d5653f8 | prashantpandey | 18 December 2020, 05:04:37 UTC | Handling counter expansion for remainder 0. | 18 December 2020, 05:04:37 UTC |
be13be1 | Prashant Pandey | 10 April 2020, 03:28:35 UTC | Fixing function name bug. | 10 April 2020, 03:28:35 UTC |
b72cf65 | Prashant Pandey | 10 April 2020, 03:10:04 UTC | Porting changes from CQF repo. | 10 April 2020, 03:10:04 UTC |
8750e71 | Prashant Pandey | 06 December 2019, 21:01:45 UTC | Merge branch 'development' of github.com:splatlab/squeakr into development | 06 December 2019, 21:01:45 UTC |
f3e3991 | Prashant Pandey | 06 December 2019, 21:01:37 UTC | Update lognumslots.sh script according to the new ntCard format. | 06 December 2019, 21:01:37 UTC |
aa30936 | Prashant Pandey | 11 October 2019, 04:43:32 UTC | Fixing a minor bug in handling symbol N at the end of the read. | 11 October 2019, 04:43:32 UTC |
5b7b3e8 | Prashant Pandey | 13 August 2019, 04:20:17 UTC | Removing fallocate and updating version to 0.7 | 13 August 2019, 04:20:17 UTC |
1ab98c9 | Prashant Pandey | 03 August 2019, 00:06:16 UTC | partitioned counter files. | 03 August 2019, 00:06:16 UTC |
0f6ef28 | Prashant Pandey | 03 August 2019, 00:04:41 UTC | Adding new partitioned counter code from the CQF. | 03 August 2019, 00:04:41 UTC |
57fe816 | Prashant Pandey | 08 July 2019, 20:41:11 UTC | Removing ntHash file. Not needed. | 08 July 2019, 20:41:11 UTC |
0c000e5 | Prashant Pandey | 08 July 2019, 20:39:33 UTC | Merge branch 'master' into development | 08 July 2019, 20:39:34 UTC |
5eeb02f | Prashant Pandey | 08 July 2019, 17:16:02 UTC | Merge branch 'development' | 08 July 2019, 17:16:03 UTC |
d0e0eae | Prashant Pandey | 08 July 2019, 17:15:49 UTC | Removing fallocate call from file-backed CQF code in Squeakr. Not needed. | 08 July 2019, 17:15:49 UTC |
8a57916 | Prashant Pandey | 08 April 2019, 20:29:45 UTC | Merge branch 'development' | 08 April 2019, 20:29:46 UTC |
16742be | Prashant Pandey | 08 April 2019, 20:29:04 UTC | Updating lognumslots.sh script based on the new ntCard format. | 08 April 2019, 20:29:04 UTC |
346f581 | Prashant Pandey | 04 January 2019, 19:24:18 UTC | Merge branch 'development' | 04 January 2019, 19:24:19 UTC |
f5d2feb | Prashant Pandey | 04 January 2019, 19:24:04 UTC | Chaing info to mmap Squeakr file. | 04 January 2019, 19:24:04 UTC |
88589e9 | Prashant Pandey | 04 January 2019, 19:21:35 UTC | Merge branch 'master' into development | 04 January 2019, 19:21:36 UTC |
251dfec | Prashant Pandey | 21 December 2018, 16:44:29 UTC | Update README.md | 21 December 2018, 16:44:29 UTC |
4ae3ca9 | Prashant Pandey | 06 November 2018, 17:51:34 UTC | Merge branch 'development' | 06 November 2018, 17:51:35 UTC |
ba24903 | Prashant Pandey | 06 November 2018, 17:51:20 UTC | Removing todo list. | 06 November 2018, 17:51:20 UTC |
754a28c | Prashant Pandey | 06 November 2018, 17:49:39 UTC | Merge branch 'development' | 06 November 2018, 17:49:40 UTC |
12dcdc7 | Prashant Pandey | 06 November 2018, 17:49:24 UTC | minor change in script. | 06 November 2018, 17:49:24 UTC |
c1bd187 | Prashant Pandey | 06 November 2018, 17:47:38 UTC | Merge branch 'refactoring_new_cli' into development | 06 November 2018, 17:47:41 UTC |
a4d4b0e | Prashant Pandey | 06 November 2018, 17:45:37 UTC | merge | 06 November 2018, 17:45:37 UTC |
8e25799 | Prashant Pandey | 06 November 2018, 17:42:52 UTC | Merge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli | 06 November 2018, 17:43:57 UTC |
9acdaf5 | Prashant Pandey | 06 November 2018, 17:42:52 UTC | Merge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli | 06 November 2018, 17:42:52 UTC |
eaad699 | Prashant Pandey | 06 November 2018, 16:29:10 UTC | more on README. | 06 November 2018, 17:42:13 UTC |
8ebaff7 | Prashant Pandey | 06 November 2018, 16:29:10 UTC | more on README. | 06 November 2018, 16:29:10 UTC |
a401367 | Prashant Pandey | 06 November 2018, 16:28:13 UTC | more on README. | 06 November 2018, 16:28:13 UTC |
1d166e1 | Prashant Pandey | 06 November 2018, 16:24:51 UTC | more on README. | 06 November 2018, 16:24:51 UTC |
f1a8ced | Prashant Pandey | 06 November 2018, 16:05:18 UTC | minor error log change. | 06 November 2018, 16:05:18 UTC |
83df47e | Prashant Pandey | 06 November 2018, 15:57:00 UTC | Updating README. | 06 November 2018, 15:57:00 UTC |
d7fd93e | Prashant Pandey | 06 November 2018, 15:46:09 UTC | Updating README. | 06 November 2018, 15:46:09 UTC |
a315fe3 | Prashant Pandey | 01 November 2018, 21:17:29 UTC | minor fix in filtering.. | 01 November 2018, 21:17:29 UTC |
9bea05f | Prashant Pandey | 01 November 2018, 20:43:41 UTC | removing a dangling cout.. | 01 November 2018, 20:43:41 UTC |
ad17e0a | Prashant Pandey | 01 November 2018, 20:39:36 UTC | minor fix in filtering code for no counts.. | 01 November 2018, 20:39:36 UTC |
e8b9aa9 | Rob Patro | 01 November 2018, 15:16:09 UTC | Update reader.h Change default `part_size` | 01 November 2018, 15:16:09 UTC |
797f838 | Rob Patro | 01 November 2018, 15:15:39 UTC | Update count.cc | 01 November 2018, 15:15:39 UTC |
3adf630 | Rob Patro | 01 November 2018, 15:14:57 UTC | Update gqf_cpp.h fix return type for range() | 01 November 2018, 15:14:57 UTC |
52c8384 | Prashant Pandey | 08 October 2018, 16:49:23 UTC | Merge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli | 08 October 2018, 16:49:23 UTC |
e55f450 | Prashant Pandey | 08 October 2018, 16:49:17 UTC | Fixing a k-mer parsing corner case when N is the last base of the read. | 08 October 2018, 16:49:17 UTC |
0bec58e | Prashant Pandey | 16 September 2018, 22:21:34 UTC | Changing open flag in qf_usefile. | 16 September 2018, 22:21:34 UTC |
56bf8a4 | Prashant Pandey | 13 September 2018, 23:45:54 UTC | minor gqf file fix porting. | 13 September 2018, 23:45:54 UTC |
3f7c4f6 | Prashant Pandey | 18 August 2018, 02:05:41 UTC | Porting CQF changes in the initfile and usefile API. | 18 August 2018, 02:05:41 UTC |
2b9f036 | Prashant Pandey | 13 August 2018, 22:49:18 UTC | updating todo. | 13 August 2018, 22:49:18 UTC |
000ef16 | Prashant Pandey | 13 August 2018, 18:00:02 UTC | Adding info command to Squeakr. | 13 August 2018, 18:00:02 UTC |
a509af4 | Prashant Pandey | 11 August 2018, 06:55:26 UTC | minor changes. | 11 August 2018, 06:55:26 UTC |
9c48515 | Prashant Pandey | 10 August 2018, 20:28:45 UTC | minor | 10 August 2018, 20:28:45 UTC |
28b68af | Prashant Pandey | 10 August 2018, 19:40:21 UTC | minor bug in testing. | 10 August 2018, 19:40:21 UTC |
ba9e500 | Prashant Pandey | 10 August 2018, 18:18:21 UTC | fixing minor resize bug. | 10 August 2018, 18:18:21 UTC |
c8b7f7b | Prashant Pandey | 08 August 2018, 23:47:41 UTC | Fixing resizing issue. | 08 August 2018, 23:47:41 UTC |
7bbb6ee | Prashant Pandey | 08 August 2018, 05:23:19 UTC | minor resizing changes. | 08 August 2018, 05:23:19 UTC |
e15c583 | Prashant Pandey | 07 August 2018, 18:50:02 UTC | partial argument check for auto resizing. | 07 August 2018, 18:50:02 UTC |
24737c4 | Prashant Pandey | 02 August 2018, 19:55:32 UTC | Porting updated code from CQF. | 02 August 2018, 19:55:32 UTC |
0d506fc | Prashant Pandey | 01 August 2018, 22:41:28 UTC | Removing metadata updates in the CQF code. | 01 August 2018, 22:41:28 UTC |
9392eaa | Prashant Pandey | 01 August 2018, 03:46:24 UTC | 1. Porting latest CQF code. 2.Fixing some commands issues from the todo file. 3. Fixing author blocks. | 01 August 2018, 03:46:24 UTC |
97e1d99 | Rob Johnson | 31 July 2018, 23:05:09 UTC | todo | 31 July 2018, 23:05:09 UTC |
9845a02 | Prashant Pandey | 26 July 2018, 22:23:24 UTC | Adding config file. | 26 July 2018, 22:23:24 UTC |
a6e1560 | Prashant Pandey | 26 July 2018, 01:32:34 UTC | Adding a version number in squeakr config. | 26 July 2018, 01:32:34 UTC |
18edf83 | Prashant Pandey | 26 July 2018, 00:27:13 UTC | Ported code from the CQF. Adding cutoff and no-count argument. Estimation works properly. | 26 July 2018, 00:27:13 UTC |
1042510 | Prashant Pandey | 25 July 2018, 07:20:21 UTC | Estimation code working. | 25 July 2018, 07:20:21 UTC |
efe3b64 | Prashant Pandey | 24 July 2018, 00:59:19 UTC | Updating make clean to remove the object dir. | 24 July 2018, 00:59:19 UTC |
fbc81b7 | Prashant Pandey | 23 July 2018, 22:38:43 UTC | Ported latest CQF API. Tested on the sample data set. | 23 July 2018, 22:38:43 UTC |
5f2ff63 | Prashant Pandey | 17 July 2018, 18:21:11 UTC | Partial commit | 17 July 2018, 18:21:11 UTC |
8918f96 | Prashant Pandey | 14 July 2018, 06:49:08 UTC | tested query and listing. | 14 July 2018, 06:49:08 UTC |
3113ae8 | Prashant Pandey | 14 July 2018, 06:40:26 UTC | 1. Removing warning flags. 2. Adding cutoff. | 14 July 2018, 06:40:26 UTC |
5424c50 | Prashant Pandey | 26 June 2018, 01:11:06 UTC | Removing unwanted code. | 26 June 2018, 01:11:06 UTC |
3c95ad4 | Prashant Pandey | 26 June 2018, 00:42:26 UTC | Adding cutoff argument. | 26 June 2018, 00:42:26 UTC |
48a4145 | Prashant Pandey | 26 June 2018, 00:41:55 UTC | Adding cutoff argument. | 26 June 2018, 00:41:55 UTC |
55f0f3f | Prashant Pandey | 26 June 2018, 00:35:27 UTC | fixing a small bug in k-mer parsing. | 26 June 2018, 00:35:27 UTC |
6780878 | Prashant Pandey | 26 June 2018, 00:03:03 UTC | Adding code for write k-mer size at the end of the file. | 26 June 2018, 00:03:03 UTC |
19748c0 | Prashant Pandey | 25 June 2018, 22:22:42 UTC | Adding listing k-mers during query. | 25 June 2018, 22:22:42 UTC |
7438802 | Prashant Pandey | 25 June 2018, 21:32:45 UTC | fixing list API. | 25 June 2018, 21:32:45 UTC |
79d8bfa | Prashant Pandey | 25 June 2018, 21:28:18 UTC | some more fixes in the CLI | 25 June 2018, 21:28:18 UTC |
03aee16 | Prashant Pandey | 25 June 2018, 21:26:09 UTC | some more fixes in the CLI | 25 June 2018, 21:26:09 UTC |
64161f1 | Prashant Pandey | 02 June 2018, 01:08:33 UTC | Tested listing kmers. | 02 June 2018, 01:08:33 UTC |
8d7a80f | Prashant Pandey | 02 June 2018, 00:02:56 UTC | Minor bug. | 02 June 2018, 00:02:56 UTC |
9b9b095 | Prashant Pandey | 02 June 2018, 00:00:48 UTC | Changed query API. | 02 June 2018, 00:00:48 UTC |
cbbf9df | Prashant Pandey | 01 June 2018, 06:25:18 UTC | Adding logger to time. | 01 June 2018, 06:25:18 UTC |
3a74eae | Prashant Pandey | 01 June 2018, 06:23:53 UTC | Adding logger to time. | 01 June 2018, 06:23:53 UTC |
61cfa12 | Prashant Pandey | 01 June 2018, 06:17:12 UTC | Adding console logging to other files. | 01 June 2018, 06:17:12 UTC |
604dc85 | Prashant Pandey | 01 June 2018, 06:10:07 UTC | Using logger to log. | 01 June 2018, 06:10:07 UTC |
a072e10 | Prashant Pandey | 31 May 2018, 17:13:14 UTC | Removed auto resize. | 31 May 2018, 17:13:14 UTC |
4ab19dc | Prashant Pandey | 31 May 2018, 00:49:57 UTC | Making size and threads optional. | 31 May 2018, 00:49:57 UTC |
245fda6 | Prashant Pandey | 30 May 2018, 22:45:32 UTC | Test counting. | 30 May 2018, 22:45:32 UTC |
4ea7f50 | Prashant Pandey | 30 May 2018, 20:29:40 UTC | Testing counting now. | 30 May 2018, 20:29:40 UTC |
8496787 | Prashant Pandey | 30 May 2018, 19:52:58 UTC | More refactoring. Code compiles now. | 30 May 2018, 19:52:58 UTC |
333702c | Prashant Pandey | 30 May 2018, 06:21:36 UTC | More refactoring. Getting closer. | 30 May 2018, 06:21:36 UTC |
35325d2 | Prashant Pandey | 29 May 2018, 22:35:39 UTC | More refactoring. Getting closer. | 29 May 2018, 22:35:39 UTC |
db42e05 | Prashant Pandey | 11 May 2018, 19:34:35 UTC | checking in intermediate code. | 11 May 2018, 19:34:35 UTC |
a486bf4 | rtjohnso | 02 March 2018, 20:52:51 UTC | Merge pull request #28 from sjackman/patch-1 qf_serialize: Add the filename to the error message | 02 March 2018, 20:52:51 UTC |
dee0459 | Shaun Jackman | 27 February 2018, 16:56:18 UTC | qf_serialize: Add filename to error message | 27 February 2018, 16:59:24 UTC |
684ebb7 | Prashant Pandey | 25 January 2018, 18:57:37 UTC | Merge branch 'development' | 25 January 2018, 18:59:16 UTC |
6507097 | Prashant Pandey | 25 January 2018, 18:55:54 UTC | Adding instructions to use the script to calculate the log of the number of slots. | 25 January 2018, 18:55:54 UTC |
63d06de | Prashant Pandey | 25 January 2018, 18:51:34 UTC | Adding the script to estmiate the size of the CQF using the output from ntCard. | 25 January 2018, 18:51:34 UTC |
6741efd | Rob Patro | 07 December 2017, 15:38:02 UTC | update clipp | 07 December 2017, 15:38:02 UTC |
53c0ce4 | Rob Patro | 07 December 2017, 15:37:26 UTC | update clipp | 07 December 2017, 15:37:26 UTC |
5a17a02 | Rob Patro | 05 December 2017, 18:38:26 UTC | update clipp | 05 December 2017, 18:38:26 UTC |
29a8ee5 | Rob Patro | 05 December 2017, 18:38:02 UTC | update clipp | 05 December 2017, 18:38:02 UTC |