https://github.com/ctlab/phantasus
Tip revision: 04cf5191228b8f40e28cc537778541bc2d1c429b authored by Vladislav Kamenev on 15 November 2018, 16:44:53 UTC
Optimize GDS parsing
Optimize GDS parsing
Tip revision: 04cf519
NAMESPACE
# Generated by roxygen2: do not edit by hand
export(generatePreloadedSession)
export(getES)
export(getGDS)
export(getGSE)
export(read.gct)
export(reparseCachedESs)
export(servePhantasus)
export(write.gct)
import(Biobase)
import(GEOquery)
import(Rook)
import(ccaPP)
import(ggplot2)
import(grid)
import(gtable)
import(htmltools)
import(httpuv)
import(jsonlite)
import(limma)
import(opencpu)
import(rhdf5)
import(stats)
import(svglite)
importFrom(AnnotationDbi,columns)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,loadDb)
importFrom(AnnotationDbi,mapIds)
importFrom(AnnotationDbi,species)
importFrom(fgsea,fgseaMultilevel)
importFrom(fgsea,plotEnrichment)
importFrom(ggplot2,ggtitle)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,svg)
importFrom(methods,new)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(utils,download.file)
importFrom(utils,getFromNamespace)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)