https://github.com/christophertbrown/bioscripts
Tip revision: c8c657b7895681b539bdfd8c78f786f9b99ab230 authored by Chris Brown on 31 October 2019, 23:22:39 UTC
fixed bug with extra long bit scores
fixed bug with extra long bit scores
Tip revision: c8c657b
| File | Mode | Size |
|---|---|---|
| 16SfromHMM.py | -rwxr-xr-x | 12.8 KB |
| 23SfromHMM.py | -rwxr-xr-x | 12.7 KB |
| __init__.py | -rw-r--r-- | 0 bytes |
| besthits.py | -rwxr-xr-x | 10.4 KB |
| calculate_coverage.py | -rwxr-xr-x | 3.0 KB |
| cluster_ani.py | -rwxr-xr-x | 11.1 KB |
| compare_aligned.py | -rwxr-xr-x | 9.2 KB |
| concat_align.py | -rwxr-xr-x | 1.1 KB |
| crossmap.py | -rwxr-xr-x | 4.8 KB |
| entrez_genome.sh | -rwxr-xr-x | 173 bytes |
| fasta.py | -rwxr-xr-x | 1.6 KB |
| fasta_length.py | -rwxr-xr-x | 1.0 KB |
| fasta_region.py | -rwxr-xr-x | 1.4 KB |
| fasta_stats.py | -rwxr-xr-x | 160 bytes |
| fasta_stats.sh | -rwxr-xr-x | 306 bytes |
| fastq2fasta.py | -rwxr-xr-x | 663 bytes |
| fastq_merge.py | -rwxr-xr-x | 865 bytes |
| fastq_split.py | -rwxr-xr-x | 812 bytes |
| filter_fastq_sam.py | -rwxr-xr-x | 3.4 KB |
| fix_fasta.py | -rwxr-xr-x | 894 bytes |
| genome_abundance.py | -rwxr-xr-x | 6.8 KB |
| genome_coverage.py | -rwxr-xr-x | 3.5 KB |
| genome_variation.py | -rwxr-xr-x | 24.5 KB |
| lookup-word.py | -rwxr-xr-x | 812 bytes |
| lookup.py | -rwxr-xr-x | 683 bytes |
| mapped.py | -rwxr-xr-x | 9.4 KB |
| n50.py | -rwxr-xr-x | 1.8 KB |
| name2faa.py | -rwxr-xr-x | 1.1 KB |
| name2fasta.py | -rwxr-xr-x | 1.1 KB |
| ncbi_download.py | -rwxr-xr-x | 9.2 KB |
| neto.py | -rwxr-xr-x | 21.2 KB |
| nr_fasta.py | -rwxr-xr-x | 1.8 KB |
| numblast-pident.py | -rwxr-xr-x | 1.6 KB |
| numblast.py | -rwxr-xr-x | 1.9 KB |
| orthologer.py | -rwxr-xr-x | 8.7 KB |
| orthologer_summary.py | -rwxr-xr-x | 2.9 KB |
| parallel.py | -rwxr-xr-x | 720 bytes |
| rRNA_copies.py | -rwxr-xr-x | 5.3 KB |
| rRNA_insertions.py | -rwxr-xr-x | 21.8 KB |
| rRNA_insertions_gff.py | -rwxr-xr-x | 8.6 KB |
| rax.py | -rwxr-xr-x | 10.1 KB |
| rc.py | -rwxr-xr-x | 1.2 KB |
| rec_best_blast.py | -rwxr-xr-x | 968 bytes |
| rp16.py | -rwxr-xr-x | 8.7 KB |
| rp16_retreive.sh | -rwxr-xr-x | 447 bytes |
| sam2fastq.py | -rwxr-xr-x | 2.9 KB |
| search.py | -rwxr-xr-x | 8.7 KB |
| shuffle_genome.py | -rwxr-xr-x | 3.3 KB |
| sixframe.py | -rwxr-xr-x | 1.4 KB |
| stats.py | -rwxr-xr-x | 912 bytes |
| stockholm2fa.py | -rwxr-xr-x | 957 bytes |
| stockholm2oneline.py | -rwxr-xr-x | 1.3 KB |
| strip_align.py | -rwxr-xr-x | 2.4 KB |
| strip_align_inserts.py | -rwxr-xr-x | 712 bytes |
| strip_masked.py | -rwxr-xr-x | 2.2 KB |
| subset_reads.py | -rwxr-xr-x | 1.5 KB |
| subset_sam.py | -rwxr-xr-x | 2.5 KB |
| transform.py | -rwxr-xr-x | 6.8 KB |
| unmapped.py | -rwxr-xr-x | 1.1 KB |
