchit.stan
2ab7f74b499445d9d7e4a206b6940e9c *inst/chunks/fun_cloglog.stan
5547f85cad30bf2192970d207a487f9b *inst/chunks/fun_cov_matrix_ar1.stan
9fcdb79bb403f0e20114add6068f8fdb *inst/chunks/fun_cov_matrix_arma1.stan
a7a77459badbfe0f9cef47277c315ee7 *inst/chunks/fun_cov_matrix_ma1.stan
d278c4ed9f0492b7258cbc7b94b9901b *inst/chunks/fun_gaussian_process.stan
dbe4b75076e7731e3dc59d7e3f600286 *inst/chunks/fun_gen_extreme_value.stan
b17b82133dd799ff2477f02feaaa2dca *inst/chunks/fun_horseshoe.stan
76ee9e72bf0bb69bd7a6803ab80f17be *inst/chunks/fun_hurdle_gamma.stan
ee6b7fbca98cf49b5415c2c3d8e0fe54 *inst/chunks/fun_hurdle_lognormal.stan
4a3d6e2ed73a61785bf07915682a52aa *inst/chunks/fun_hurdle_negbinomial.stan
64f02f8fbeb599db3b121cb722217f9f *inst/chunks/fun_hurdle_poisson.stan
432e104ec4a6ba1915178769190a3fcc *inst/chunks/fun_inv_gaussian.stan
7b8c9743e9b203bd2f15105ced33218b *inst/chunks/fun_kronecker.stan
fb9e84df9cbe026e3e3b3e6d106d09dd *inst/chunks/fun_logm1.stan
f539f4799178fcac37cb018ae693e697 *inst/chunks/fun_monotonic.stan
f0a68263a46024aa4cdff609f30cef97 *inst/chunks/fun_normal_cov.stan
bf294f017b6766c5d8bcbaebcc2c5225 *inst/chunks/fun_normal_errorsar.stan
415de91692ee20ddcb9c9165c7f8fd51 *inst/chunks/fun_normal_lagsar.stan
52395feda1d9e13856b101a1da0cc036 *inst/chunks/fun_scale_xi.stan
c7bc4bcfd497e2866c27009103f0028f *inst/chunks/fun_sparse_car_lpdf.stan
b63b2188328fcae10cfacd7443d71e55 *inst/chunks/fun_sparse_icar_lpdf.stan
dcd55b3957073ee15696f2006cd3154d *inst/chunks/fun_student_t_cov.stan
8a6e95a9cf1ebb2511e01cab0683f212 *inst/chunks/fun_student_t_errorsar.stan
381c82d8c5055063038154f3ddd3a389 *inst/chunks/fun_student_t_lagsar.stan
15e7bba16664915bcb682a58b012d5d4 *inst/chunks/fun_tan_half.stan
2396fcafffb41122f71465f7306a8cd0 *inst/chunks/fun_von_mises.stan
28240b527b6638f5f7f1c52a03c45dcd *inst/chunks/fun_wiener_diffusion.stan
5bba4739c8f7a3e98065566601a68d64 *inst/chunks/fun_zero_inflated_beta.stan
bcaed2e37bda8328b9065beffebcd5fa *inst/chunks/fun_zero_inflated_binomial.stan
f4755fab1a2fa8a3827a22d60d7b9525 *inst/chunks/fun_zero_inflated_negbinomial.stan
bf7950926c6fd9b80bc9ecad828962f7 *inst/chunks/fun_zero_inflated_poisson.stan
6a8a7fad7ce81c71aa19440cb8b082d9 *inst/chunks/fun_zero_one_inflated_beta.stan
c5519d45463b607dcb564620bbd6ee69 *inst/chunks/tdataC_inv_gaussian.stan
4537d5e2606a27db0e56e47c6c034b16 *inst/chunks/tdataD_inv_gaussian.stan
0c98b4624d17bfd3f26a9682c0df90ba *inst/doc/brms_distreg.R
3effb9f8ed9be865a94c3539f2e364a9 *inst/doc/brms_distreg.Rmd
9ced01c465b84657c1cbb1273ec581be *inst/doc/brms_distreg.html
a19a5fa6d27e4977a326d28c5f5221a5 *inst/doc/brms_families.Rmd
865faea2faaffcccd19c48ba774b36e6 *inst/doc/brms_families.html
3fb653b970a4bebf325e02dd004e2783 *inst/doc/brms_monotonic.R
b3d6bed3e89b15a0244eb63088f649e5 *inst/doc/brms_monotonic.Rmd
c6ce7f3327ee08acb8edf46404ba8090 *inst/doc/brms_monotonic.html
8d23d05fc05a34b38ca902eaf967d539 *inst/doc/brms_multilevel.ltx
06c4978dda25a7f7b7b471b380f7c66c *inst/doc/brms_multilevel.pdf
46bf73102f33e353ff0e01583e920518 *inst/doc/brms_nonlinear.R
da8d33edcabd36dfb6c32cb718618567 *inst/doc/brms_nonlinear.Rmd
bda6819e382d769b80dc05a305e7851b *inst/doc/brms_nonlinear.html
45f2c61a0ed14e4d057fa3eea1ea5462 *inst/doc/brms_overview.ltx
91d3f23292833e6911e5a3fcea9cc5e7 *inst/doc/brms_overview.pdf
5c72e10cb7a110763120d53ca186d733 *inst/doc/brms_phylogenetics.R
95f6c249965773facf38408b0a434c87 *inst/doc/brms_phylogenetics.Rmd
b46ac207ce4d9bb9adbf536611741ab7 *inst/doc/brms_phylogenetics.html
5292159f54bc867d838c9519beb0495d *man/AsymLaplace.Rd
b8904a249feb8a198a87dc8d3bd286e9 *man/ExGaussian.Rd
dee6a6dcda7255ac1b33757c8ff9fb98 *man/Frechet.Rd
0fe6176871d853ed1627b09e4c871f22 *man/GenExtremeValue.Rd
eabcb674493952c1ab141d1a510d402a *man/InvGaussian.Rd
e23824065dde1aadbd6f29d17b9d0748 *man/LOO.Rd
1ad3b32ea91577ba8f3c541429b820e3 *man/MultiNormal.Rd
5acdef22ec5aaa8366a97a6c672be82f *man/MultiStudentT.Rd
20bf83b3c50c0d76299442687645bfc4 *man/SkewNormal.Rd
bd9f3af055600f38a54c5a6bfc6df482 *man/StudentT.Rd
129969e64e05c330ab47a127add2563a *man/VarCorr.brmsfit.Rd
8e6af754d099af67f0230bf49b0333de *man/VonMises.Rd
24141ac3c584df141333fc8cdfe6e64b *man/WAIC.Rd
9db37fe22e70b66487375d0c47d6b831 *man/Wiener.Rd
f48bd964d93a062288a68dcbec703a5d *man/add_ic.Rd
693b8a50fe9f11e4cb9dd8b3b623eb7b *man/add_loo.Rd
41f90f02292ca17afc37a77241dfcf8c *man/add_waic.Rd
dda1078c40322d7b37a6dc53b1ff47bf *man/addition-terms.Rd
c5627aa591c31ee2d0185f931a054317 *man/as.mcmc.brmsfit.Rd
8ddaa6366e9ae8754188fc0851386eee *man/brm.Rd
2d8d4b12c3cb22f400f6e4d72e2c3f55 *man/brms-package.Rd
96627506752619f4b163e2f076436b78 *man/brmsfamily.Rd
56a39863f5ba4c8cb807396912714d3e *man/brmsfit-class.Rd
164f69106ce2b00043097d96872ff2ac *man/brmsformula.Rd
b27643aedbb9e09842854f79b26b2169 *man/brmshypothesis.Rd
acc8da7df4de572f374f93d57d75bd97 *man/coef.brmsfit.Rd
ee07a958b1dc898ca230dcf10797b0d5 *man/compare_ic.Rd
550ac0d0c067fcfbb02768f55b42eb8a *man/control_params.Rd
6eb3a17959dd2489e371057a0311ef19 *man/cor_ar.Rd
b932b609730eb1415b4323f8be87dd35 *man/cor_arma.Rd
116ac0d6e749370c2c5c0ec632a34d98 *man/cor_arr.Rd
8efbbf099688d9b0c88c430d4ab6fbdb *man/cor_brms.Rd
2066d46166dab9d4a065b7ba774ca942 *man/cor_bsts.Rd
0e58673c58e39fffd35d8a050466b7ca *man/cor_car.Rd
a97cdb653057a0c603638b69d35024e0 *man/cor_fixed.Rd
6005df1eba1102aa197b9881f5868d62 *man/cor_ma.Rd
ea4bac946863d135ede0476570a98c3a *man/cor_sar.Rd
c1de82c3fcd7ef062c7e01ff653c05b0 *man/cs.Rd
ea55dfa648fe79109e8fc2bb0d5ae06e *man/diagnostic-quantities.Rd
479bd92e4d4c89bff06953056b8032dc *man/epilepsy.Rd
50f09725401f79e793c56cfdf584080e *man/expose_functions.Rd
d81990e3faeffca31ff835c2a4cde4ac *man/expp1.Rd
604e9cdd9300250df24e9bf09b92c147 *man/fitted.brmsfit.Rd
4473bec49e89719beb5add868b6d8df5 *man/fixef.brmsfit.Rd
a471f8737cca77dbd7f6e510afa4c4e8 *man/get_prior.Rd
8a31795fac182a3a2aa58e603074ff73 *man/gp.Rd
1aeb6ca1c40d8bed2ea83a3e7309984d *man/gr.Rd
d28e6d55245b99ced11052e16ad62158 *man/horseshoe.Rd
35baaad7522eeefce5ce3d6124bc24a9 *man/hypothesis.Rd
158f2fc7fff4a79eac085bca907c1ea6 *man/inhaler.Rd
2fa93411ecac3c4be4ed32525e78b364 *man/inv_logit_scaled.Rd
6c2bcc631c6391fc3985874290a84d9a *man/is.brmsfit.Rd
837292b068f84e6ee06a2b0e2fbfcefe *man/is.brmsformula.Rd
15ff1c006fba2a58b1025d39bbde6362 *man/is.brmsprior.Rd
c55525371405caf339a18f68abb43d6a *man/is.brmsterms.Rd
9a836674c818851778dbfe236d080c87 *man/is.cor_brms.Rd
0d2702e79630ec15aa644a80c8cd470b *man/kfold.Rd
9be53d32271d76280d76d57a106fa3bc *man/kidney.Rd
5cc3f74a4a4ef0f53b93610f5159cd11 *man/lasso.Rd
e7ca7e8eaae48f4cc4ffa83b06e551a3 *man/launch_shiny.Rd
81f77071636ee724d25c8314bbdce200 *man/log_lik.brmsfit.Rd
3f0acd595611a2c3fceeea9aecb8d80b *man/logit_scaled.Rd
1eb5bd1141bfab19520c1b9bc796d64d *man/logm1.Rd
f9a173026951e21ce4bb5f3ac4f149b5 *man/loo_predict.brmsfit.Rd
f10697ceac52e4d785ee08164e1d5285 *man/make_stancode.Rd
8a0564142d9924798c126aeda9e66610 *man/make_standata.Rd
a8fa981034a7c38b9b7b215f336bcbf9 *man/marginal_effects.Rd
4b60e1241e0f6030422592e55975923f *man/marginal_smooths.Rd
95d318d3a0dfbe57507b4fc79e7f9601 *man/me.Rd
8942711a80ac37ee5b9c6eba9b5b9fdc *man/mixture.Rd
dec8dcb233d5ec08e09848d263c4c990 *man/mm.Rd
9ccf270b2ad8b504add28b490cb92771 *man/mo.Rd
122d5fecb9ac0a2402a7da8da2317db8 *man/ngrps.Rd
ff0792a999e2c565b261c74d85c1628f *man/nsamples.Rd
2a35819dc9acc96e6c203062ccd0e301 *man/pairs.brmsfit.Rd
b9ba1b60614cef8adc6c12f1a7323376 *man/parnames.Rd
0d1160a2273a14a0799c731df523c539 *man/parse_bf.Rd
322f86a63e89cf129b1fcc34c5dffd29 *man/plot.brmsfit.Rd
6163b6cf5ea1a821a5995ad192731e46 *man/posterior_samples.Rd
7cc4082e6a7e4b3057764af610a40968 *man/pp_check.brmsfit.Rd
9720462c7437f9ce19e4e76f81653d30 *man/pp_mixture.Rd
543f0c87de490583043d269250a0ec6c *man/predict.brmsfit.Rd
6a3b32eaf43eb8fff7127afe9d15a463 *man/print.brmsfit.Rd
3f4664738adcda98093cf5a0edff134e *man/print.brmsprior.Rd
6c040460b42e16ebd0f8e30b6f04f59a *man/prior_samples.Rd
f2d67fb86a9639336d731d057652dfb8 *man/prior_summary.brmsfit.Rd
78aa0dd609089644f9c1c70de97ecc64 *man/ranef.brmsfit.Rd
745d5d015963fb700a7e0e91feb3921a *man/reloo.Rd
fef0e53f45eeaf37bc9a0389e54038b7 *man/residuals.brmsfit.Rd
ab6ae119f18b24ccd66c7944a53ddab2 *man/restructure.Rd
f70138046d2f2662a4da3ba1e2e91af0 *man/set_prior.Rd
0b7ad7fa7880ca7a8e05151ba525d0be *man/stancode.Rd
f8cffcfd13de47fb51534e11010490fd *man/standata.Rd
d1f929ff84efa172381459512732c2cf *man/stanplot.Rd
4324b3e0e61f44050948a19bfa887120 *man/summary.brmsfit.Rd
f6631a445448cf072c9e09e8e6a0a73d *man/update.brmsfit.Rd
64587aa5909cd82fe0594c74f0636266 *man/vcov.brmsfit.Rd
2b545ab36b38afc18e158956ff3071a7 *tests/testthat.R
5edc3f25b677bae8bcf4693e63818e7e *tests/testthat/tests.brm.R
518d539e6034854febf59f08c629c28f *tests/testthat/tests.brmsfit-helpers.R
c41c3a9e164d626ae5ba528b0fee8c28 *tests/testthat/tests.brmsfit-methods.R
7089a4bac65867faf2d7c8682d932352 *tests/testthat/tests.brmsformula.R
4ad1eae5d11b65b61b4c89fd3ea4b724 *tests/testthat/tests.data-helpers.R
2ff9a4241fb4f7ed2d538c4d2120ab5f *tests/testthat/tests.distributions.R
7965f965f0f8c2e7f5be1b4f7cd06bbd *tests/testthat/tests.families.R
07c7e368d54bd154a9f2c6028260cdd7 *tests/testthat/tests.fitted.R
c91c3add0f07137f0d1877d37575225e *tests/testthat/tests.loglik.R
7752c5e6deda161444bf443c6996522d *tests/testthat/tests.make_stancode.R
66fb3a979b9750c74fa02a9812c0ea1c *tests/testthat/tests.make_standata.R
497c2ac27e95557cf22f75afc7e32950 *tests/testthat/tests.misc.R
4a3d497307902b2f0167fa334842ac7b *tests/testthat/tests.plots.R
9846e68c0bb9286f142e51a79b741cdc *tests/testthat/tests.predict.R
43604ec3ced5ea0d00ea36071046bf10 *tests/testthat/tests.priors.R
0e4c6c32df4b6851cae4621d620b0f50 *tests/testthat/tests.rename.R
01b967a06f6d9de88c006b4401daef11 *tests/testthat/tests.stan_functions.R
d5ed89bb6f795fc401a2eb073bf0cff6 *tests/testthat/tests.validate.R
3effb9f8ed9be865a94c3539f2e364a9 *vignettes/brms_distreg.Rmd
a19a5fa6d27e4977a326d28c5f5221a5 *vignettes/brms_families.Rmd
b3d6bed3e89b15a0244eb63088f649e5 *vignettes/brms_monotonic.Rmd
8d23d05fc05a34b38ca902eaf967d539 *vignettes/brms_multilevel.ltx
da8d33edcabd36dfb6c32cb718618567 *vignettes/brms_nonlinear.Rmd
45f2c61a0ed14e4d057fa3eea1ea5462 *vignettes/brms_overview.ltx
95f6c249965773facf38408b0a434c87 *vignettes/brms_phylogenetics.Rmd
68bb8ad042bc52ea325d708633a8c614 *vignettes/children/SETTINGS-knitr.txt
b0a5908419dd7c8629b40973837fb6a8 *vignettes/citations.bib
1e02697a37e36908b7d8954bfaea2e92 *vignettes/flowchart.pdf
598082534ce6cb51d34c01a69dda5088 *vignettes/inhaler_plot.pdf
d7d237f55a6850eba15ad5ceeaf821f6 *vignettes/kidney_marginal_effects.pdf
7632f1034a93aa91cd5d27f3430419f7 *vignettes/kidney_plot.pdf
f29db82ebb373137dd7688e7d15505bf *vignettes/me_loss1.pdf
060fab6fa24eaff29594d6f367be23c3 *vignettes/me_loss1_year.pdf
ddd5d84c1a35cb021166ffe1a836f736 *vignettes/me_loss3_year.pdf
5b56487f6dc0b92bfe7894ba09264971 *vignettes/me_zinb1.pdf
1fe96ffc00b75a46155b60f534625f43 *vignettes/ppc_mm1.pdf
back to top