https://github.com/yoheirosen/vg
Tip revision: efe96f8fe66f6417d42b4bce85244f886bde70e5 authored by Erik Garrison on 13 November 2015, 15:29:56 UTC
fix up some missed changes from the position overhaul
fix up some missed changes from the position overhaul
Tip revision: efe96f8
| File | Mode | Size |
|---|---|---|
| bash-tap @ c38fbfa | ||
| fastahack @ c68cebb | ||
| figures | ||
| gcsa2 @ 4a12c6d | ||
| gssw @ 15388d7 | ||
| htslib @ f83dfd2 | ||
| lru_cache @ 4ee97e5 | ||
| progress_bar @ f5cc1d1 | ||
| protobuf @ dfae9e3 | ||
| results | ||
| rocksdb @ 7246ad3 | ||
| scripts | ||
| sdsl-lite @ 25b20b0 | ||
| sha1 @ 6474be9 | ||
| snappy @ 1ff9be9 | ||
| sparsehash @ 80b55f9 | ||
| test | ||
| vcflib @ 7f1575e | ||
| xg @ 4cf7ff4 | ||
| .dockerignore | -rw-r--r-- | 30 bytes |
| .gitignore | -rw-r--r-- | 42 bytes |
| .gitmodules | -rw-r--r-- | 1.2 KB |
| .travis.yml | -rw-r--r-- | 661 bytes |
| Dockerfile | -rw-r--r-- | 687 bytes |
| LICENSE | -rw-r--r-- | 1.1 KB |
| Makefile | -rw-r--r-- | 7.3 KB |
| README.md | -rw-r--r-- | 11.7 KB |
| alignment.cpp | -rw-r--r-- | 29.0 KB |
| alignment.hpp | -rw-r--r-- | 4.8 KB |
| bin2ascii.h | -rw-r--r-- | 5.0 KB |
| caller.cpp | -rw-r--r-- | 14.4 KB |
| caller.hpp | -rw-r--r-- | 6.1 KB |
| colors.hpp | -rw-r--r-- | 737 bytes |
| convert.hpp | -rw-r--r-- | 470 bytes |
| edit.cpp | -rw-r--r-- | 2.7 KB |
| edit.hpp | -rw-r--r-- | 560 bytes |
| entropy.cpp | -rw-r--r-- | 736 bytes |
| entropy.hpp | -rw-r--r-- | 203 bytes |
| gssw_aligner.cpp | -rw-r--r-- | 8.6 KB |
| gssw_aligner.hpp | -rw-r--r-- | 1.2 KB |
| hash_map.hpp | -rw-r--r-- | 2.1 KB |
| index.cpp | -rw-r--r-- | 69.9 KB |
| index.hpp | -rw-r--r-- | 16.8 KB |
| json2pb.cpp | -rw-r--r-- | 8.4 KB |
| json2pb.h | -rw-r--r-- | 3.5 KB |
| main.cpp | -rw-r--r-- | 161.6 KB |
| mapper.cpp | -rw-r--r-- | 53.5 KB |
| mapper.hpp | -rw-r--r-- | 5.2 KB |
| path.cpp | -rw-r--r-- | 45.7 KB |
| path.hpp | -rw-r--r-- | 7.6 KB |
| pictographs.hpp | -rw-r--r-- | 3.7 KB |
| pileup.cpp | -rw-r--r-- | 10.5 KB |
| pileup.hpp | -rw-r--r-- | 6.2 KB |
| position.cpp | -rw-r--r-- | 1.3 KB |
| position.hpp | -rw-r--r-- | 619 bytes |
| region.cpp | -rw-r--r-- | 1.5 KB |
| region.hpp | -rw-r--r-- | 210 bytes |
| stream.hpp | -rw-r--r-- | 6.8 KB |
| swap_remove.hpp | -rw-r--r-- | 497 bytes |
| types.hpp | -rw-r--r-- | 271 bytes |
| utility.cpp | -rw-r--r-- | 8.0 KB |
| utility.hpp | -rw-r--r-- | 1.1 KB |
| vg.cpp | -rw-r--r-- | 254.3 KB |
| vg.hpp | -rw-r--r-- | 42.8 KB |
| vg.proto | -rw-r--r-- | 5.6 KB |
| vg_set.cpp | -rw-r--r-- | 9.3 KB |
| vg_set.hpp | -rw-r--r-- | 2.3 KB |
| vgtordf.sh | -rwxr-xr-x | 884 bytes |
