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https://github.com/eastmallingresearch/crosslink
06 April 2024, 03:06:24 UTC
History
Tip revision: 5c9ec6b6b27a18ad1687c51f95dc4a2ef894aa1a authored by Robert Vickerstaff on 19 January 2018, 14:40:21 UTC
fixed link to QTL pipelines
Tip revision: 5c9ec6b
File Mode Size
000_main_pipeline.sh -rw-r--r-- 1.9 KB
add_labels_to_fig.sh -rwxr-xr-x 721 bytes
boxplot_mapscore.R -rwxr-xr-x 2.4 KB
combine_mstmap_maps.py -rwxr-xr-x 985 bytes
compare_progs.sh -rwxr-xr-x 1.9 KB
compare_progs_erate.sh -rwxr-xr-x 2.1 KB
compare_progs_erate_old.sh -rw-r--r-- 2.4 KB
compare_progs_mdensity.sh -rwxr-xr-x 2.1 KB
compare_progs_mdensity_old.sh -rw-r--r-- 2.7 KB
conv2joinmap_test_data_erate.sh -rwxr-xr-x 1.5 KB
conv2joinmap_test_data_mdensity.sh -rwxr-xr-x 1.6 KB
convert2lepmap.py -rwxr-xr-x 2.5 KB
convert2mstmap.py -rwxr-xr-x 3.6 KB
convert2mstmap_erate.sh -rwxr-xr-x 1.5 KB
convert2mstmap_mdensity.sh -rwxr-xr-x 1.5 KB
convert2onemap.py -rwxr-xr-x 1.5 KB
corr_anova_score.R -rwxr-xr-x 1.7 KB
corr_anova_score_erate.R -rwxr-xr-x 1.6 KB
count_matpat_linkages.py -rwxr-xr-x 1.9 KB
create_test_data.sh -rwxr-xr-x 3.2 KB
create_test_data_erate.sh -rwxr-xr-x 3.3 KB
create_test_data_mdensity.sh -rwxr-xr-x 3.3 KB
del_old_mstmap_runs.sh -rwxr-xr-x 332 bytes
extract_maxvmem.py -rwxr-xr-x 501 bytes
get_maxvmem_erate.sh -rwxr-xr-x 1.2 KB
get_maxvmem_mdensity.sh -rwxr-xr-x 1.5 KB
grid_run -rw-r--r-- 3.8 KB
lepmap2map.py -rwxr-xr-x 1.3 KB
make_figs_both_3way_bioinf_facetgrid.R -rwxr-xr-x 5.6 KB
make_figs_compare.R -rwxr-xr-x 2.2 KB
make_figs_compare_poster.R -rwxr-xr-x 2.4 KB
make_figs_count_fixed.R -rwxr-xr-x 1.7 KB
make_figs_erate_3way.R -rwxr-xr-x 6.9 KB
make_figs_erate_3way_bioinf.R -rwxr-xr-x 7.3 KB
make_figs_erate_3way_bioinf_facet.R -rwxr-xr-x 3.9 KB
make_figs_erate_3way_bioinf_vert.R -rwxr-xr-x 6.4 KB
make_figs_erate_4way.R -rwxr-xr-x 6.6 KB
make_figs_mdensity.R -rwxr-xr-x 4.0 KB
make_figs_mdensity_3way.R -rwxr-xr-x 6.7 KB
make_figs_mdensity_3way_bioinf.R -rwxr-xr-x 7.2 KB
make_figs_mdensity_3way_bioinf_vert.R -rwxr-xr-x 7.7 KB
make_figs_mdensity_4way.R -rwxr-xr-x 6.2 KB
make_figs_mdensity_maxvmem.R -rwxr-xr-x 3.1 KB
make_figs_xlg_hkxhks.R -rwxr-xr-x 1.5 KB
make_table_erate_3way.R -rw-r--r-- 5.2 KB
montage_cmd.sh -rwxr-xr-x 355 bytes
montage_cmd2.sh -rwxr-xr-x 691 bytes
recalc_mapping_accuracy_erate.sh -rwxr-xr-x 1.6 KB
recalc_mapping_accuracy_mdensity.sh -rwxr-xr-x 1.6 KB
run_crosslink.sh -rwxr-xr-x 952 bytes
run_crosslink_inner.sh -rwxr-xr-x 5.1 KB
run_lepmap.sh -rwxr-xr-x 942 bytes
run_lepmap_inner.sh -rwxr-xr-x 633 bytes
run_mstmap.sh -rwxr-xr-x 1005 bytes
run_mstmap_inner.sh -rwxr-xr-x 226 bytes
run_onemap.sh -rwxr-xr-x 917 bytes
run_onemap_inner.R -rwxr-xr-x 782 bytes
run_onemap_inner.sh -rwxr-xr-x 177 bytes
run_tmap.sh -rwxr-xr-x 913 bytes
run_tmap_inner.sh -rwxr-xr-x 355 bytes
screen_cap_joinmap.sh -rwxr-xr-x 232 bytes
transpose_delim.py -rwxr-xr-x 276 bytes
transpose_tsv.py -rwxr-xr-x 247 bytes
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