https://github.com/vector-engineering/COVID19-CG
Tip revision: 9de6ebe07a1de10778f0d5a994fe67df6531cd6e authored by Albert Chen on 02 August 2020, 17:44:15 UTC
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Tip revision: 9de6ebe
environment.yml
name: covid-ui
channels:
- conda-forge
- defaults
- bioconda
dependencies:
- python=3.8.3
- numpy=1.18.5
- networkx=2.4
- pandas=1.0.5
- tqdm=4.46.1
- xlrd=1.2.0
- bowtie2=2.4.1
- biopython=1.76
- pip=20.1.1
- pip:
- pysam==0.15.4
# For cloud function development
- functions-framework==2.0.0
- google-cloud-storage==1.29.0
# If you want to run the notebooks:
- jupyter=1.0.0
- jupyter_contrib_nbextensions=0.5.1