https://github.com/isovic/graphmap
Tip revision: a4d54a6d5363cf795742afb90cb6e87ed95000d1 authored by Ivan Sovic (T530) on 30 March 2016, 15:23:36 UTC
Fixed the mapping quality calculation. Ambiguity is now calculated with respect to the number of covered bases instead of the number of kmers. The parsimonious mode is now switched off by default, use --parsim to switch it on. For parsimonious mode, I removed the 0.50f for the minimum bin value - this is now only determined with the --min-bin-perc parameter. Bin value is calculated by summing the counts for the current bin, and half the counts of a bin before and a bin after.
Fixed the mapping quality calculation. Ambiguity is now calculated with respect to the number of covered bases instead of the number of kmers. The parsimonious mode is now switched off by default, use --parsim to switch it on. For parsimonious mode, I removed the 0.50f for the minimum bin value - this is now only determined with the --min-bin-perc parameter. Bin value is calculated by summing the counts for the current bin, and half the counts of a bin before and a bin after.
Tip revision: a4d54a6
| File | Mode | Size |
|---|---|---|
| codebase | ||
| doc | ||
| reproducibility | ||
| scripts | ||
| src | ||
| .gitignore | -rw-r--r-- | 238 bytes |
| .gitmodules | -rw-r--r-- | 220 bytes |
| INSTALL | -rw-r--r-- | 586 bytes |
| LICENCE | -rw-r--r-- | 1.1 KB |
| Makefile | -rwxr-xr-x | 7.4 KB |
| README.md | -rw-r--r-- | 7.6 KB |
| overlap.md | -rw-r--r-- | 2.4 KB |
