https://github.com/BradnerLab/pipeline
Tip revision: e68acf0be2c9f667cd02e3ef1bf99881fd0a7cf2 authored by John DiMatteo on 09 February 2015, 04:50:09 UTC
Bin normalization now takes into account read sizes.
Bin normalization now takes into account read sizes.
Tip revision: e68acf0
File | Mode | Size |
---|---|---|
annotation | ||
bamliquidator_internal | ||
hockeysticks | ||
.gitignore | -rw-r--r-- | 9 bytes |
.pylintrc | -rw-r--r-- | 8.0 KB |
.travis.yml | -rw-r--r-- | 450 bytes |
GPL16043.py | -rwxr-xr-x | 12.3 KB |
GPL16043.r | -rwxr-xr-x | 8.8 KB |
GPL16043.sh | -rwxr-xr-x | 2.0 KB |
LICENSE | -rw-r--r-- | 1.2 KB |
README.md | -rwxr-xr-x | 558 bytes |
ROSE2_callSuper.R | -rwxr-xr-x | 19.5 KB |
ROSE2_geneMapper.py | -rw-r--r-- | 29.7 KB |
ROSE2_main.py | -rwxr-xr-x | 23.9 KB |
ROSE2_stitchOpt.R | -rw-r--r-- | 1.4 KB |
bamPlot.R | -rwxr-xr-x | 5.5 KB |
bamPlot.py | -rwxr-xr-x | 16.0 KB |
bamPlotExample.sh | -rwxr-xr-x | 2.6 KB |
bamPlot_turbo.R | -rwxr-xr-x | 12.3 KB |
bamPlot_turbo.py | -rwxr-xr-x | 21.4 KB |
bamTableUpdate.py | -rw-r--r-- | 5.0 KB |
bamToGFF.py | -rwxr-xr-x | 17.4 KB |
bamToGFFExample.sh | -rwxr-xr-x | 3.8 KB |
bamToGFF_turbo.py | -rwxr-xr-x | 9.5 KB |
bamliquidator_batch.py | l--------- | 64 bytes |
callBowtie.py | -rwxr-xr-x | 10.2 KB |
callBowtie2.py | -rw-r--r-- | 15.0 KB |
clusterEnhancer.R | -rw-r--r-- | 13.5 KB |
clusterEnhancer.py | -rw-r--r-- | 23.3 KB |
commandline_template.py | -rw-r--r-- | 3.9 KB |
dynamicEnhancer.py | -rwxr-xr-x | 28.8 KB |
dynamicEnhancer_plot.R | -rwxr-xr-x | 4.3 KB |
dynamicEnhancer_rank.R | -rwxr-xr-x | 2.8 KB |
extractGuides.py | -rw-r--r-- | 6.4 KB |
heatMapOrdered.R | -rwxr-xr-x | 3.7 KB |
makeBamMeta.py | -rwxr-xr-x | 9.8 KB |
pipeline.py | -rwxr-xr-x | 94.4 KB |
pipeline_dfci.py | -rwxr-xr-x | 142.0 KB |
pipeline_template.py | -rwxr-xr-x | 5.4 KB |
processGeckoBam.py | -rw-r--r-- | 12.1 KB |
pythonTemplate.py | -rwxr-xr-x | 2.1 KB |
python_template.py | -rwxr-xr-x | 3.2 KB |
tophatTemplate.sh | -rwxr-xr-x | 2.0 KB |
utils.py | -rwxr-xr-x | 49.4 KB |