https://github.com/eastmallingresearch/crosslink
Tip revision: 5c9ec6b6b27a18ad1687c51f95dc4a2ef894aa1a authored by Robert Vickerstaff on 19 January 2018, 14:40:21 UTC
fixed link to QTL pipelines
fixed link to QTL pipelines
Tip revision: 5c9ec6b
| File | Mode | Size |
|---|---|---|
| break_linkage_group.py | -rwxr-xr-x | 633 bytes |
| calc_crosslg_accuracy.py | -rwxr-xr-x | 1.0 KB |
| calc_crosslg_accuracy2.py | -rwxr-xr-x | 1.0 KB |
| calc_grouping_accuracy.py | -rwxr-xr-x | 2.1 KB |
| calc_hk_accuracy.py | -rwxr-xr-x | 1.1 KB |
| calc_imputation_accuracy.py | -rwxr-xr-x | 1.5 KB |
| calc_mapping_accuracy.sh | -rwxr-xr-x | 1.0 KB |
| calc_mapping_accuracy2.sh | -rwxr-xr-x | 804 bytes |
| calc_phasing_accuracy.py | -rwxr-xr-x | 2.9 KB |
| calc_typeerr_accuracy.py | -rwxr-xr-x | 1.0 KB |
| check_imputing.py | -rwxr-xr-x | 778 bytes |
| check_map_order.py | -rwxr-xr-x | 4.2 KB |
| cl_adjustlgs.sh | -rwxr-xr-x | 913 bytes |
| cl_adjustlgs2.sh | -rwxr-xr-x | 1.3 KB |
| cl_adjustlgs3.py | -rwxr-xr-x | 4.9 KB |
| cl_break.sh | -rwxr-xr-x | 1.9 KB |
| cl_detect_crosslg.sh | -rwxr-xr-x | 1.3 KB |
| cl_detect_crosslg_inner.sh | -rwxr-xr-x | 1.6 KB |
| cl_extract.sh | -rwxr-xr-x | 591 bytes |
| cl_findredun.sh | -rwxr-xr-x | 391 bytes |
| cl_fixtypes.sh | -rwxr-xr-x | 1.0 KB |
| cl_group.sh | -rwxr-xr-x | 500 bytes |
| cl_hkimpute.sh | -rwxr-xr-x | 952 bytes |
| cl_knnimpute.sh | -rwxr-xr-x | 656 bytes |
| cl_loc2joinmap.sh | -rwxr-xr-x | 786 bytes |
| cl_map2csv.sh | -rwxr-xr-x | 583 bytes |
| cl_map2joinmap.sh | -rwxr-xr-x | 587 bytes |
| cl_mappos.sh | -rwxr-xr-x | 418 bytes |
| cl_match2ref.sh | -rwxr-xr-x | 705 bytes |
| cl_merge.sh | -rwxr-xr-x | 348 bytes |
| cl_merge_inner.sh | -rwxr-xr-x | 1.7 KB |
| cl_modifymarkers.sh | -rwxr-xr-x | 379 bytes |
| cl_order_hkimpute.sh | -rwxr-xr-x | 1.1 KB |
| cl_order_hkimpute_inner.sh | -rwxr-xr-x | 1.4 KB |
| cl_phase.sh | -rwxr-xr-x | 345 bytes |
| cl_phase_inner.sh | -rwxr-xr-x | 560 bytes |
| cl_ref.sh | -rwxr-xr-x | 2.8 KB |
| cl_refine_order.sh | -rwxr-xr-x | 1.1 KB |
| cl_reinsert_loc.sh | -rwxr-xr-x | 501 bytes |
| cl_reinsert_loc_inner.sh | -rwxr-xr-x | 1.2 KB |
| cl_reinsert_map.sh | -rwxr-xr-x | 462 bytes |
| cl_removemarkers.sh | -rwxr-xr-x | 514 bytes |
| cl_subgroup.sh | -rwxr-xr-x | 2.2 KB |
| combine_matpat_maps.py | -rwxr-xr-x | 3.1 KB |
| compare_map_order.py | -rwxr-xr-x | 2.0 KB |
| compare_maps.py | -rwxr-xr-x | 2.3 KB |
| compare_multimaps.py | -rwxr-xr-x | 1.6 KB |
| compare_multimaps2.py | -rwxr-xr-x | 1.5 KB |
| create_type_errors.py | -rwxr-xr-x | 4.2 KB |
| find_markers.py | -rwxr-xr-x | 903 bytes |
| make_combined_map.py | -rwxr-xr-x | 1.5 KB |
| map2csv.sh | -rwxr-xr-x | 594 bytes |
| mapping_accuracy.py | -rwxr-xr-x | 2.8 KB |
| mapping_accuracy_1lg.py | -rwxr-xr-x | 1.8 KB |
| mapping_funcs.py | -rwxr-xr-x | 3.0 KB |
| mapping_funcs2.py | -rw-r--r-- | 1.9 KB |
| match_and_reorient.py | -rwxr-xr-x | 2.4 KB |
| match_lgs.py | -rwxr-xr-x | 2.7 KB |
| modify_markers.py | -rwxr-xr-x | 1.2 KB |
| probe2snp.py | -rwxr-xr-x | 602 bytes |
| probe2snp.sh | -rwxr-xr-x | 719 bytes |
| reinsert_redundant.py | -rwxr-xr-x | 1.6 KB |
| reinsert_redundant_map.py | -rwxr-xr-x | 1.4 KB |
| reverse_marker_posn.py | -rwxr-xr-x | 521 bytes |
| split_group_file.py | -rwxr-xr-x | 955 bytes |
| test_create_map_sample_map.sh | -rwxr-xr-x | 1.5 KB |
| test_ga.sh | -rwxr-xr-x | 3.0 KB |
| test_ga_gibbs.sh | -rwxr-xr-x | 6.2 KB |
| test_ga_singlerun.sh | -rwxr-xr-x | 2.0 KB |
| test_gibbs_manual.sh | -rwxr-xr-x | 2.1 KB |
| test_gibbs_multiplerun.sh | -rwxr-xr-x | 2.4 KB |
| test_gibbs_singlerun.sh | -rwxr-xr-x | 2.0 KB |
| test_gibbs_smallmap.sh | -rwxr-xr-x | 2.4 KB |
| test_gibbs_smallmap2.sh | -rwxr-xr-x | 2.3 KB |
| test_group.sh | -rwxr-xr-x | 1.5 KB |
| test_grouping.sh | -rwxr-xr-x | 2.3 KB |
| test_hk.sh | -rwxr-xr-x | 4.5 KB |
| test_hk_ignorecxr.sh | -rwxr-xr-x | 4.5 KB |
| test_hk_twogroups.sh | -rwxr-xr-x | 4.5 KB |
| test_hk_usecxr.sh | -rwxr-xr-x | 4.8 KB |
| test_knn.sh | -rwxr-xr-x | 2.3 KB |
| test_phase.sh | -rwxr-xr-x | 1.8 KB |
| test_redundancy.sh | -rwxr-xr-x | 2.1 KB |
| test_refactored.sh | -rwxr-xr-x | 3.6 KB |
| test_rgxha.sh | -rwxr-xr-x | 3.3 KB |
| test_rgxha2.sh | -rwxr-xr-x | 8.2 KB |
| test_rgxha_redundancy.sh | -rwxr-xr-x | 13.2 KB |
| test_type_fixing.sh | -rwxr-xr-x | 4.0 KB |
| test_type_fixing2.sh | -rwxr-xr-x | 4.0 KB |
| test_viewer.sh | -rwxr-xr-x | 3.8 KB |
| testsdl_make.sh | -rwxr-xr-x | 630 bytes |
| total_map_length.py | -rwxr-xr-x | 563 bytes |
| viewer_make.sh | -rwxr-xr-x | 753 bytes |
