| ccd60dd | J Wokaty | 24 October 2023, 15:03:44 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_18 branch | 24 October 2023, 15:03:44 UTC |
| 9757581 | Alexey Sergushichev | 23 October 2023, 16:15:32 UTC | Fix manual pdf build | 23 October 2023, 16:15:32 UTC |
| 6d06d2c | Alexey Sergushichev | 19 October 2023, 16:14:55 UTC | remove outdated badges | 19 October 2023, 16:14:55 UTC |
| 4f8848b | Alexey Sergushichev | 19 October 2023, 16:13:10 UTC | remove bioccheck & codecov | 19 October 2023, 16:13:10 UTC |
| 73fa89e | Alexey Sergushichev | 18 October 2023, 21:55:09 UTC | delete static release.js Merge-request: PHANTASUS-MR-37 Merged-by: Alexey Sergushichev <alserg@itmo.ru> | 18 October 2023, 21:55:09 UTC |
| b87474e | Alexey Sergushichev | 20 September 2023, 19:20:22 UTC | fix wrong order of cells after TMM and voom | 20 September 2023, 19:20:22 UTC |
| 3e0a250 | Alexey Sergushichev | 05 September 2023, 17:35:54 UTC | fix dataset problem in JS | 05 September 2023, 17:35:54 UTC |
| 882d3b8 | Alexey Sergushichev | 29 August 2023, 20:12:32 UTC | bump version to 1.21.4 | 29 August 2023, 20:12:32 UTC |
| 4bff9c7 | Alexey Sergushichev | 16 August 2023, 20:20:42 UTC | update js - fix gct parsing | 16 August 2023, 20:20:42 UTC |
| f87ef2d | Alexey Sergushichev | 02 August 2023, 03:57:04 UTC | Merge PHANTASUS-MR-35: new_normalizations | 02 August 2023, 03:57:04 UTC |
| b6dac95 | Maksim Kleverov | 02 August 2023, 00:57:28 UTC | fix limma tests | 02 August 2023, 00:57:28 UTC |
| b3a8e0a | Alexey Sergushichev | 01 August 2023, 22:09:34 UTC | fixup! more version fixes | 01 August 2023, 22:09:34 UTC |
| 3b86c80 | Alexey Sergushichev | 01 August 2023, 21:54:51 UTC | Merge branch 'master' into new_normalizations | 01 August 2023, 21:54:51 UTC |
| 385c1aa | Alexey Sergushichev | 01 August 2023, 21:53:55 UTC | fixup! versions corrected | 01 August 2023, 21:53:55 UTC |
| 106984a | Alexey Sergushichev | 01 August 2023, 21:50:56 UTC | NEWS update | 01 August 2023, 21:50:56 UTC |
| 407fb2e | Alexey Sergushichev | 01 August 2023, 21:50:45 UTC | JS update | 01 August 2023, 21:50:45 UTC |
| 18b4fc4 | Maksim Kleverov | 01 August 2023, 15:33:41 UTC | remove test print | 01 August 2023, 15:33:41 UTC |
| 496fb3d | Maksim Kleverov | 31 July 2023, 21:15:54 UTC | works with strange factor names and levels | 31 July 2023, 21:15:54 UTC |
| b8cbb40 | Maksim Kleverov | 28 July 2023, 18:50:33 UTC | document_update | 28 July 2023, 18:50:33 UTC |
| db5fb84 | Maksim Kleverov | 28 July 2023, 18:24:51 UTC | add packages | 28 July 2023, 18:24:51 UTC |
| b60858a | Maksim Kleverov | 26 July 2023, 16:13:57 UTC | optional filter and cpm for voom and tmm | 26 July 2023, 16:13:57 UTC |
| 11478e1 | Maksim Kleverov | 25 July 2023, 19:05:14 UTC | bugfixes in hdf5 reading and meta generation | 25 July 2023, 19:05:14 UTC |
| 7f2eedc | Maksim Kleverov | 07 July 2023, 20:48:32 UTC | add advanced design to limma | 07 July 2023, 20:48:32 UTC |
| b7efd45 | Maksim Kleverov | 22 June 2023, 19:15:40 UTC | archs4_v2.2 support, changed meta.txt format Co-authored-by: Maksim Kleverov <klevermx@gmail.com> Merge-request: PHANTASUS-MR-32 Merged-by: Alexey Sergushichev <alserg@itmo.ru> | 22 June 2023, 19:15:40 UTC |
| c9eeb0f | Maksim Kleverov | 17 May 2023, 18:10:13 UTC | add voom and deseq with design | 17 May 2023, 18:10:13 UTC |
| f0f0575 | Alexey Sergushichev | 26 April 2023, 15:59:19 UTC | Merge remote-tracking branch 'space/master' | 26 April 2023, 15:59:19 UTC |
| cfcacbe | Alexey Sergushichev | 26 April 2023, 15:57:20 UTC | version fix | 26 April 2023, 15:57:20 UTC |
| 5524cc3 | J Wokaty | 25 April 2023, 15:00:13 UTC | bump x.y.z version to odd y following creation of RELEASE_3_17 branch | 25 April 2023, 15:00:13 UTC |
| d248b1e | J Wokaty | 25 April 2023, 15:00:13 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_17 branch | 25 April 2023, 15:00:13 UTC |
| e90ae31 | Maksim Kleverov | 19 April 2023, 07:16:58 UTC | fix brief loading | 19 April 2023, 07:16:58 UTC |
| 6409ba3 | Maksim Kleverov | 19 April 2023, 06:58:33 UTC | voom normalization first version | 19 April 2023, 06:58:33 UTC |
| bbadc3c | Maksim Kleverov | 13 March 2023, 19:05:53 UTC | add tmm normalization | 13 March 2023, 19:05:53 UTC |
| 489aa7a | Alexey Sergushichev | 21 December 2022, 22:25:09 UTC | citation | 21 December 2022, 22:25:09 UTC |
| 451ce06 | Alexey Sergushichev | 13 December 2022, 12:07:43 UTC | ShinyGAM -> ShinyGATOM | 13 December 2022, 12:21:04 UTC |
| a344bd0 | Alexey Sergushichev | 03 November 2022, 18:51:22 UTC | version fix | 03 November 2022, 18:51:22 UTC |
| ad8fdc4 | Alexey Sergushichev | 28 October 2022, 23:35:30 UTC | increased nginx buffer sizes | 01 November 2022, 20:38:36 UTC |
| 8ba08db | J Wokaty | 01 November 2022, 15:17:23 UTC | bump x.y.z version to odd y following creation of RELEASE_3_16 branch | 01 November 2022, 15:17:23 UTC |
| bd60368 | J Wokaty | 01 November 2022, 15:17:23 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_16 branch | 01 November 2022, 15:17:23 UTC |
| 7b78680 | Alexey Sergushichev | 27 October 2022, 01:03:03 UTC | js update + version bump | 27 October 2022, 01:03:03 UTC |
| 2f82e1f | Alexey Sergushichev | 27 October 2022, 00:53:41 UTC | keep all annotations if no genes detected, fix #155 | 27 October 2022, 00:53:41 UTC |
| 7286247 | Alexey Sergushichev | 06 September 2022, 18:44:17 UTC | update js | 06 September 2022, 18:44:17 UTC |
| b9a3c55 | clever | 26 August 2022, 12:22:49 UTC | Refactor h5 processing in order to avoid file locks. Co-authored-by: Alexey Sergushichev <alserg@itmo.ru> Merge-request: PHANTASUS-MR-28 Merged-by: Maksim Kleverov <klevermx@gmail.com> | 26 August 2022, 12:22:49 UTC |
| 5f48373 | Alexey Sergushichev | 14 July 2022, 16:02:58 UTC | fix tests | 14 July 2022, 16:02:58 UTC |
| bb4dbde | Alexey Sergushichev | 14 July 2022, 15:37:14 UTC | fix versions | 14 July 2022, 15:37:14 UTC |
| dcf8e37 | Alexey Sergushichev | 14 July 2022, 14:47:49 UTC | changed logic for supported datasets, fix PHANTASUS-T-53 | 14 July 2022, 14:47:49 UTC |
| 5dbc7ef | Alexey Sergushichev | 14 June 2022, 18:30:35 UTC | Longer timeout for "Waiting..." dialog | 14 June 2022, 18:30:35 UTC |
| 80dee83 | clevermx | 14 June 2022, 15:04:25 UTC | fix usage of lfcshrink keep stat column and add explicit shrink type | 14 June 2022, 15:04:25 UTC |
| 1708586 | clevermx | 25 May 2022, 11:01:24 UTC | Firefox installation without snapd for JB space tests. Merge-request: PHANTASUS-MR-26 Merged-by: Maksim Kleverov <klevermx@gmail.com> | 25 May 2022, 11:01:24 UTC |
| 0432fd8 | Alexey Sergushichev | 05 May 2022, 15:06:59 UTC | sync versions | 05 May 2022, 15:06:59 UTC |
| f333522 | Nitesh Turaga | 26 April 2022, 15:48:03 UTC | bump x.y.z version to odd y following creation of RELEASE_3_15 branch | 26 April 2022, 15:48:03 UTC |
| fbf8dff | Nitesh Turaga | 26 April 2022, 15:48:03 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_15 branch | 26 April 2022, 15:48:03 UTC |
| dcba3f2 | Alexey Sergushichev | 11 April 2022, 15:32:32 UTC | version bump | 11 April 2022, 15:32:32 UTC |
| ff6311c | clevermx | 11 April 2022, 10:35:45 UTC | fix paths in testdata's meta.rda and test for them | 11 April 2022, 15:31:26 UTC |
| c55c945 | clevermx | 07 April 2022, 15:58:52 UTC | add relative paths in meta.rda | 11 April 2022, 15:31:26 UTC |
| 5dbb074 | Alexey Sergushichev | 06 April 2022, 11:05:54 UTC | fix for apache permission error on old dockerd | 06 April 2022, 11:05:54 UTC |
| 951c45f | Alexey Sergushichev | 30 March 2022, 09:17:37 UTC | proper version bump | 30 March 2022, 09:17:37 UTC |
| 6df854b | Alexey Sergushichev | 30 March 2022, 09:08:06 UTC | Version bump | 30 March 2022, 09:08:06 UTC |
| 934f36c | clevermx | 29 March 2022, 17:51:51 UTC | remove sub applied to paths | 29 March 2022, 17:51:51 UTC |
| 0a79894 | clevermx | 17 February 2022, 16:30:23 UTC | fix double use of /meta/genes for zoo counts | 17 February 2022, 16:30:23 UTC |
| 373c171 | Alexey Sergushichev | 15 February 2022, 12:10:33 UTC | fix version in js | 15 February 2022, 12:10:33 UTC |
| b712fdd | clevermx | 10 February 2022, 12:15:20 UTC | fix id's for zoo | 10 February 2022, 12:15:20 UTC |
| b83c7d4 | Alexey Sergushichev | 09 February 2022, 08:58:06 UTC | version bump | 09 February 2022, 08:58:06 UTC |
| 66357a4 | clevermx | 18 January 2022, 11:09:39 UTC | Modify counts processing in order to support additional collections (not only ARCHs4). Add meta-files generation for new counts processing. Add support for 8+ versions of ARCHs4. Co-authored-by: Alexey Sergushichev <alserg@itmo.ru> Merge-request: PHANTASUS-MR-21 Merged-by: Maksim Kleverov <klevermx@gmail.com> | 18 January 2022, 11:09:39 UTC |
| d230978 | Alexey Sergushichev | 30 November 2021, 13:04:04 UTC | Fix PHANTASUS-T-48 | 30 November 2021, 13:04:04 UTC |
| 5bcaa19 | Alexey Sergushichev | 13 November 2021, 18:46:20 UTC | bump version in js | 13 November 2021, 18:46:20 UTC |
| a83f5d4 | Alexey Sergushichev | 13 November 2021, 18:43:28 UTC | version bump | 13 November 2021, 18:43:28 UTC |
| f60223b | Alexey Sergushichev | 04 November 2021, 12:25:10 UTC | check correctness of GSE ID before download | 04 November 2021, 12:25:10 UTC |
| e88df20 | Alexey Sergushichev | 04 November 2021, 12:24:44 UTC | workaround for seandavi/GEOquery #120 | 04 November 2021, 12:24:44 UTC |
| 8c06bbe | Alexey Sergushichev | 04 November 2021, 10:17:26 UTC | fix load of GPL soft files | 04 November 2021, 10:17:26 UTC |
| 669840a | Alexey Sergushichev | 02 November 2021, 18:02:25 UTC | space.kts fixes | 02 November 2021, 18:02:25 UTC |
| 11b7294 | Alexey Sergushichev | 02 November 2021, 18:01:18 UTC | update js | 02 November 2021, 18:01:18 UTC |
| aa2dee3 | Alexey Sergushichev | 02 November 2021, 17:30:47 UTC | fix some test warnings | 02 November 2021, 17:30:47 UTC |
| 9ca07de | Alexey Sergushichev | 02 November 2021, 17:30:24 UTC | testing correctness of versions in static files | 02 November 2021, 17:30:24 UTC |
| bc79a9b | Alexey Sergushichev | 01 November 2021, 18:05:43 UTC | version bump | 01 November 2021, 18:05:43 UTC |
| 75da639 | Alexey Sergushichev | 01 November 2021, 18:04:03 UTC | Merge branch 'space_jobs' | 01 November 2021, 18:04:03 UTC |
| 9ce860a | Alexey Sergushichev | 01 November 2021, 17:47:58 UTC | Merge branch 'master' of git.bioconductor.org:packages/phantasus | 01 November 2021, 17:47:58 UTC |
| dfd4b41 | Alexey Sergushichev | 01 November 2021, 16:42:57 UTC | update js | 01 November 2021, 16:42:57 UTC |
| b02f634 | Alexey Sergushichev | 01 November 2021, 16:42:37 UTC | fix commit id generation for update_js.sh | 01 November 2021, 16:42:37 UTC |
| 9ba9b97 | Nitesh Turaga | 26 October 2021, 16:42:56 UTC | bump x.y.z version to odd y following creation of RELEASE_3_14 branch | 26 October 2021, 16:42:56 UTC |
| 26a4f40 | Nitesh Turaga | 26 October 2021, 16:42:56 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_14 branch | 26 October 2021, 16:42:56 UTC |
| 294a0fd | Alexey Sergushichev | 26 October 2021, 14:09:13 UTC | docker entrypoint catches interrupts | 26 October 2021, 14:09:13 UTC |
| 7b6fe45 | clevermx | 25 October 2021, 17:25:47 UTC | update preloaded session doc | 25 October 2021, 17:25:47 UTC |
| 86dd632 | clevermx | 25 October 2021, 17:10:17 UTC | add whole example into dontrun | 25 October 2021, 17:10:17 UTC |
| 19e41bf | clevermx | 25 October 2021, 16:44:38 UTC | Merge branch 'space_jobs' of ssh://git.jetbrains.space/ctlab/phantasus/phantasus into space_jobs | 25 October 2021, 16:44:38 UTC |
| 8aa72dd | clevermx | 25 October 2021, 16:39:15 UTC | Delete symlinks to logs | 25 October 2021, 16:39:15 UTC |
| 9093256 | Maksim Kleverov | 21 October 2021, 12:33:39 UTC | change apt to apt-get | 21 October 2021, 12:33:39 UTC |
| d8a33b0 | Maksim Kleverov | 21 October 2021, 11:50:42 UTC | just print coverage, without sending | 21 October 2021, 11:50:42 UTC |
| 56686fa | Maksim Kleverov | 20 October 2021, 13:07:58 UTC | -y to firefox | 20 October 2021, 13:07:58 UTC |
| c583de0 | Maksim Kleverov | 20 October 2021, 12:51:13 UTC | add firefox instalation -_- | 20 October 2021, 12:51:13 UTC |
| 8cd8f84 | Maksim Kleverov | 19 October 2021, 18:49:48 UTC | add -y to npm instalation | 19 October 2021, 18:49:48 UTC |
| b0509a0 | Maksim Kleverov | 19 October 2021, 18:32:17 UTC | run tests of js and R in parallel | 19 October 2021, 18:32:17 UTC |
| 2acb8fa | Maksim Kleverov | 19 October 2021, 18:22:49 UTC | install bioccheck | 19 October 2021, 18:22:49 UTC |
| 0689398 | clevermx | 19 October 2021, 18:16:53 UTC | add firefox as js testing browser and other small fixes for tests | 19 October 2021, 18:16:53 UTC |
| 8bab52f | clevermx | 19 October 2021, 09:18:05 UTC | Merge branch 'space_jobs' of ssh://git.jetbrains.space/ctlab/phantasus/phantasus into space_jobs | 19 October 2021, 09:18:05 UTC |
| 1f6ce22 | clevermx | 19 October 2021, 09:14:04 UTC | fixes pass tests: fix loadGEO test with corresponding to new layout add otherOptions of convertByAnnotationDB in documentation | 19 October 2021, 09:14:04 UTC |
| 426d053 | Maksim Kleverov | 18 October 2021, 16:25:07 UTC | add docker build | 18 October 2021, 16:25:07 UTC |
| 38879f1 | Maksim Kleverov | 18 October 2021, 15:15:53 UTC | remove js test from R check | 18 October 2021, 15:15:53 UTC |
| a4307ee | Maksim Kleverov | 18 October 2021, 15:03:47 UTC | add JS instalation | 18 October 2021, 15:03:47 UTC |
| 693adfa | Maksim Kleverov | 18 October 2021, 09:35:58 UTC | test conteiner env | 18 October 2021, 09:35:58 UTC |
| 7402ec5 | Maksim Kleverov | 18 October 2021, 08:54:57 UTC | fix path to shared file | 18 October 2021, 08:54:57 UTC |
