| chrom | | |
| discreteWavelet | | |
| gatk | | |
| library | | |
| meme | | |
| peakcalling_ccat | | |
| peakcalling_ccat2 | | |
| peakcalling_macs | | |
| peakcalling_sicer | | |
| regVariation | | |
| rgtestouts | | |
| samtools | | |
| users | | |
| variant_detection | | |
| velvetg_test1 | | |
| velveth_test1 | | |
| 1.axt | -rw-r--r-- | 29.0 KB |
| 1.bam | -rw-r--r-- | 3.5 KB |
| 1.bed | -rw-r--r-- | 4.1 KB |
| 1.bed.spaces | -rw-r--r-- | 4.1 KB |
| 1.bigbed | -rw-r--r-- | 150.7 KB |
| 1.bigwig | -rw-r--r-- | 20.7 KB |
| 1.customtrack | -rw-r--r-- | 265 bytes |
| 1.fasta | -rw-r--r-- | 21.1 KB |
| 1.fastq | -rw-r--r-- | 418 bytes |
| 1.fastqsanger | -rw-r--r-- | 177 bytes |
| 1.fastqsolexa | -rw-r--r-- | 418 bytes |
| 1.interval | -rw-r--r-- | 234 bytes |
| 1.lav | -rw-r--r-- | 2.7 KB |
| 1.pileup | -rw-r--r-- | 20.6 KB |
| 1.sam | -rw-r--r-- | 3.4 KB |
| 1.scf | -rwxr-xr-x | 136.2 KB |
| 1.sff | -rw-r--r-- | 100 bytes |
| 1.tabular | -rw-r--r-- | 99 bytes |
| 1.txt | -rw-r--r-- | 208 bytes |
| 1.vcf | -rw-r--r-- | 1.9 MB |
| 1.wig | -rw-r--r-- | 273 bytes |
| 10.bed | -rw-r--r-- | 2.5 KB |
| 1000gsample.fastq | -rw-r--r-- | 746.6 KB |
| 11.bed | -rw-r--r-- | 53.7 KB |
| 12.bed | -rw-r--r-- | 250 bytes |
| 13.bed | -rw-r--r-- | 3.8 KB |
| 1_2_intersect_priority_0.vcf | -rw-r--r-- | 157.6 KB |
| 1_2_intersect_priority_1.vcf | -rw-r--r-- | 160.2 KB |
| 1_2_intersect_priority_2.vcf | -rw-r--r-- | 160.7 KB |
| 1_bed_random_lines_1_seed_asdf_out.bed | -rw-r--r-- | 65 bytes |
| 2.bed | -rw-r--r-- | 4.2 KB |
| 2.bigwig | -rw-r--r-- | 18.6 KB |
| 2.fasta | -rw-r--r-- | 671 bytes |
| 2.fastq | -rw-r--r-- | 255 bytes |
| 2.fastqsanger | -rw-r--r-- | 303 bytes |
| 2.fastqsolexa | -rw-r--r-- | 181 bytes |
| 2.interval | -rw-r--r-- | 501 bytes |
| 2.lav | -rw-r--r-- | 376 bytes |
| 2.pep | -rw-r--r-- | 754 bytes |
| 2.sam | -rw-r--r-- | 1.6 KB |
| 2.sff | -rw-r--r-- | 11.1 KB |
| 2.tabular | -rw-r--r-- | 91 bytes |
| 2.txt | -rw-r--r-- | 171 bytes |
| 2.vcf | -rw-r--r-- | 2.5 MB |
| 2.wig | -rw-r--r-- | 737 bytes |
| 2_mod.bed | -rw-r--r-- | 4.2 KB |
| 2gen.fastq | -rw-r--r-- | 181 bytes |
| 2way.maf | -rw-r--r-- | 396.9 KB |
| 3.bed | -rw-r--r-- | 4.6 KB |
| 3.fasta | -rw-r--r-- | 2.6 KB |
| 3.fastqsanger | -rw-r--r-- | 1.1 KB |
| 3.maf | -rw-r--r-- | 10.7 KB |
| 3.sam | -rw-r--r-- | 1.6 KB |
| 3.wig | -rw-r--r-- | 895 bytes |
| 3_wig.bed | -rw-r--r-- | 824 bytes |
| 3unsorted.bam | -rw-r--r-- | 1.6 KB |
| 3way.maf | -rw-r--r-- | 25.8 KB |
| 4.bed | -rw-r--r-- | 61 bytes |
| 4.bed.bz2 | -rw-r--r-- | 92 bytes |
| 4.bed.gz | -rw-r--r-- | 80 bytes |
| 4.bed.zip | -rw-r--r-- | 198 bytes |
| 4.fasta | -rw-r--r-- | 397 bytes |
| 4.maf | -rw-r--r-- | 19.6 KB |
| 454.fasta | -rw-r--r-- | 3.0 KB |
| 454.qual | -rw-r--r-- | 6.1 KB |
| 454Length.txt | -rw-r--r-- | 104 bytes |
| 454Score.pdf | -rw-r--r-- | 9.9 KB |
| 454Score.png | -rw-r--r-- | 4.3 KB |
| 454_high_quality_hist.pdf | -rw-r--r-- | 6.8 KB |
| 4_windows.bed | -rw-r--r-- | 25.3 KB |
| 4_windows.gff | -rw-r--r-- | 43.5 KB |
| 4_windows_2.bed | -rw-r--r-- | 25.3 KB |
| 4_windows_2.gff | -rw-r--r-- | 43.5 KB |
| 4_windows_3.bed | -rw-r--r-- | 96 bytes |
| 5.bed | -rw-r--r-- | 8.5 KB |
| 5.gff | -rw-r--r-- | 1.8 KB |
| 5.gff3 | -rw-r--r-- | 8.3 KB |
| 5.maf | -rw-r--r-- | 180.4 KB |
| 5_liftover_mapped.bed | -rw-r--r-- | 8.4 KB |
| 5_liftover_unmapped.bed | -rw-r--r-- | 253 bytes |
| 5_mult_liftover_mapped.bed | -rw-r--r-- | 8.4 KB |
| 5_mult_liftover_unmapped.bed | -rw-r--r-- | 162 bytes |
| 6.bed | -rw-r--r-- | 650 bytes |
| 6.maf | -rw-r--r-- | 38.6 KB |
| 6_feature_coverage.bed | -rw-r--r-- | 4.8 KB |
| 6_indels.tabular | -rw-r--r-- | 1.6 KB |
| 6_mask_cpg.maf | -rw-r--r-- | 38.6 KB |
| 6_mask_noncpg.maf | -rw-r--r-- | 38.6 KB |
| 6_quality_filter.maf | -rw-r--r-- | 38.6 KB |
| 7.bed | -rw-r--r-- | 5.4 KB |
| 7.bigbed | -rw-r--r-- | 35.1 KB |
| 8.bed | -rw-r--r-- | 162 bytes |
| 8.tabular | -rw-r--r-- | 749 bytes |
| 9.bed | -rw-r--r-- | 135 bytes |
| 9_hg18.bed | -rw-r--r-- | 118 bytes |
| DNAseHSS.dat | -rw-r--r-- | 72.3 KB |
| Extract_features1_out.gff | -rw-r--r-- | 477 bytes |
| Interval2Maf_pairwise_out.maf | -rw-r--r-- | 7.8 KB |
| Ssuis.fasta | -rwxr-xr-x | 1.9 MB |
| XY_Plot_1_out.pdf | -rw-r--r-- | 2.8 KB |
| a.tab | -rw-r--r-- | 818 bytes |
| a.txt | -rw-r--r-- | 1.3 KB |
| add_scores_input1.interval | -rw-r--r-- | 500 bytes |
| add_scores_input2.bed | -rw-r--r-- | 486 bytes |
| add_scores_output1.interval | -rw-r--r-- | 627 bytes |
| add_scores_output2.interval | -rw-r--r-- | 620 bytes |
| aggregate_binned_scores_3.wig | -rw-r--r-- | 13.5 KB |
| aggregate_binned_scores_in_intervals.bed | -rw-r--r-- | 23 bytes |
| aggregate_binned_scores_in_intervals.out | -rw-r--r-- | 894 bytes |
| aggregate_binned_scores_in_intervals2.interval | -rw-r--r-- | 142 bytes |
| aggregate_binned_scores_in_intervals3.out | -rw-r--r-- | 786 bytes |
| annotation_profiler_1.out | -rw-r--r-- | 721 bytes |
| annotation_profiler_2.out | -rw-r--r-- | 1.0 KB |
| asian_chars_1.txt | -rw-r--r-- | 80 bytes |
| assembly_stats.tabular | -rw-r--r-- | 21 bytes |
| axt_to_concat_fasta.dat | -rw-r--r-- | 27.7 KB |
| axt_to_fasta.dat | -rw-r--r-- | 28.9 KB |
| b1.fasta | -rw-r--r-- | 35.6 KB |
| bam_to_sam_in1.bam | -rw-r--r-- | 671 bytes |
| bam_to_sam_in1.sam | -rw-r--r-- | 2.2 KB |
| bam_to_sam_in2.bam | -rw-r--r-- | 351 bytes |
| bam_to_sam_in2.sam | -rw-r--r-- | 1.4 KB |
| bam_to_sam_out1.sam | -rw-r--r-- | 2.1 KB |
| bam_to_sam_out2.sam | -rw-r--r-- | 1.3 KB |
| bam_to_sam_out3.sam | -rw-r--r-- | 2.2 KB |
| beam_output1.tab | -rw-r--r-- | 94 bytes |
| beam_output2.tab | -rw-r--r-- | 4.4 KB |
| bed2gff_out.gff | -rw-r--r-- | 583 bytes |
| bfast_out1.sam | -rw-r--r-- | 4.3 KB |
| bfast_out2.sam | -rw-r--r-- | 7.7 KB |
| bfast_out3.sam | -rw-r--r-- | 4.2 KB |
| blastp_four_human_vs_rhodopsin.tabular | -rw-r--r-- | 521 bytes |
| blastp_four_human_vs_rhodopsin.xml | -rw-r--r-- | 34.0 KB |
| blastp_four_human_vs_rhodopsin_converted.tabular | -rw-r--r-- | 515 bytes |
| blastp_four_human_vs_rhodopsin_converted_ext.tabular | -rw-r--r-- | 4.9 KB |
| blastp_four_human_vs_rhodopsin_ext.tabular | -rw-r--r-- | 4.9 KB |
| blastp_human_vs_pdb_seg_no.xml | -rw-r--r-- | 26.1 KB |
| blastp_human_vs_pdb_seg_no_converted_ext.tabular | -rw-r--r-- | 8.4 KB |
| blastp_human_vs_pdb_seg_no_converted_std.tabular | -rw-r--r-- | 662 bytes |
| blastp_rhodopsin_vs_four_human.tabular | -rw-r--r-- | 524 bytes |
| blastp_sample.xml | -rw-r--r-- | 22.6 KB |
| blastp_sample_converted.tabular | -rw-r--r-- | 702 bytes |
| blastx_rhodopsin_vs_four_human.tabular | -rw-r--r-- | 900 bytes |
| blastx_rhodopsin_vs_four_human.xml | -rw-r--r-- | 37.7 KB |
| blastx_rhodopsin_vs_four_human_converted.tabular | -rw-r--r-- | 891 bytes |
| blastx_rhodopsin_vs_four_human_converted_ext.tabular | -rw-r--r-- | 5.3 KB |
| blastx_rhodopsin_vs_four_human_ext.tabular | -rw-r--r-- | 5.3 KB |
| blastx_sample.xml | -rwxr-xr-x | 71.8 KB |
| blastx_sample_converted.tabular | -rw-r--r-- | 2.8 KB |
| blat_coverage_report_test1.out | -rw-r--r-- | 70.5 KB |
| blat_coverage_report_test1.txt | -rw-r--r-- | 9.3 KB |
| blat_mapping_test1.out | -rw-r--r-- | 199 bytes |
| blat_mapping_test1.txt | -rw-r--r-- | 195 bytes |
| blat_wrapper_test1.fa | -rw-r--r-- | 4.3 KB |
| blat_wrapper_test1.out | -rw-r--r-- | 9.3 KB |
| bowtie_in1.fastqcssanger | -rw-r--r-- | 214 bytes |
| bowtie_in2.fastqsanger | -rw-r--r-- | 2.9 KB |
| bowtie_in3.fastqcssanger | -rw-r--r-- | 214 bytes |
| bowtie_in4.fastqcssanger | -rw-r--r-- | 219 bytes |
| bowtie_in5.fastqillumina | -rw-r--r-- | 2.2 KB |
| bowtie_in5.fastqsanger | -rw-r--r-- | 2.2 KB |
| bowtie_in5.fastqsolexa | -rw-r--r-- | 2.2 KB |
| bowtie_in6.fastqillumina | -rw-r--r-- | 2.2 KB |
| bowtie_in6.fastqsanger | -rw-r--r-- | 2.2 KB |
| bowtie_in6.fastqsolexa | -rw-r--r-- | 2.2 KB |
| bowtie_out1.sam | -rw-r--r-- | 294 bytes |
| bowtie_out10.sam | -rw-r--r-- | 5.9 KB |
| bowtie_out2.sam | -rw-r--r-- | 608 bytes |
| bowtie_out3_1.fastq | -rw-r--r-- | 142 bytes |
| bowtie_out3_2.fastq | -rw-r--r-- | 147 bytes |
| bowtie_out4.sam | -rw-r--r-- | 298 bytes |
| bowtie_out5.sam | -rw-r--r-- | 600 bytes |
| bowtie_out6.sam | -rw-r--r-- | 4.1 KB |
| bowtie_out7.sam | -rw-r--r-- | 5.9 KB |
| bowtie_out8_1.fastq | -rw-r--r-- | 630 bytes |
| bowtie_out8_1.fastqillumina.sorted | -rw-r--r-- | 630 bytes |
| bowtie_out8_1.fastqsolexa.sorted | -rw-r--r-- | 630 bytes |
| bowtie_out8_2.fastq | -rw-r--r-- | 630 bytes |
| bowtie_out8_2.fastqillumina.sorted | -rw-r--r-- | 630 bytes |
| bowtie_out8_2.fastqsolexa.sorted | -rw-r--r-- | 630 bytes |
| bowtie_out9.sam | -rw-r--r-- | 4.1 KB |
| boxplot_summary_statistics_out.png | -rw-r--r-- | 22.7 KB |
| branchlength_fasta_in.dat | -rw-r--r-- | 2.6 KB |
| branchlength_in.fasta | -rw-r--r-- | 2.6 KB |
| branchlength_out.dat | -rw-r--r-- | 1.7 KB |
| branchlength_out.tabular | -rw-r--r-- | 1.5 KB |
| build_ucsc_custom_track_out1.customtrack | -rw-r--r-- | 721 bytes |
| bwa_wrapper_in1.fastqsanger | -rw-r--r-- | 2.4 KB |
| bwa_wrapper_in2.fastqsanger | -rw-r--r-- | 1.4 KB |
| bwa_wrapper_in3.fastqsanger | -rw-r--r-- | 1.4 KB |
| bwa_wrapper_in4.fastqcssanger | -rw-r--r-- | 23.4 KB |
| bwa_wrapper_in5.fastqcssanger | -rw-r--r-- | 24.1 KB |
| bwa_wrapper_in6.fastqcssanger | -rw-r--r-- | 24.1 KB |
| bwa_wrapper_out1.sam | -rw-r--r-- | 4.1 KB |
| bwa_wrapper_out2.sam | -rw-r--r-- | 4.0 KB |
| bwa_wrapper_out3.sam | -rw-r--r-- | 9.0 KB |
| bwa_wrapper_out4.sam | -rw-r--r-- | 31.5 KB |
| bwa_wrapper_out5.sam | -rw-r--r-- | 63.2 KB |
| bwa_wrapper_out6.sam | -rw-r--r-- | 33.4 KB |
| bwa_wrapper_out7.sam | -rw-r--r-- | 62.6 KB |
| bwa_wrapper_out8.sam | -rw-r--r-- | 8.5 KB |
| cat_wrapper_out1.bed | -rw-r--r-- | 8.3 KB |
| categories.tabular | -rw-r--r-- | 383 bytes |
| categories_criteria.tabular | -rwxr-xr-x | 354 bytes |
| categorized_elements.tabular | -rw-r--r-- | 152 bytes |
| cc.EarlyRepSeg.20051216.bed | -rw-r--r-- | 20.2 KB |
| cca_out1.tabular | -rw-r--r-- | 406 bytes |
| cca_out2.pdf | -rw-r--r-- | 13.2 KB |
| cf-gene2exon.dat | -rw-r--r-- | 12.3 KB |
| cf_maf2fasta.dat | -rw-r--r-- | 14.0 KB |
| cf_maf2fasta_concat.dat | -rw-r--r-- | 2.2 KB |
| cf_maf2fasta_new.dat | -rw-r--r-- | 16.9 KB |
| cf_maf_limit_to_species.dat | -rw-r--r-- | 8.1 KB |
| cf_maf_to_bed.dat | -rw-r--r-- | 360 bytes |
| changeCase_out1.tabular | -rw-r--r-- | 136 bytes |
| changeCase_out2.tabular | -rw-r--r-- | 4.1 KB |
| chipseq_enriched.bed.gz | -rw-r--r-- | 89.3 KB |
| chipseq_input.bed.gz | -rw-r--r-- | 88.9 KB |
| chr22_5sp.maf | -rw-r--r-- | 540.3 KB |
| chr22_5sp.microraw.tabular | -rw-r--r-- | 46.6 KB |
| chr22_5sp.microtab.tabular | -rw-r--r-- | 20.2 KB |
| chrY1.bed | -rw-r--r-- | 29.3 KB |
| chrY2.bed | -rw-r--r-- | 26.2 KB |
| chrY_Coverage.bed | -rw-r--r-- | 34.4 KB |
| chr_m.fasta | -rw-r--r-- | 16.6 KB |
| closest_features.interval | -rw-r--r-- | 100.6 KB |
| closest_features_both.gff | -rw-r--r-- | 68.7 KB |
| closest_features_both.interval | -rw-r--r-- | 35.5 KB |
| closest_features_both2.gff | -rw-r--r-- | 94.9 KB |
| closest_features_down.interval | -rw-r--r-- | 50.3 KB |
| closest_features_either.interval | -rw-r--r-- | 50.5 KB |
| closest_features_up.interval | -rw-r--r-- | 50.3 KB |
| codingSnps_input1.interval | -rw-r--r-- | 819 bytes |
| codingSnps_input2.bed | -rw-r--r-- | 3.6 KB |
| codingSnps_input2.interval | -rw-r--r-- | 556 bytes |
| codingSnps_inputGenes1.bed | -rw-r--r-- | 3.6 KB |
| codingSnps_inputGenes2.bed | -rw-r--r-- | 232.7 KB |
| codingSnps_output.interval | -rw-r--r-- | 1.1 KB |
| codingSnps_output1.interval | -rw-r--r-- | 1.1 KB |
| codingSnps_output2.interval | -rw-r--r-- | 960 bytes |
| column_join_in1.pileup | -rw-r--r-- | 1.6 KB |
| column_join_in10.pileup | -rw-r--r-- | 972 bytes |
| column_join_in11.pileup | -rw-r--r-- | 1.2 KB |
| column_join_in12.pileup | -rw-r--r-- | 1.2 KB |
| column_join_in13.tabular | -rw-r--r-- | 80 bytes |
| column_join_in14.tabular | -rw-r--r-- | 188 bytes |
| column_join_in15.tabular | -rw-r--r-- | 189 bytes |
| column_join_in2.pileup | -rw-r--r-- | 1.6 KB |
| column_join_in3.pileup | -rw-r--r-- | 1.7 KB |
| column_join_in4.pileup | -rw-r--r-- | 635 bytes |
| column_join_in5.pileup | -rw-r--r-- | 656 bytes |
| column_join_in6.pileup | -rw-r--r-- | 610 bytes |
| column_join_in7.pileup | -rw-r--r-- | 899 bytes |
| column_join_in8.pileup | -rw-r--r-- | 586 bytes |
| column_join_in9.pileup | -rw-r--r-- | 610 bytes |
| column_join_out1.pileup | -rw-r--r-- | 2.0 KB |
| column_join_out2.pileup | -rw-r--r-- | 1.0 KB |
| column_join_out3.pileup | -rw-r--r-- | 1.9 KB |
| column_join_out4.pileup | -rw-r--r-- | 1.2 KB |
| column_join_out5.tabular | -rw-r--r-- | 144 bytes |
| column_maker_out1.interval | -rw-r--r-- | 4.5 KB |
| column_maker_out2.interval | -rw-r--r-- | 257 bytes |
| column_maker_out3.interval | -rw-r--r-- | 244 bytes |
| combine_phiX_out_1.fastqcssanger | -rw-r--r-- | 21.7 KB |
| combine_phiX_out_2.fastqcssanger | -rw-r--r-- | 13.0 KB |
| convert_SOLiD_color2nuc_test1.out | -rw-r--r-- | 651 bytes |
| convert_SOLiD_color2nuc_test1.txt | -rw-r--r-- | 661 bytes |
| cor.tabular | -rw-r--r-- | 205 bytes |
| cor_out.txt | -rw-r--r-- | 38 bytes |
| count_gff_features_out1.txt | -rw-r--r-- | 2 bytes |
| count_gff_features_out2.txt | -rw-r--r-- | 3 bytes |
| criteria_elements_data.tabular | -rw-r--r-- | 370 bytes |
| ctdBatchInput.txt | -rw-r--r-- | 9 bytes |
| ctdBatchOut.txt | -rw-r--r-- | 22.7 KB |
| cuffcompare_in1.gtf | -rw-r--r-- | 19.4 KB |
| cuffcompare_in1_liftover_mapped.bed | -rw-r--r-- | 16.7 KB |
| cuffcompare_in1_liftover_unmapped.bed | -rw-r--r-- | 3.0 KB |
| cuffcompare_in1_mult_liftover_mapped.bed | -rw-r--r-- | 17.8 KB |
| cuffcompare_in1_mult_liftover_unmapped.bed | -rw-r--r-- | 1.7 KB |
| cuffcompare_in2.gtf | -rw-r--r-- | 19.4 KB |
| cuffcompare_in3.gtf | -rw-r--r-- | 9.2 KB |
| cuffcompare_out1.tmap | -rw-r--r-- | 4.3 KB |
| cuffcompare_out2.refmap | -rw-r--r-- | 73 bytes |
| cuffcompare_out3.tmap | -rw-r--r-- | 4.4 KB |
| cuffcompare_out4.refmap | -rw-r--r-- | 43 bytes |
| cuffcompare_out5.gtf | -rw-r--r-- | 16.5 KB |
| cuffcompare_out6.tracking | -rw-r--r-- | 10.1 KB |
| cuffcompare_out7.txt | -rw-r--r-- | 1.4 KB |
| cuffdiff_in1.sam | -rw-r--r-- | 50.0 KB |
| cuffdiff_in2.sam | -rw-r--r-- | 50.0 KB |
| cuffdiff_out1.txt | -rw-r--r-- | 8.5 KB |
| cuffdiff_out10.txt | -rw-r--r-- | 6.6 KB |
| cuffdiff_out11.txt | -rw-r--r-- | 115 bytes |
| cuffdiff_out2.txt | -rw-r--r-- | 8.0 KB |
| cuffdiff_out3.txt | -rw-r--r-- | 7.7 KB |
| cuffdiff_out4.txt | -rw-r--r-- | 124 bytes |
| cuffdiff_out5.txt | -rw-r--r-- | 8.6 KB |
| cuffdiff_out6.txt | -rw-r--r-- | 7.8 KB |
| cuffdiff_out7.txt | -rw-r--r-- | 7.4 KB |
| cuffdiff_out8.txt | -rw-r--r-- | 91 bytes |
| cuffdiff_out9.txt | -rw-r--r-- | 6.2 KB |
| cufflinks_in.bam | -rw-r--r-- | 4.8 KB |
| cufflinks_out1.gtf | -rw-r--r-- | 887 bytes |
| cufflinks_out2.fpkm_tracking | -rw-r--r-- | 232 bytes |
| cufflinks_out3.fpkm_tracking | -rw-r--r-- | 222 bytes |
| cufflinks_out4.txt | -rw-r--r-- | 11 bytes |
| cuffmerge_out1.gtf | -rw-r--r-- | 13.6 KB |
| customTrack1.bed | -rw-r--r-- | 623 bytes |
| customTrack2.bed | -rw-r--r-- | 10.6 KB |
| dbsnp.small.vcf | -rw-r--r-- | 171.7 KB |
| dna_filter_in1.tabular | -rw-r--r-- | 2.9 KB |
| dna_filter_out1.tabular | -rw-r--r-- | 2.1 KB |
| dna_filter_out2.tabular | -rw-r--r-- | 1.9 KB |
| dna_filter_out3.tabular | -rw-r--r-- | 2.5 KB |
| dna_filter_out4.tabular | -rw-r--r-- | 370 bytes |
| dnds_inp.fasta | -rw-r--r-- | 60.0 KB |
| dnds_out.tabular | -rw-r--r-- | 1.3 KB |
| droPer1.bed | -rw-r--r-- | 120 bytes |
| droPer1.dat | -rw-r--r-- | 234 bytes |
| emboss_antigenic_out.tabular | -rw-r--r-- | 667 bytes |
| emboss_backtranseq_out.fasta | -rw-r--r-- | 1.7 KB |
| emboss_banana_out.txt | -rw-r--r-- | 11.5 KB |
| emboss_biosed_out.fasta | -rw-r--r-- | 625 bytes |
| emboss_btwisted_out.btwisted | -rw-r--r-- | 233 bytes |
| emboss_cai_out.cai | -rw-r--r-- | 29 bytes |
| emboss_charge_out.charge | -rw-r--r-- | 7.0 KB |
| emboss_chips_out.chips | -rw-r--r-- | 44 bytes |
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| emboss_cpgreport_out1.gff | -rw-r--r-- | 781 bytes |
| emboss_cpgreport_out2.cpgreport | -rw-r--r-- | 738 bytes |
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| emboss_primersearch.fasta | -rw-r--r-- | 329 bytes |
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| emboss_revseq_out.fasta | -rw-r--r-- | 625 bytes |
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| emboss_union_out.fasta | -rw-r--r-- | 625 bytes |
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| fasta_to_tabular_out1.tabular | -rw-r--r-- | 2.9 KB |
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| fasta_tool_filter_length_1.out | -rw-r--r-- | 3.0 KB |
| fastq_combiner_in_1.fasta | -rw-r--r-- | 552 bytes |
| fastq_combiner_in_1.qual454 | -rw-r--r-- | 560 bytes |
| fastq_combiner_no_qual_ascii_out_1.fastqcssanger | -rw-r--r-- | 13.0 KB |
| fastq_combiner_no_qual_decimal_out_1.fastqsanger | -rw-r--r-- | 1.7 KB |
| fastq_conv_in1.fastq | -rw-r--r-- | 109 bytes |
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| fastq_conv_out2.fastqsolexa | -rw-r--r-- | 178 bytes |
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| fastq_gen_conv_in1.fastq | -rw-r--r-- | 416 bytes |
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| fastq_to_fasta1.fastq | -rw-r--r-- | 1.2 KB |
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| fastq_to_fasta_python_1.out | -rw-r--r-- | 356 bytes |
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| fastq_to_tabular_out_1.tabular | -rw-r--r-- | 544 bytes |
| fastq_to_tabular_out_2.tabular | -rw-r--r-- | 546 bytes |
| fastq_to_tabular_out_3.tabular | -rw-r--r-- | 544 bytes |
| fastq_trimmer_out1.fastqsanger | -rw-r--r-- | 190 bytes |
| fastqc_contaminants.txt | -rw-r--r-- | 11.9 KB |
| fastqc_data.txt | -rw-r--r-- | 11.6 KB |
| fastqc_report.html | -rw-r--r-- | 26.5 KB |
| fastqsolexa_to_fasta_qual_out2.fasta | -rw-r--r-- | 84 bytes |
| fastqsolexa_to_fasta_qual_out4.fasta | -rw-r--r-- | 146 bytes |
| fastx_artifacts1.fasta | -rw-r--r-- | 844 bytes |
| fastx_artifacts1.out | -rw-r--r-- | 492 bytes |
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| fastx_barcode_splitter1.fastq | -rw-r--r-- | 3.9 KB |
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| fastx_barcode_splitter1.txt | -rw-r--r-- | 39 bytes |
| fastx_clipper1.fastq | -rw-r--r-- | 1.2 KB |
| fastx_clipper1a.out | -rw-r--r-- | 608 bytes |
| fastx_rev_comp1.fasta | -rw-r--r-- | 141 bytes |
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| fastx_trimmer1.fasta | -rw-r--r-- | 141 bytes |
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| fastx_trimmer2.fastq | -rw-r--r-- | 411 bytes |
| fastx_trimmer2.out | -rw-r--r-- | 346 bytes |
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| filter1_test1.bed | -rw-r--r-- | 260 bytes |
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| filter1_test3.sam | -rw-r--r-- | 815 bytes |
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| filteredJoinedFlanksDNAse.dat | -rw-r--r-- | 145 bytes |
| find_diag_hits.tabular | -rw-r--r-- | 30 bytes |
| flankingSequencesWindows0.tabular | -rwxr-xr-x | 376.3 KB |
| flankingSequencesWindows10.tabular | -rwxr-xr-x | 413.5 KB |
| flankingSequencesWindows10_2.tabular | -rwxr-xr-x | 413.5 KB |
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| flanks_out1.bed | -rw-r--r-- | 176.2 KB |
| flanks_out2.bed | -rw-r--r-- | 88.1 KB |
| four_human_proteins.fasta | -rw-r--r-- | 3.6 KB |
| fr.csfasta | -rw-r--r-- | 33.2 KB |
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| fsa_extract_blastz_alignments.dat | -rw-r--r-- | 40.4 KB |
| fsa_interval2maf.dat | -rw-r--r-- | 443.7 KB |
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| gd.extract_primers.txt | -rw-r--r-- | 4.0 KB |
| gd.sample.wsf | -rw-r--r-- | 1.0 KB |
| gd.select_restriction_enzymes.wsf | -rw-r--r-- | 409 bytes |
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| gene_association_mgi_test.gaf | -rw-r--r-- | 12.0 KB |
| gene_bed_maf_to_fasta_out.fasta | -rw-r--r-- | 7.3 KB |
| gene_bed_maf_to_fasta_user_out.dat | -rw-r--r-- | 153.0 KB |
| gene_bed_maf_to_fasta_user_out.fasta | -rw-r--r-- | 2.9 KB |
| genoTestfile.map | -rw-r--r-- | 246 bytes |
| genoTestfile.ped | -rw-r--r-- | 664 bytes |
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| gff_filter_attr_in1.gff | -rw-r--r-- | 40.7 KB |
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| gff_filter_by_attribute_out2.gff | -rw-r--r-- | 32.7 KB |
| gff_filter_by_feature_count_out1.gff | -rw-r--r-- | 8.5 KB |
| gff_filter_by_feature_count_out2.gff | -rw-r--r-- | 3.7 KB |
| gops-cluster-1.bed | -rw-r--r-- | 550 bytes |
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| gops_bigint.interval | -rw-r--r-- | 456 bytes |
| gops_bigint2.interval | -rw-r--r-- | 406 bytes |
| gops_cluster_bigint.bed | -rw-r--r-- | 8.6 KB |
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| gops_complement_out2.bed | -rw-r--r-- | 137 bytes |
| gops_complement_out_diffCols.dat | -rw-r--r-- | 2.5 KB |
| gops_concat_out1.bed | -rw-r--r-- | 8.3 KB |
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| gops_coverage_out.interval | -rw-r--r-- | 4.6 KB |
| gops_coverage_out2.interval | -rw-r--r-- | 476 bytes |
| gops_coverage_out_diffCols.interval | -rw-r--r-- | 4.6 KB |
| gops_intersect_bigint_out.interval | -rw-r--r-- | 407 bytes |
| gops_intersect_diffCols.bed | -rw-r--r-- | 3.1 KB |
| gops_intersect_no_strand_out.bed | -rw-r--r-- | 25 bytes |
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| gops_intersect_out2.gff | -rw-r--r-- | 87.8 KB |
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| gops_merge_diffCols.dat | -rw-r--r-- | 1.6 KB |
| gops_merge_out2.bed | -rw-r--r-- | 120 bytes |
| gops_subtract_bigint.bed | -rw-r--r-- | 4.2 KB |
| gops_subtract_diffCols.dat | -rw-r--r-- | 1.0 KB |
| gops_subtract_in1.gff | -rw-r--r-- | 100.6 KB |
| gops_subtract_in2.bed | -rw-r--r-- | 15.7 KB |
| gops_subtract_in2.gff | -rw-r--r-- | 97.3 KB |
| gops_subtract_out1.gff | -rw-r--r-- | 12.9 KB |
| gpass_and_beam_input.map | -rw-r--r-- | 901 bytes |
| gpass_and_beam_input.ped | -rw-r--r-- | 256.8 KB |
| gpass_output.txt | -rw-r--r-- | 369 bytes |
| groupby_out1.dat | -rw-r--r-- | 347 bytes |
| groupby_out2.dat | -rw-r--r-- | 24 bytes |
| groupby_out3.tabular | -rw-r--r-- | 2.1 KB |
| gsummary_out1.tabular | -rw-r--r-- | 124 bytes |
| gtf2bedgraph_in.gtf | -rw-r--r-- | 20.4 KB |
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| gtf_filter_by_attribute_values_list_in1.txt | -rw-r--r-- | 33 bytes |
| gtf_filter_by_attribute_values_list_in2.gtf | -rw-r--r-- | 15.8 KB |
| gtf_filter_by_attribute_values_list_in3.tabular | -rw-r--r-- | 969 bytes |
| gtf_filter_by_attribute_values_list_out1.gtf | -rw-r--r-- | 1.8 KB |
| gtf_filter_by_attribute_values_list_out2.gtf | -rw-r--r-- | 7.6 KB |
| hapmap.small.vcf | -rw-r--r-- | 160.1 KB |
| hg17chr22KnownGenes.dat | -rw-r--r-- | 137.7 KB |
| hg19chrX_midpart.fasta | -rw-r--r-- | 37.4 KB |
| histogram_in1.tabular | -rw-r--r-- | 91 bytes |
| histogram_out1.pdf | -rw-r--r-- | 8.5 KB |
| html_file.txt | -rw-r--r-- | 3.5 KB |
| hvis_mkar_chr22.pdf | -rw-r--r-- | 8.8 MB |
| hvis_mkar_chr22.tab | -rw-r--r-- | 3.2 MB |
| illumina_full_range_as_cssanger.fastqcssanger | -rw-r--r-- | 428 bytes |
| illumina_full_range_as_sanger.fastqsanger | -rw-r--r-- | 426 bytes |
| illumina_full_range_as_solexa.fastqsolexa | -rw-r--r-- | 426 bytes |
| illumina_full_range_original_illumina.fastqillumina | -rw-r--r-- | 426 bytes |
| indel_analysis_in1.sam | -rw-r--r-- | 2.6 KB |
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| indel_analysis_out1.interval | -rw-r--r-- | 130 bytes |
| indel_analysis_out2.interval | -rw-r--r-- | 185 bytes |
| indel_analysis_out3.interval | -rw-r--r-- | 112 bytes |
| indel_analysis_out4.interval | -rw-r--r-- | 134 bytes |
| indel_sam2interval_in1.sam | -rw-r--r-- | 3.1 KB |
| indel_sam2interval_out1.interval | -rw-r--r-- | 244 bytes |
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| indel_table_in1.interval | -rw-r--r-- | 115 bytes |
| indel_table_in2.interval | -rw-r--r-- | 120 bytes |
| indel_table_in3.interval | -rw-r--r-- | 195 bytes |
| indel_table_out1.interval | -rw-r--r-- | 387 bytes |
| indelrates_3way.tabular | -rw-r--r-- | 886 bytes |
| indels1.tabular | -rwxr-xr-x | 133.3 KB |
| indelsFlankingSequences1.tabular | -rwxr-xr-x | 378.2 KB |
| indels_3way.tabular | -rw-r--r-- | 18.5 KB |
| interpolate_result.bed | -rwxr-xr-x | 8.5 KB |
| interval2maf_3from28way.maf | -rw-r--r-- | 96.6 KB |
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| interval_maf_to_merged_fasta_out.dat | -rw-r--r-- | 92.1 KB |
| interval_maf_to_merged_fasta_out3.fasta | -rw-r--r-- | 97.4 KB |
| interval_maf_to_merged_fasta_user_out.dat | -rw-r--r-- | 92.1 KB |
| iris.tabular | -rw-r--r-- | 4.4 KB |
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| kcca_out1.tabular | -rw-r--r-- | 18.6 KB |
| kcca_out2.tabular | -rw-r--r-- | 10.2 KB |
| knownGeneUpstream500Flanks.dat | -rw-r--r-- | 137.7 KB |
| kpca_out1.tabular | -rw-r--r-- | 5.6 KB |
| kpca_out2.pdf | -rw-r--r-- | 23.3 KB |
| lastz_census.txt | -rw-r--r-- | 72.6 KB |
| lastz_diffs.txt | -rw-r--r-- | 2.6 KB |
| lastz_diffs_ref_name.txt | -rw-r--r-- | 2.6 KB |
| lastz_maf.txt | -rw-r--r-- | 61.5 KB |
| lastz_paired_input2.fasta | -rw-r--r-- | 40.0 KB |
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| lastz_paired_input4.qual454 | -rw-r--r-- | 99.5 KB |
| lastz_paired_out1.sam | -rw-r--r-- | 245 bytes |
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| lastz_wrapper_out4.tabular | -rw-r--r-- | 110.9 KB |
| lav_to_bed_out_1.bed | -rw-r--r-- | 66 bytes |
| lav_to_bed_out_2.bed | -rw-r--r-- | 68 bytes |
| lca_input.taxonomy | -rw-r--r-- | 912 bytes |
| lca_input2.taxonomy | -rw-r--r-- | 936 bytes |
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| ldInput1.txt | -rw-r--r-- | 100.0 KB |
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| lda_analy_output.txt | -rw-r--r-- | 8.6 KB |
| linkToDavid.tabular | -rw-r--r-- | 54 bytes |
| linkToDavid_1.out | -rw-r--r-- | 266 bytes |
| linkToGProfile.tabular | -rw-r--r-- | 75 bytes |
| linkToGProfile_1.out | -rw-r--r-- | 430 bytes |
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| lped_to_geno_output1.txt | -rw-r--r-- | 327 bytes |
| lped_to_ld_output1.tab | -rw-r--r-- | 952 bytes |
| lped_to_snps_output1.interval | -rw-r--r-- | 1.3 KB |
| lps_arrhythmia.tabular | -rw-r--r-- | 359.0 KB |
| lps_arrhythmia_beta.tabular | -rw-r--r-- | 6.1 KB |
| lps_arrhythmia_log.txt | -rw-r--r-- | 8.0 KB |
| maf_by_block_number_out.dat | -rw-r--r-- | 4.5 KB |
| maf_by_block_numbers.dat | -rw-r--r-- | 8 bytes |
| maf_limit_size1_out.maf | -rw-r--r-- | 10.7 KB |
| maf_reverse_complement_out.dat | -rw-r--r-- | 10.7 KB |
| maf_split_by_species_collapsed_out.maf | -rw-r--r-- | 4.7 KB |
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| maf_stats_interval_in.dat | -rw-r--r-- | 49 bytes |
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| maf_stats_summary_out.dat | -rw-r--r-- | 183 bytes |
| maf_thread_for_species.dat | -rw-r--r-- | 4.1 KB |
| maf_to_interval_out_hg17.interval | -rw-r--r-- | 2.2 KB |
| maf_to_interval_out_panTro1.interval | -rw-r--r-- | 2.2 KB |
| masterVarTest.txt | -rw-r--r-- | 381.7 KB |
| masterVar_output.txt | -rw-r--r-- | 859 bytes |
| matrix_generator_for_pc_and_lda_input_1.tabular | -rw-r--r-- | 16.8 KB |
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| megablast_wrapper_test1.fa | -rw-r--r-- | 869 bytes |
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| megablast_xml_parser_test1.gz | -rw-r--r-- | 6.6 KB |
| megablast_xml_parser_test1_out.tabular | -rw-r--r-- | 18.2 KB |
| mergeCols.dat | -rw-r--r-- | 6.8 KB |
| misc_dna_as_sanger_rev_comp_1.fastqsanger | -rw-r--r-- | 767 bytes |
| misc_dna_original_sanger.fastqsanger | -rw-r--r-- | 767 bytes |
| misc_rna_as_sanger_rev_comp_1.fastqsanger | -rw-r--r-- | 774 bytes |
| misc_rna_original_sanger.fastqsanger | -rw-r--r-- | 774 bytes |
| mosaik_test_input.fastq | -rw-r--r-- | 55.0 KB |
| mosaik_test_out.sam | -rw-r--r-- | 68.8 KB |
| mosaik_test_ref.fasta | -rw-r--r-- | 92.3 KB |
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| motifFrequencies_every_indels0.tabular | -rwxr-xr-x | 492.5 KB |
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| mutation_data1.txt | -rw-r--r-- | 11.3 KB |
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| ngs_simulation_in1.fasta | -rw-r--r-- | 2.8 KB |
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| nj_tree_inp.fasta | -rw-r--r-- | 14.0 KB |
| nj_tree_newick_out.dat | -rw-r--r-- | 4.0 KB |
| nj_tree_newick_out.tabular | -rw-r--r-- | 4.0 KB |
| nj_tree_pdf_out.pdf | -rw-r--r-- | 9.5 KB |
| non_overlapping_indels1.tabular | -rwxr-xr-x | 51.4 KB |
| numericalTable1.tabular | -rwxr-xr-x | 136 bytes |
| ortho_ms.tab | -rw-r--r-- | 15.0 KB |
| ortho_ms_mut.tab | -rw-r--r-- | 6.5 KB |
| p_q_hists_Q_plots.pdf | -rwxr-xr-x | 16.1 KB |
| p_values.tabular | -rwxr-xr-x | 1.2 KB |
| paired_end_1.fastqsanger | -rw-r--r-- | 1.1 KB |
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| paired_end_1_cleaned_singles.fastqsanger | -rw-r--r-- | 228 bytes |
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| paired_end_merged_errors.fastqsanger | -rw-r--r-- | 2.2 KB |
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| pca_out1.tabular | -rw-r--r-- | 5.1 KB |
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| pca_out6.pdf | -rw-r--r-- | 13.7 KB |
| perm_in1.fastqsanger | -rw-r--r-- | 2.6 KB |
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| perm_in3.fastqsanger | -rw-r--r-- | 11.0 KB |
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| perm_out1.sam | -rw-r--r-- | 5.8 KB |
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| perm_out3.fastqsanger | -rw-r--r-- | 114 bytes |
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| perm_out5.sam | -rw-r--r-- | 2.4 KB |
| phastOdds_tool_out.interval | -rw-r--r-- | 77 bytes |
| phiX.fasta | -rw-r--r-- | 5.3 KB |
| phiX_split.fasta | -rw-r--r-- | 5.3 KB |
| picard_ARRG_input1.bam | -rw-r--r-- | 351 bytes |
| picard_ARRG_input1.sam | -rw-r--r-- | 1.4 KB |
| picard_ARRG_input2.sam | -rw-r--r-- | 1.2 KB |
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| picard_ARRG_output2.bam | -rw-r--r-- | 331 bytes |
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| picard_ARRG_output3.bam | -rw-r--r-- | 355 bytes |
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| picard_BIS_input1.bam | -rw-r--r-- | 769 bytes |
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| picard_BIS_output1.txt | -rw-r--r-- | 2.6 KB |
| picard_BIS_output2.txt | -rw-r--r-- | 2.8 KB |
| picard_MD_output1.txt | -rw-r--r-- | 1.9 KB |
| picard_MD_output2.bam | -rw-r--r-- | 679 bytes |
| picard_MD_output3.txt | -rw-r--r-- | 1.9 KB |
| picard_MD_output4.sam | -rw-r--r-- | 1.4 KB |
| picard_RSH_input1.bam | -rw-r--r-- | 685 bytes |
| picard_RSH_input1.sam | -rw-r--r-- | 2.2 KB |
| picard_RSH_output1.sam | -rw-r--r-- | 2.2 KB |
| picard_RSH_output2.bam | -rw-r--r-- | 685 bytes |
| picard_RSH_output2.sam | -rw-r--r-- | 2.2 KB |
| picard_RS_input1.bam | -rw-r--r-- | 999 bytes |
| picard_RS_input2.sam | -rw-r--r-- | 3.6 KB |
| picard_RS_input3.bam | -rw-r--r-- | 1.0 KB |
| picard_RS_input3.sam | -rw-r--r-- | 3.6 KB |
| picard_RS_input4.fasta | -rw-r--r-- | 5.4 KB |
| picard_RS_output1.bam | -rw-r--r-- | 1012 bytes |
| picard_RS_output2.sam | -rw-r--r-- | 3.7 KB |
| picard_RS_output3.sam | -rw-r--r-- | 4.1 KB |
| picard_fastq_to_sam_out1.bam | -rw-r--r-- | 511 bytes |
| picard_fastq_to_sam_out2.bam | -rw-r--r-- | 863 bytes |
| picard_input_bait.bed | -rw-r--r-- | 376 bytes |
| picard_input_coordinate_sorted.bam | -rw-r--r-- | 242 bytes |
| picard_input_hg18.trimmed.fasta | -rw-r--r-- | 17.1 KB |
| picard_input_sorted_pair.bam | -rw-r--r-- | 714 bytes |
| picard_input_sorted_pair.sam | -rw-r--r-- | 819 bytes |
| picard_input_summary_alignment_stats.sam | -rw-r--r-- | 4.7 KB |
| picard_input_tiny.sam | -rw-r--r-- | 2.2 KB |
| picard_input_tiny_coord.bam | -rw-r--r-- | 671 bytes |
| picard_input_tiny_coord.sam | -rw-r--r-- | 2.2 KB |
| picard_output_AsMetrics_indexed_hg18_sorted_pair.html | -rw-r--r-- | 5.2 KB |
| picard_output_GcBias_uploaded_hg18_summary_alignment_stats.html | -rw-r--r-- | 4.7 KB |
| picard_output_alignment_summary_metrics.html | -rw-r--r-- | 5.6 KB |
| picard_output_collect_AS_sorted_pair.txt | -rw-r--r-- | 1.5 KB |
| picard_output_estlibcomplexity_tinysam.html | -rw-r--r-- | 3.8 KB |
| picard_output_fixmate_sorted_pair.bam | -rw-r--r-- | 233 bytes |
| picard_output_fixmate_sorted_pair.sam | -rw-r--r-- | 779 bytes |
| picard_output_fixmate_tiny.bam | -rw-r--r-- | 667 bytes |
| picard_output_gc_summary_alignment_stats.pdf | -rw-r--r-- | 17.5 KB |
| picard_output_gc_summary_alignment_stats.txt | -rw-r--r-- | 2.3 KB |
| picard_output_hs_transposed_summary_alignment_stats.html | -rw-r--r-- | 15.8 KB |
| picard_output_insertsize_tinysam.html | -rw-r--r-- | 5.3 KB |
| picard_output_markdups_remdupes.bam | -rw-r--r-- | 599 bytes |
| picard_output_markdups_sortedpairsam.bam | -rw-r--r-- | 679 bytes |
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| picard_output_markdups_sortedpairsam.sam | -rw-r--r-- | 3.8 KB |
| picard_output_validate_tiny_sam.html | -rw-r--r-- | 4.4 KB |
| picard_summary_alignment_stats.sam | -rw-r--r-- | 4.7 KB |
| pileup_interval_in1.tabular | -rw-r--r-- | 2.1 KB |
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| pileup_interval_out1.tabular | -rw-r--r-- | 174 bytes |
| pileup_interval_out2.tabular | -rw-r--r-- | 227 bytes |
| pileup_parser.10col.20-3-yes-yes-yes-no.pileup.out | -rw-r--r-- | 3.6 KB |
| pileup_parser.10col.20-3-yes-yes-yes-yes.pileup.out | -rw-r--r-- | 17.4 KB |
| pileup_parser.10col.20-3-yes-yes.pileup.out | -rw-r--r-- | 17.2 KB |
| pileup_parser.10col.pileup | -rw-r--r-- | 121.9 KB |
| pileup_parser.6col.20-3-no-no.pileup.out | -rw-r--r-- | 18.9 KB |
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| pileup_parser.6col.40-3-yes-yes.pileup.out | -rw-r--r-- | 37 bytes |
| pileup_parser.6col.pileup | -rw-r--r-- | 20.6 KB |
| plot_for_lda_output.pdf | -rw-r--r-- | 9.6 KB |
| poisson2test1.tabular | -rw-r--r-- | 84 bytes |
| poisson2test1_out.tabular | -rw-r--r-- | 327 bytes |
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| q_values.tabular | -rwxr-xr-x | 2.4 KB |
| qualscores.qual454 | -rw-r--r-- | 5.6 KB |
| qualscores.qualsolid | -rw-r--r-- | 2.5 KB |
| qualsolid.stats | -rw-r--r-- | 1.6 KB |
| random_phiX_1.fastqcssanger | -rw-r--r-- | 2.5 KB |
| random_phiX_1.fastqsanger | -rw-r--r-- | 2.5 KB |
| rcve_out.dat | -rw-r--r-- | 184 bytes |
| reg_inp.tab | -rw-r--r-- | 1.8 KB |
| regr_inp.tabular | -rw-r--r-- | 82 bytes |
| regr_out.pdf | -rw-r--r-- | 28.2 KB |
| regr_out.tabular | -rw-r--r-- | 287 bytes |
| rgCaCotest1_CaCo.xls | -rw-r--r-- | 1.9 KB |
| rgCaCotest1_CaCo_log.txt | -rw-r--r-- | 2.1 KB |
| rgCaCotest1_CaCo_topTable.gff | -rw-r--r-- | 1.8 KB |
| rgClustal_testin.fasta | -rw-r--r-- | 1.2 KB |
| rgClustal_testout.fasta | -rw-r--r-- | 1.1 KB |
| rgClustal_testout.log | -rw-r--r-- | 4.7 KB |
| rgGLMtest1_GLM.xls | -rw-r--r-- | 1.1 KB |
| rgGLMtest1_GLM_log.txt | -rw-r--r-- | 3.0 KB |
| rgGLMtest1_GLM_topTable.gff | -rw-r--r-- | 1.7 KB |
| rgQQtest1.pdf | -rw-r--r-- | 9.8 KB |
| rgTDTtest1_TDT.xls | -rw-r--r-- | 1.4 KB |
| rgTDTtest1_TDT_log.txt | -rw-r--r-- | 2.3 KB |
| rgTDTtest1_TDT_topTable.gff | -rw-r--r-- | 1.7 KB |
| rgWebLogo3_test.jpg | -rw-r--r-- | 21.1 KB |
| rgWebLogo3_test2.png | -rw-r--r-- | 26.6 KB |
| rgenetics.bed | -rw-r--r-- | 253 bytes |
| rgenetics.bim | -rw-r--r-- | 700 bytes |
| rgenetics.fam | -rw-r--r-- | 603 bytes |
| rgenetics.map | -rw-r--r-- | 600 bytes |
| rgenetics.ped | -rw-r--r-- | 4.5 KB |
| rhodopsin_nucs.fasta | -rw-r--r-- | 10.7 KB |
| rhodopsin_proteins.fasta | -rw-r--r-- | 2.4 KB |
| rmap_wrapper_test1.bed | -rw-r--r-- | 187 bytes |
| rmap_wrapper_test1.fasta | -rw-r--r-- | 431 bytes |
| rmapq_wrapper_test1.bed | -rw-r--r-- | 187 bytes |
| rmapq_wrapper_test1.fasta | -rw-r--r-- | 431 bytes |
| rmapq_wrapper_test1.qual | -rw-r--r-- | 7.0 KB |
| rr.csfasta | -rw-r--r-- | 33.2 KB |
| rr.qualsolid | -rw-r--r-- | 76.0 KB |
| s2fq_out1.fastqsanger | -rw-r--r-- | 12.4 KB |
| s2fq_out2.fastqsanger | -rw-r--r-- | 3.2 KB |
| s2fq_out3.fastqsanger | -rw-r--r-- | 3.2 KB |
| s2fq_paired_F3.csfasta | -rw-r--r-- | 2.5 KB |
| s2fq_paired_F3_QV.qualsolid | -rw-r--r-- | 3.9 KB |
| s2fq_paired_R3.csfasta | -rw-r--r-- | 2.5 KB |
| s2fq_paired_R3_QV.qualsolid | -rw-r--r-- | 3.9 KB |
| s2fq_phiX.csfasta | -rw-r--r-- | 7.7 KB |
| s2fq_phiX.qualsolid | -rw-r--r-- | 16.3 KB |
| sam2interval-test3.sam | -rw-r--r-- | 214.1 KB |
| sam2interval_noprintAll.dat | -rw-r--r-- | 133 bytes |
| sam2interval_printAll.dat | -rw-r--r-- | 383 bytes |
| sam2interval_with_unmapped_reads_noprintAll.dat | -rw-r--r-- | 34.9 KB |
| sam_bioinf_example.sam | -rw-r--r-- | 280 bytes |
| sam_bw_filter.sam | -rw-r--r-- | 215.3 KB |
| sam_bw_filter_0002-yes.sam | -rw-r--r-- | 140.5 KB |
| sam_indel_filter_in1.sam | -rw-r--r-- | 2.8 KB |
| sam_indel_filter_in2.sam | -rw-r--r-- | 2.9 KB |
| sam_indel_filter_out1.sam | -rw-r--r-- | 706 bytes |
| sam_indel_filter_out2.sam | -rw-r--r-- | 198 bytes |
| sam_indel_filter_out3.sam | -rw-r--r-- | 1.4 KB |
| sam_merge_in1.bam | -rw-r--r-- | 185 bytes |
| sam_merge_in2.bam | -rw-r--r-- | 183 bytes |
| sam_merge_in3.bam | -rw-r--r-- | 184 bytes |
| sam_merge_out1.bam | -rw-r--r-- | 281 bytes |
| sam_merge_out1.log | -rw-r--r-- | 816 bytes |
| sam_merge_out2.bam | -rw-r--r-- | 321 bytes |
| sam_merge_out2.log | -rw-r--r-- | 816 bytes |
| sam_pileup_in1.bam | -rw-r--r-- | 3.5 KB |
| sam_pileup_out1.pileup | -rw-r--r-- | 59.7 KB |
| sam_pileup_out2.pileup | -rw-r--r-- | 91.4 KB |
| sam_to_bam_in1.sam | -rw-r--r-- | 1.7 KB |
| sam_to_bam_out1.bam | -rw-r--r-- | 610 bytes |
| sam_to_bam_out2.bam | -rw-r--r-- | 610 bytes |
| sample1.tabular | -rwxr-xr-x | 4.2 KB |
| sample2.tabular | -rwxr-xr-x | 4.2 KB |
| samtools_flagstat_out1.txt | -rw-r--r-- | 340 bytes |
| sanger_full_range_as_cssanger.fastqcssanger | -rw-r--r-- | 552 bytes |
| sanger_full_range_as_cssanger_adapter_base_with_quality_score.fastqcssanger_fake_score | -rw-r--r-- | 554 bytes |
| sanger_full_range_as_decimal_sanger.fastqsanger | -rw-r--r-- | 906 bytes |
| sanger_full_range_as_illumina.fastqillumina | -rw-r--r-- | 550 bytes |
| sanger_full_range_as_rna.fastqsanger | -rw-r--r-- | 550 bytes |
| sanger_full_range_as_solexa.fastqsolexa | -rw-r--r-- | 550 bytes |
| sanger_full_range_as_tab_decimal_sanger.fastqsanger | -rw-r--r-- | 906 bytes |
| sanger_full_range_empty_reads.fastqsanger | -rw-r--r-- | 174 bytes |
| sanger_full_range_masked_N.fastqsanger | -rw-r--r-- | 550 bytes |
| sanger_full_range_masked_lowercase.fastqsanger | -rw-r--r-- | 550 bytes |
| sanger_full_range_original_sanger.fastqsanger | -rw-r--r-- | 550 bytes |
| sanger_full_range_quality_trimmed_out_1.fastqsanger | -rw-r--r-- | 470 bytes |
| sanger_full_range_quality_trimmed_out_2.fastqsanger | -rw-r--r-- | 510 bytes |
| sanger_full_range_quality_trimmed_out_3.fastqsanger | -rw-r--r-- | 510 bytes |
| sanger_full_range_rev_comp.fastqsanger | -rw-r--r-- | 550 bytes |
| sanger_full_range_rev_comp_1_seq.fastqsanger | -rw-r--r-- | 550 bytes |
| sc_3D_cds.bed | -rw-r--r-- | 91.5 KB |
| scatterplot_in1.tabular | -rw-r--r-- | 91 bytes |
| scatterplot_out1.pdf | -rw-r--r-- | 3.1 KB |
| secure_hash_message_digest_out1.tabular | -rw-r--r-- | 388 bytes |
| sff_converter_fasta.dat | -rw-r--r-- | 1.7 KB |
| sff_converter_fastq.dat | -rw-r--r-- | 3.3 KB |
| sff_converter_qual.dat | -rw-r--r-- | 5.0 KB |
| sff_converter_xml_1.dat | -rw-r--r-- | 566 bytes |
| sff_converter_xml_2.dat | -rw-r--r-- | 566 bytes |
| short_reads_trim_seq_out1.fasta | -rw-r--r-- | 2.0 KB |
| short_reads_trim_seq_out2.fasta | -rw-r--r-- | 981 bytes |
| shrimp_cs_test1.csfasta | -rw-r--r-- | 162.6 KB |
| shrimp_cs_test1.out | -rw-r--r-- | 139.4 KB |
| shrimp_phix_anc.fa | -rwxr-xr-x | 5.3 KB |
| shrimp_wrapper_test1.fastq | -rw-r--r-- | 1.4 KB |
| shrimp_wrapper_test1.out1 | -rw-r--r-- | 538 bytes |
| sift_variants.tab | -rw-r--r-- | 600 bytes |
| sift_variants_result.tab | -rw-r--r-- | 2.9 KB |
| smallwgaP.xls | -rw-r--r-- | 8.0 KB |
| snpFreqInput.txt | -rw-r--r-- | 299 bytes |
| snpFreqTestOut.txt | -rw-r--r-- | 880 bytes |
| solexa.fasta | -rw-r--r-- | 1.2 KB |
| solexa.qual | -rw-r--r-- | 21.1 KB |
| solexa.tabular | -rw-r--r-- | 1.5 KB |
| solexaLength.txt | -rw-r--r-- | 171 bytes |
| solexaScore.pdf | -rw-r--r-- | 20.0 KB |
| solexaScore.png | -rw-r--r-- | 5.3 KB |
| solexa_full_range_as_cssanger.fastqcssanger | -rw-r--r-- | 452 bytes |
| solexa_full_range_as_decimal_solexa.fastqsolexa | -rw-r--r-- | 702 bytes |
| solexa_full_range_as_illumina.fastqillumina | -rw-r--r-- | 450 bytes |
| solexa_full_range_as_sanger.fastqsanger | -rw-r--r-- | 450 bytes |
| solexa_full_range_original_solexa.fastqsolexa | -rw-r--r-- | 450 bytes |
| solexa_high_quality_hist.pdf | -rw-r--r-- | 4.0 KB |
| solid2fastq_out_1.fastq | -rw-r--r-- | 58.6 KB |
| solid2fastq_out_2.fastq | -rw-r--r-- | 57.8 KB |
| solid2fastq_out_3.fastq | -rw-r--r-- | 57.8 KB |
| sort_in1.bed | -rw-r--r-- | 5.4 KB |
| sort_out1.bed | -rw-r--r-- | 5.4 KB |
| sort_out2.bed | -rw-r--r-- | 5.4 KB |
| split_pair_reads_1.fastqsanger | -rw-r--r-- | 758 bytes |
| split_pair_reads_2.fastqsanger | -rw-r--r-- | 758 bytes |
| srma_in1.bam | -rw-r--r-- | 1.0 KB |
| srma_in2.fa | -rw-r--r-- | 14.6 MB |
| srma_in3.bam | -rw-r--r-- | 1.0 KB |
| srma_in3.sam | -rw-r--r-- | 2.2 KB |
| srma_out1.bam | -rw-r--r-- | 1009 bytes |
| srma_out2.bam | -rw-r--r-- | 1.6 KB |
| stacked_barplot.pdf | -rwxr-xr-x | 68.4 KB |
| subRates1.out | -rw-r--r-- | 882 bytes |
| subs.out | -rw-r--r-- | 37.7 KB |
| subtract-query-1.dat | -rw-r--r-- | 37 bytes |
| subtract-query-2.dat | -rw-r--r-- | 646 bytes |
| subtract-query-3.dat | -rw-r--r-- | 124 bytes |
| subtract-query-4.dat | -rw-r--r-- | 646 bytes |
| t2t_report.tabular | -rw-r--r-- | 331 bytes |
| t_test_result1.text | -rwxr-xr-x | 283 bytes |
| t_test_result2.text | -rwxr-xr-x | 293 bytes |
| t_test_result3.text | -rwxr-xr-x | 278 bytes |
| t_test_result4.text | -rwxr-xr-x | 288 bytes |
| t_test_result5.text | -rwxr-xr-x | 283 bytes |
| t_test_result6.text | -rwxr-xr-x | 293 bytes |
| table_addition_result.tabular | -rwxr-xr-x | 152 bytes |
| table_division_result.tabular | -rwxr-xr-x | 128 bytes |
| table_multiplication_result.tabular | -rwxr-xr-x | 171 bytes |
| table_subtraction_result.tabular | -rwxr-xr-x | 128 bytes |
| tabular_to_fasta_out1.fasta | -rw-r--r-- | 1.5 KB |
| taxonomy2gi-input.tabular | -rw-r--r-- | 30 bytes |
| taxonomy2gi-output.tabular | -rw-r--r-- | 654 bytes |
| taxonomyGI.tabular | -rw-r--r-- | 66 bytes |
| taxonomyGI.taxonomy | -rw-r--r-- | 787 bytes |
| tblastn_four_human_vs_rhodopsin.html | -rw-r--r-- | 19.2 KB |
| tblastn_four_human_vs_rhodopsin.tabular | -rw-r--r-- | 891 bytes |
| tblastn_four_human_vs_rhodopsin.xml | -rw-r--r-- | 37.7 KB |
| tblastn_four_human_vs_rhodopsin_ext.tabular | -rw-r--r-- | 5.5 KB |
| tblastn_four_human_vs_rhodopsin_parse_deflines.tabular | -rw-r--r-- | 891 bytes |
| test-go-ids | -rw-r--r-- | 11 bytes |
| test-go-ids2 | -rw-r--r-- | 13 bytes |
| test.small.vcf | -rw-r--r-- | 141.5 KB |
| test_annotated_dbsnp.vcf | -rw-r--r-- | 142.6 KB |
| test_annotated_hapmap.vcf | -rw-r--r-- | 142.1 KB |
| test_extract_discard_info_TV.vcf | -rw-r--r-- | 94.0 KB |
| test_extract_keep_info_TV.vcf | -rw-r--r-- | 54.4 KB |
| test_extract_pass_filter_quality_9_DP_2000_lt.vcf | -rw-r--r-- | 43.1 KB |
| test_extract_quality_90_ge.vcf | -rw-r--r-- | 45.2 KB |
| test_extract_region_80000_100000.vcf | -rw-r--r-- | 51.7 KB |
| test_filter_quality99.vcf | -rw-r--r-- | 140.9 KB |
| test_filter_quality_9_DP_2000_lt.vcf | -rw-r--r-- | 142.3 KB |
| test_filter_quality_9_NS_360_gt.vcf | -rw-r--r-- | 142.8 KB |
| tinywga.bed | -rw-r--r-- | 253 bytes |
| tinywga.bim | -rw-r--r-- | 700 bytes |
| tinywga.fam | -rw-r--r-- | 603 bytes |
| tinywga.map | -rw-r--r-- | 600 bytes |
| tinywga.ped | -rw-r--r-- | 4.5 KB |
| tinywga.ped.space_to_tab | -rw-r--r-- | 4.5 KB |
| tinywga.pphe | -rw-r--r-- | 1.1 KB |
| tophat_in1.fasta | -rw-r--r-- | 680 bytes |
| tophat_in2.fastqsanger | -rw-r--r-- | 17.3 KB |
| tophat_in3.fastqsanger | -rw-r--r-- | 17.3 KB |
| tophat_in4.fastqcssanger | -rw-r--r-- | 57.1 KB |
| tophat_in5.fasta | -rw-r--r-- | 249.0 KB |
| tophat_in6.fastqcssanger | -rw-r--r-- | 16.0 KB |
| tophat_in7.fastqcssanger | -rw-r--r-- | 16.0 KB |
| tophat_out1h.bam | -rw-r--r-- | 2.6 KB |
| tophat_out1j.bed | -rw-r--r-- | 196 bytes |
| tophat_out2h.bam | -rw-r--r-- | 4.7 KB |
| tophat_out2j.bed | -rw-r--r-- | 196 bytes |
| tophat_out3d.bed | -rw-r--r-- | 52 bytes |
| tophat_out3h.bam | -rw-r--r-- | 2.7 KB |
| tophat_out3i.bed | -rw-r--r-- | 54 bytes |
| tophat_out3j.bed | -rw-r--r-- | 196 bytes |
| tophat_out4h.bam | -rw-r--r-- | 4.8 KB |
| tophat_out4j.bed | -rw-r--r-- | 196 bytes |
| tophat_out5h.bam | -rw-r--r-- | 12.4 KB |
| tophat_out5j.bed | -rw-r--r-- | 451 bytes |
| tophat_out6d.bed | -rw-r--r-- | 52 bytes |
| tophat_out6h.bam | -rw-r--r-- | 12.6 KB |
| tophat_out6i.bed | -rw-r--r-- | 54 bytes |
| tophat_out6j.bed | -rw-r--r-- | 531 bytes |
| tophat_out7h.bam | -rw-r--r-- | 14.8 KB |
| tophat_out7j.bed | -rw-r--r-- | 213 bytes |
| tophat_out8d.bed | -rw-r--r-- | 52 bytes |
| tophat_out8h.bam | -rw-r--r-- | 14.6 KB |
| tophat_out8i.bed | -rw-r--r-- | 54 bytes |
| tophat_out8j.bed | -rw-r--r-- | 293 bytes |
| trimmer_a_f_c0_s1_e13_i62.dat | -rw-r--r-- | 73 bytes |
| trimmer_a_f_c2_s1_e2_i62.dat | -rw-r--r-- | 71 bytes |
| trimmer_tab_delimited.dat | -rw-r--r-- | 82 bytes |
| uniq_out.dat | -rw-r--r-- | 151 bytes |
| value_interpolate.bed | -rwxr-xr-x | 78.5 KB |
| velvet_test_long.fa | -rw-r--r-- | 248.9 KB |
| velvet_test_reads.fa | -rw-r--r-- | 8.5 MB |
| velvet_test_reference.fa | -rw-r--r-- | 99.3 KB |
| wc_gnu_out_1.tabular | -rw-r--r-- | 36 bytes |
| wc_gnu_out_2.tabular | -rw-r--r-- | 12 bytes |
| wrapping_as_illumina.fastqillumina | -rw-r--r-- | 963 bytes |
| wrapping_as_sanger.fastqsanger | -rw-r--r-- | 963 bytes |
| wrapping_as_sanger_decimal.fastqsanger | -rw-r--r-- | 1.7 KB |
| wrapping_as_solexa.fastqsolexa | -rw-r--r-- | 963 bytes |
| wrapping_original_sanger.fastqsanger | -rw-r--r-- | 975 bytes |
