https://github.com/cran/meta
Tip revision: 324f39ec5c555d2a7192665ba8e09e5255207d00 authored by Guido Schwarzer on 28 October 2010, 00:00:00 UTC
version 1.6-1
version 1.6-1
Tip revision: 324f39e
NEWS
2010-10-28, version 1.6-1
Function forest.meta:
- modified so that the number of events is printed in the
correct order for objects of class metaprop if argument
sort or order is used
- modified so that transformed proportions are printed
for individual studies in column 'TE' if function metagen
is used with argument sm equal to either 'PLN', 'PLOGIT',
'PAS', or 'PFT'
Function as.data.frame.meta:
- modified so that the function works for meta-analyses
with six studies which previously resulted in an error message
'Error: evaluation nested too deeply: infinite recursion ...'
- modified so that additional arguments '...' can be passed to
function
Function addvar:
- option stringsAsFactors=FALSE added to internal call of
R function as.data.frame.meta
- additional checks for existence of columns by.x and by.y
- additional checks for situations with duplicate entries
for columns by.x and by.y added
Function print.meta:
- modified so that backtransformed proportions are printed
for individual studies if function metagen is used with
argument sm equal to either 'PLN', 'PLOGIT', 'PAS', or 'PFT'
Examples given in the following help pages have been (slightly)
updated:
- read.mtv, read.rm5, metacr
2010-06-21, version 1.6-0
Function forest.meta:
- for subgroup analyses (i.e. groups defined by argument 'byvar'),
result for both fixed effect and random effects model are printed
(in older versions of the meta package only results for either
fixed effect or random effects model could be printed)
- new arguments text.fixed.w and text.random.w to specify label for
estimates within subgroups
- new arguments to change colour of several parts of the plot:
col.i.inside.square, col.square, col.square.lines,
col.diamond, col.diamond.fixed, col.diamond.random,
col.diamond.lines, col.diamond.fixed.lines, col.diamond.random.lines
- new arguments to print information on heterogeneity measures:
print.I2, print.tau2, print.Q, print.pval.Q,
hetstat, hetlab
- new arguments to change fontsize and fontface of several parts
of the plot:
fs.heading, fs.fixed, fs.random, fs.study,
fs.fixed.labels, fs.random.labels, fs.study.labels,
fs.hetstat, fs.axis, fs.xlab,
ff.heading, ff.fixed, ff.random, ff.study,
ff.fixed.labels, ff.random.labels, ff.study.labels,
ff.hetstat, ff.axis, ff.xlab
- new arguments to change gap between columns
colgap.left, colgap.right=colgap,
colgap.forest, colgap.forest.left, colgap.forest.right
- new argument 'just' to change justification of text for
additional columns
- new argument 'addspace' to print a blank line at top and
bottom of study results
- argument 'squaresize' superseeds argument 'boxsize'
- new argument 'new' indicating whether a new figure should
be printed in an existing graphics window
(internally, the grid.newpage command is used if new=TRUE)
- no line is printed for the fixed effect and random effects
model if lty.fixed=NULL or lty.random=NULL, respectively
- symmetric forest plots can be produced by setting
argument xlim="s"
Function print.summary.meta:
- new argument print.CMH indicating whether Cochran-Mantel-Haenszel
test for overall effect should be printed (default print.CMH=FALSE)
- For subgroup analyses (i.e. groups defined by argument 'byvar'),
result for test of heterogeneity printed separately for fixed effect
and random effects model
Functions metabin and summary.meta:
- new argument print.CMH indicating whether Cochran-Mantel-Haenszel
test for overall effect should be printed (default print.CMH=FALSE)
The following help pages have been updated:
- forest.meta, metabin, print.summary.meta, summary.meta
2010-05-07, version 1.5-0
Version jump to 1.5-0 as several changes have been implemented.
New functions:
- metacor (meta-analysis of correlations)
- forest (generic method for forest plots)
- forest.meta (generic method for forest plots)
- radial (generic method for radial plots)
- radial.default (generic method for radial plots)
- radial.meta (generic method for radial plots)
- asin2p (function used internally)
- logit2p (function used internally)
- xlab (function used internally)
- z2cor (function used internally)
Functions forest.meta:
- new arguments (pooled.totals, pooled.events) to specify whether
total number of observations and events should be displayed in the plot
- new argument (pscale) to rescale proportions for objects of class metaprop
- modified so that argument label is recognised for other
effect measures than RR, OR, and HR
- modified so that argument xlim is recognised for other
effect measures than RR, OR, and HR
- arguments rightlabs and leftlabs accept NAs for columns
using default labels
- modified so that significant digits are printed uniformly
- correct sum of percentage weight is printed for random effects model
in forest plots with subgroups
- x limits (min,max) of the plot are defined by the width of
confidence intervals instead of (0,1) for objects of class metaprop
Function metaprop:
- implementation of additional transformations:
log transformation, logit transformation, raw, i.e. untransformed, proportions
- new argument sm to choose summary measure (i.e. transformation)
- use of argument freeman.tukey is deprecated (use argument sm instead)
Functions funnel and funnel.meta:
- argument y removed
Functions labbe and labbe.meta:
- argument y removed
Functions trimfill and trimfill.meta:
- argument seTE removed
Function summary.meta:
- new list objects H.w, I2.w, Q.b.fixed and Q.b.random
for heterogeneity statistics within subgroups
Extension for meta-analysis of correlations:
- forest.meta, metacum, metainf, print.meta,
print.summary.meta, summary.meta
Function plot.meta:
- a warning is printed that the function is no longer maintained
(function forest.meta should be used instead)
New list element version with information on version number of
meta package used to create an object (applies only to object
creating functions, e.g. metabin, metabias).
Update of several help pages.
Use file NEWS instead of ChangeLog to document changes.
2010-01-12, version 1.1-8
Functions summary.meta, print.summary.meta:
- modified so that a test for subgroup differences
is not calculated and printed for meta-analyses
using the Mantel-Haenszel method for binary data
2010-01-11, version 1.1-7
Functions metabin, metacont, metagen, metaprop:
- modified so that a sensible default value is used for argument bylab
if argument byvar is not missing
2010-01-11, version 1.1-6
Function forest:
- modified so that additional columns are printed in the correct order
if argument sort or order is used
2009-12-21, version 1.1-5
Function forest (incl. help page):
- new argument digits specifying minimal number of significant digits
for treatment estimate and its confidence interval
2009-11-04, version 1.1-4
Function summary.meta:
- modified so that results for subgroups (if byvar != NULL)
are calculated for both fixed effect and random effects model:
* list 'within' no longer returned by function summary.meta
* lists 'within.fixed' and 'within.random' returned by
function summary.meta
- modified so that variable name of subgroups is printed
correctly
- check whether input is an object of class summary.meta
Function print.summary.meta:
- modified so that a warning is printed if both comb.fixed and
comb.random are TRUE and results for subgroups are supposed to
be printed
Help pages of functions print.summary.meta and forest updated:
- detailed information on printing and plotting of subgroup
results if both comb.fixed and comb.random are TRUE
Help page of function metagen updated:
- new example with meta-analysis of survival data
2009-10-30, version 1.1-3
New functions trimfill, trimfill.default and trimfill.meta:
- generic method for trim-and-fill method
2009-10-09, version 1.1-2
New functions labbe, labbe.default, labbe.metabin:
- produce L'Abbe plots
New functions funnel, funnel.default and funnel.meta:
- generic method for funnel plots
Functions funnel.default and funnel.meta:
- modified so that contour-enhanced funnel plots can be produced
(new arguments: contour.levels, col.contour, ref)
- modified so that study labels can be printed on funnel plot
(new arguments: studlab, cex.studlab)
- modified so that line type, width and colour can be changed for
fixed effect treatment effect
(new arguments: lty.fixed, lwd.fixed, col.fixed)
- modified so that random effects treatment effect can be plotted
(new arguments: comb.random, lty.random, lwd.random, col.random)
- new default values for arguments:
* pch=21 (previously: pch=1)
* comb.fixed=x$comb.fixed
- modified so that background colour of points in funnel plot can
be changed
(new argument: bg)
Function forest:
- new default values for arguments lab.e and lab.c: x$label.e and
x$label.c, respectively. If these values are NULL the old default
values "Experimental" and "Control" are used.
Functions metabin, metacont, metagen:
- arguments label.e and label.c added
Function metacr:
- use arguments label.e and label.c in calls to functions
metabin, metacont, metagen
2009-08-31, version 1.0-6
First major version released on CRAN
No NEWS available for versions < 1.0