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Tip revision: 5e2eeebe6ad32853c0de051f7a8b2676d770ed59 authored by Daniel Himmelstein on 07 October 2018, 12:03:30 UTC
Prepare v0.2.0 release
Tip revision: 5e2eeeb
test_manuscript.py
from manubot.process.manuscript import (
    get_citation_strings,
    replace_citations_strings_with_ids
)


def test_get_citation_strings_1():
    text = '''
    Sci-Hub has released article request records from its server logs, covering 165 days from September 2015 through February 2016 [@doi:10.1126/science.352.6285.508; @doi:10.1126/science.aaf5664; @doi:10.5061/dryad.q447c/1].
    We filtered for valid requests by excluding DOIs not included in our literature catalog and omitting requests that occurred before an article's publication date.

    Figure {@fig:citescore}B shows that articles from highly cited journals were visited much more frequently on average.

    @10.5061/bad_doi says blah but @url:https://www.courtlistener.com/docket/4355308/1/elsevier-inc-v-sci-hub/ disagrees.
    '''
    citations = get_citation_strings(text)
    expected = sorted([
        '@doi:10.1126/science.352.6285.508',
        '@doi:10.1126/science.aaf5664',
        '@doi:10.5061/dryad.q447c/1',
        '@url:https://www.courtlistener.com/docket/4355308/1/elsevier-inc-v-sci-hub/',
    ])
    assert citations == expected


def test_replace_citations_strings_with_ids():
    """
    Test that text does not get converted to:

    > our new Manubot tool [@cTN2TQIL-rootstock; @cTN2TQIL] for automating
    manuscript generation.

    See https://github.com/greenelab/manubot/issues/9
    """
    string_to_id = {
        '@url:https://github.com/greenelab/manubot': 'cTN2TQIL',
        '@url:https://github.com/greenelab/manubot-rootstock': '1B7Y2HVtw',
    }
    text = 'our new Manubot tool [@url:https://github.com/greenelab/manubot-rootstock; @url:https://github.com/greenelab/manubot] for automating manuscript generation.'
    text = replace_citations_strings_with_ids(text, string_to_id)
    assert '[@1B7Y2HVtw; @cTN2TQIL]' in text
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