https://github.com/broadinstitute/picard
- HEAD
- refs/heads/as_DSDEGP-2191_find_all_broken_bcls_before_dying
- refs/heads/as_fix_liftover_docs
- refs/heads/bcmaster
- refs/heads/bt_make_SamFileTester_accessible
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- refs/heads/ck_ExtractIlluminaBarcodes_WithCache
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- refs/heads/gg_GL-853_HaveVcfToAdpcHandleMultiSampleVcfs
- refs/heads/gg_UpdateTo_htsjdk_2.23.0
- refs/heads/ggjw_PO-40902_FixEIB
- refs/heads/gh-pages
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- refs/heads/lb_remove_ga4gh_argument
- refs/heads/lb_repro_no_r
- refs/heads/lb_test
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- refs/heads/lb_test_htsjdk_release_candidate
- refs/heads/lb_test_htsjdk_update
- refs/heads/ldg_MTvariantMetrics
- refs/heads/ldg_intervalToolsTypo
- refs/heads/lh_ROI_on_MD_set_size_hist
- refs/heads/lh_dup_set_size
- refs/heads/lh_duplicate_set_count
- refs/heads/lh_duplicate_set_index_tag
- refs/heads/lh_fingerprint
- refs/heads/lh_representative_read_tag_rebase_TEST
- refs/heads/lh_representative_read_tags2
- refs/heads/lh_roi_duplicate
- refs/heads/master
- refs/heads/mf_theoretical_sensitivity_improvements
- refs/heads/mg_collectrnaseqmetrics_make_ignore_sequence_optional
- refs/heads/mg_htsjdk_bump
- refs/heads/mg_longread_error_reporting
- refs/heads/mg_longread_error_reporting_dev
- refs/heads/mg_longread_error_reporting_dev_query
- refs/heads/mg_longread_error_reporting_iteration_indel_stratifiers
- refs/heads/mg_longread_error_reporting_iteration_indel_stratifiers_multiple_vcfs
- refs/heads/mg_longread_error_reporting_with_read_output
- refs/heads/ms_HaplotypeMap_bug_fix
- refs/heads/ms_collectsamerrormetrics_bugfix
- refs/heads/ms_flowcell_position
- refs/heads/ms_readnames
- refs/heads/nh_alt_contig_pattern
- refs/heads/nh_c_r_s_p_test
- refs/heads/nh_collect_sam_error_metrics_extension
- refs/heads/nh_collect_sam_error_metrics_no_vcf
- refs/heads/nh_eib_barcode_mismatch
- refs/heads/nh_make_vcf_optional
- refs/heads/nh_mark_duplicates_with_low_q_end
- refs/heads/phs_po-17291_indescriminate_periods
- refs/heads/sc_gl-1338_GTF_files_in_CollectRnaSeqMetrics
- refs/heads/sh_expose_bq_checkFP
- refs/heads/sl_crosscheckfingerprints_docs
- refs/heads/tl_respect_user_output_choice
- refs/heads/tl_sortvcf_dict_validation_stringency
- refs/heads/trivy-action
- refs/heads/ts_annotated
- refs/heads/ts_disjoint_intervals
- refs/heads/ts_dup_rate
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- refs/heads/ts_make_trimming_optional
- refs/heads/ts_md_rna_test
- refs/heads/ts_md_umi
- refs/heads/ts_no_mate_number
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- refs/heads/ts_rna_bam
- refs/heads/ts_skip_dict_check
- refs/heads/ts_stratify
- refs/heads/ts_update_rna
- refs/heads/ultima.flow.mods.squash
- refs/heads/vd_GTC_to_VCF
- refs/heads/vdauwera-docpatch-CollectSamErrorMetrics
- refs/heads/yf_add_ReconstructTriosCLPs
- refs/heads/yf_add_contig_not_found_error_to_reorderSam
- refs/heads/yf_add_mba_PG_record
- refs/heads/yf_allow_liftover_intervals_to_break_them
- refs/heads/yf_allow_multiple_dictionaries_in_crosscheck
- refs/heads/yf_consider_MQ0_reads_unmapped_for_MD
- refs/heads/yf_contaminator_from_array_vcf
- refs/heads/yf_detect_cancer
- refs/heads/yf_enable_requester_pays_project
- refs/heads/yf_estimate_coverage_dependence_on_flow
- refs/heads/yf_explore_picard_bug_1523
- refs/heads/yf_fix_MBA_string
- refs/heads/yf_fix_bug_in_MV
- refs/heads/yf_fix_collectwgsmetrics_test
- refs/heads/yf_fix_create_dictionary
- refs/heads/yf_fix_intermittent__STDOUT_failures
- refs/heads/yf_fix_short_overflow_in_MD
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- refs/heads/yf_optimize_memory_usage_during_crosscheck
- refs/heads/yf_pickBarbodes
- refs/heads/yf_remove_deprecated_usages
- refs/heads/yf_speed_up_nocall
- refs/tags/1.113
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- refs/tags/2.5.0-gradle
- bc_4.13
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Tip revision: 9cbdc59fee00983363808f975fbb2511aea4365a authored by Mark Fleharty on 18 November 2018, 20:22:21 UTC
Fixes off by one error in trimDistribution that causes CollectHsMetrics to crash on edge case (#1248)
Fixes off by one error in trimDistribution that causes CollectHsMetrics to crash on edge case (#1248)
Tip revision: 9cbdc59
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| .dockerignore | -rw-r--r-- | 179 bytes |
| .gitignore | -rw-r--r-- | 190 bytes |
| .pullapprove.yml | -rw-r--r-- | 284 bytes |
| .travis.yml | -rw-r--r-- | 601 bytes |
| Dockerfile | -rw-r--r-- | 947 bytes |
| LICENSE.txt | -rw-r--r-- | 1.0 KB |
| README.md | -rw-r--r-- | 6.7 KB |
| build.gradle | -rw-r--r-- | 14.2 KB |
| build.xml | -rw-r--r-- | 1.1 KB |
| build_push_docker.sh | -rwxr-xr-x | 850 bytes |
| gradlew | -rwxr-xr-x | 4.9 KB |
| settings.gradle | -rw-r--r-- | 56 bytes |
