| f268b92 | Joost van Griethuysen | 06 October 2017, 15:51:40 UTC | DOCS: Update version in README | 06 October 2017, 15:51:40 UTC |
| ee56ab5 | Joost van Griethuysen | 06 October 2017, 13:50:42 UTC | PyRadiomics 1.3.0 | 06 October 2017, 13:50:42 UTC |
| 403cb74 | Joost van Griethuysen | 06 October 2017, 13:21:05 UTC | Merge pull request #295 from JoostJM/add-gldm Add Gray Level Dependence Matrix (GLDM) | 06 October 2017, 13:21:05 UTC |
| 531e886 | Joost van Griethuysen | 17 July 2017, 09:04:35 UTC | ENH: Add Gray Level Depende Matrix (GLDM) | 06 October 2017, 12:31:49 UTC |
| fda2a25 | Joost van Griethuysen | 06 October 2017, 12:24:51 UTC | Merge pull request #296 from JoostJM/add-ngtdm Add Neighbouring Gray Tone Difference Matrix (NGTDM) | 06 October 2017, 12:24:51 UTC |
| 6933258 | Joost van Griethuysen | 14 July 2017, 13:12:44 UTC | ENH: Add Neighbouring Gray Tone Difference Matrix (NGTDM) | 13 September 2017, 00:56:08 UTC |
| 0a0eb4f | Joost van Griethuysen | 12 September 2017, 23:07:39 UTC | Merge pull request #302 from JoostJM/add-resegementation Add optional resegmentation of mask | 12 September 2017, 23:07:39 UTC |
| 4022f56 | Andrey Fedorov | 07 September 2017, 16:48:35 UTC | Merge pull request #301 from fedorov/add-docker ENH: update cli-docker to use CentOS 6 | 07 September 2017, 16:48:35 UTC |
| 8fc0a41 | Andrey Fedorov | 06 September 2017, 20:00:41 UTC | ENH: update cli-docker to use CentOS 6 | 07 September 2017, 16:47:35 UTC |
| 5da1850 | Joost van Griethuysen | 07 September 2017, 15:59:05 UTC | DOCS: Update reference to getImageTypes() function to reflect change by #291 PR 291 changed the name of the function, but failed to correct the reference to it in the developers section of the documentation. | 07 September 2017, 15:59:05 UTC |
| 390aff4 | Joost van Griethuysen | 04 September 2017, 17:25:26 UTC | ENH: Add resegmentation Add functionality to resegment the mask prior to calculation of features (ony applies to firstorder / texture, no resegmentation possible prior to shape feature calculation). Introduces new parameter `resegmentRange`, a list of 2 floats which define the lower and upper threshold, respectively. Values outside the range specified are removed from the mask. When the resultant size is too small (parameter `minimumROISize`, default 1), an error is logged and the original mask is used. A value of None (the default value) for the parameter `resegmentRange` disables resegmentation. | 07 September 2017, 15:36:06 UTC |
| 4f9abf1 | Joost van Griethuysen | 07 September 2017, 15:31:40 UTC | Merge pull request #299 from JoostJM/update-resampling Allow a 0 value for output spacing when resampling | 07 September 2017, 15:31:40 UTC |
| 0f6a0d1 | Joost van Griethuysen | 04 September 2017, 15:37:48 UTC | ENH: Allow a 0 value for output spacing when resampling When resampling, allow the output spacing for any dimension to be set to 0 (the parameter 'resampledPixelSpacing' still needs to be a sequence of 3 elements, but the value of any element can be 0). Doing so will enable 'preserving' the original spacing, as 0 values are replaced with the original spacing for that dimension (original spacing of the mask). This way, it is possible to only resample in-plane (by setting the out-of-plane output spacing to 0). Additionally, move the check between original and resampled spacing to after the size check (no resampling over dimensions for which bounding box size = 1) and build in a tolerance (1e-5 + 1e-8 * abs(resampledspacing)). Finally, fix data type for resampled spacing in the validation schema for parameter files (change from integer to float). | 06 September 2017, 14:49:00 UTC |
| 1c52a10 | Andrey Fedorov | 06 September 2017, 14:43:34 UTC | Merge pull request #297 from fedorov/add-docker ENH: add a dockerfile that exposes command line tools | 06 September 2017, 14:43:34 UTC |
| c8aab69 | Joost van Griethuysen | 06 September 2017, 14:33:40 UTC | Merge pull request #300 from JoostJM/remove-duplicate-features Remove Sum Variance | 06 September 2017, 14:33:40 UTC |
| 70f1c48 | Joost van Griethuysen | 05 September 2017, 00:30:55 UTC | Fix typos in CHANGES.rst | 05 September 2017, 00:30:55 UTC |
| 147c1c8 | Joost van Griethuysen | 05 September 2017, 00:15:31 UTC | STYL: Correct difference variance formula (docs) Correct error in difference variance formula as pointed out by @clarehchao. Additionally, fix an error in the exampleCT settings (enabled shape features erroneously listed as glcm features). | 05 September 2017, 00:15:31 UTC |
| 81f32fd | Joost van Griethuysen | 04 September 2017, 20:52:20 UTC | Update baseline | 04 September 2017, 21:19:41 UTC |
| de633a9 | Joost van Griethuysen | 04 September 2017, 20:37:44 UTC | Remove Sum Variance feature Sum Variance is mathematically equal to Cluster Tendency, therefore remove Sum Variance from PyRadiomics. Add a new section to the documentation that lists removed features with the reason why this was done (here including the proof that Sum Variance and Cluster Tendency are equal). Additionally, Sum Average is very similar to Joint Average (if and only if the GLCM is symmetrical, Sum Average = 2 * Joint Average). As there is a difference possible between these features, but not in the case of 'default' settings, Sum Average is not removed, but disabled in the default parameter files. | 04 September 2017, 20:52:10 UTC |
| b5bddb5 | Joost van Griethuysen | 04 September 2017, 20:14:12 UTC | STYL: Update feature function names to better reflect feature names Some feature function names differed from the feature name due to changes to enhance comparability to IBSI defined features. Update the function names to reflect the feature names. | 04 September 2017, 20:14:12 UTC |
| 956175e | Joost van Griethuysen | 04 September 2017, 20:09:18 UTC | DOCS: Update GLCM formula documentation u_x and u_y are represented in the documentation as being a function of i and j, respectively. However, these variables are both scalars. Update the documentation to reflect this. | 04 September 2017, 20:09:18 UTC |
| 26b9ef3 | Joost van Griethuysen | 04 September 2017, 17:43:49 UTC | BUG: Fix name of force2D when generating angles (GLRLM and GLSZM) Because GLRLM and GLSZM are forced with distance 1, other parameters are passed manually to the generate angles function. However, the `force2D` parameter was named incorrectly and as such, ignored. Fix the name to enable forced 2D extraction for GLRLM and GLSZM. | 04 September 2017, 17:43:49 UTC |
| 5ce9f48 | Joost van Griethuysen | 01 September 2017, 15:42:16 UTC | DOCS: Fix error in usage documentation In the documentation on using the feature classes directly, the line to enable all features in the first order feature class was missing. This resulted in no features being calculated, as on the feature class level, all features are disabled by default. | 01 September 2017, 15:42:16 UTC |
| 7dcc2a9 | Joost van Griethuysen | 31 August 2017, 13:40:53 UTC | Change license in setup.py to reflect change by #272 | 31 August 2017, 13:40:53 UTC |
| 1675ac7 | Joost van Griethuysen | 29 August 2017, 19:35:22 UTC | DOCS: Add changes of #294 to changelog | 29 August 2017, 19:35:22 UTC |
| ef2c40f | Joost van Griethuysen | 29 August 2017, 19:29:22 UTC | Merge pull request #294 from JoostJM/docs-add-contributing Add contributing to documentation | 29 August 2017, 19:29:22 UTC |
| 96da6ae | Andrey Fedorov | 23 August 2017, 15:03:22 UTC | ENH: add a dockerfile that exposes command line tools | 23 August 2017, 15:03:22 UTC |
| c73e7e3 | Joost van Griethuysen | 23 August 2017, 08:59:55 UTC | DOCS: Update reference to SlicerRadiomics in the readme | 23 August 2017, 08:59:55 UTC |
| d1c5bf4 | Joost van Griethuysen | 23 August 2017, 08:53:10 UTC | DOCS: Update links to contributing guidlines from documentation and readme | 23 August 2017, 08:55:42 UTC |
| 0dca895 | Joost van Griethuysen | 22 August 2017, 08:12:30 UTC | DOCS: Add contributing to documentation Change CONRTRIBUTING.md to restructured text and include it in the sphinx generated documentation. Additionally, add a section to encourage users to share their parameter files in the PyRadiomics repository. | 23 August 2017, 08:38:10 UTC |
| de5e977 | Joost van Griethuysen | 18 August 2017, 14:01:51 UTC | TEST: Add test for example settings Add a nosetest that checks all yaml structured files (= files with `.yaml` or `. yml` extension) in `examples/exampleSettings`. All found files are validated using PyKwalify and the paramSchema and functions in PyRadiomics Additionally, add a simple python script to manually test a parameter file (`bin/testParams`). | 23 August 2017, 08:16:41 UTC |
| 7db7798 | Joost van Griethuysen | 23 August 2017, 08:16:05 UTC | DOCS: Update Changes.rst | 23 August 2017, 08:16:05 UTC |
| 9ae44b2 | Joost van Griethuysen | 23 August 2017, 08:11:24 UTC | STYL: Update log messages to better reflect changes made by #291 | 23 August 2017, 08:11:24 UTC |
| 425c7e9 | Joost van Griethuysen | 23 August 2017, 07:59:17 UTC | Merge pull request #291 from JoostJM/revert-280 Revert 280 and 281, update customization names and documentation | 23 August 2017, 07:59:17 UTC |
| ff622d8 | Joost van Griethuysen | 21 August 2017, 11:55:36 UTC | STYL: Revise parameter naming Make distinction between different categories of parameters more explicit, and rename categories to better reflect their definition. PyRadiomics can be customized via 3 categories of *parameters*: 1. "imageType": specifies filters / image types that can be used to extract features from 2. "featureClass": specifies which feature classes and features should be extracted 3. "setting": specifies all setting to customize how the extraction is done. In PyRadiomics, "parameter" refers to one or more customization categories and "setting" refers explicitly to type 3 customization. Furthermore, document that only type 3 parameters can be provided at initialization when not using the parameter file (type 1 and 2 have to be changed using dedicated functions in featureextractor (type 1 and 2) or the individual feature classes (type 2). Especially for type 1, this includes renaming of various variables, including the name used in the parameter file ("imageType" in stead of "inputImage"). Finally, expand documentation on making the parameter file, including an example directly in the documentation (instead of just referring to the repository). | 21 August 2017, 13:30:23 UTC |
| fd36b18 | Joost van Griethuysen | 21 August 2017, 08:04:27 UTC | Revert 280 / 280 Reverts #280 / #281, as this change introduces some confusion into the what goes into `**kwargs` for initialization of featureextractor (or one of the feature classes). `**kwargs` only contains settings (i.e. one of the three categories of customization). PRs #280 and #281 included `inputImages` (one of the other categories) to enable customizing the enabled input image types in the slicer extension. However, the functionality to customize this is already present in featureextractor through function calls (such as `enableAllInputImages()`). Therefore, revert these PRs and update the slicer extension to make use of this API. | 21 August 2017, 08:04:27 UTC |
| a3fa6c7 | Joost van Griethuysen | 21 August 2017, 06:16:33 UTC | Merge pull request #290 from fabianbalsiger/master Fixes typos | 21 August 2017, 06:16:33 UTC |
| a8d63c9 | Fabian Balsiger | 18 August 2017, 13:52:33 UTC | Merge branch 'master' into master | 18 August 2017, 13:52:33 UTC |
| 462f347 | Fabian Balsiger | 18 August 2017, 13:36:06 UTC | DOCS: typo Volum to Volume | 18 August 2017, 13:36:06 UTC |
| aa51f3f | Fabian Balsiger | 18 August 2017, 13:35:05 UTC | DOCS: typo Volum to Volume | 18 August 2017, 13:35:05 UTC |
| df8d79d | Joost van Griethuysen | 18 August 2017, 10:28:40 UTC | BUG: Fix capitalization error in example settings Filter should be "Wavelet", not "wavelet" | 18 August 2017, 10:28:40 UTC |
| 181e599 | Joost van Griethuysen | 16 August 2017, 14:53:00 UTC | Merge pull request #284 from JoostJM/document-ibsi-compliance Add reference to IBSI feature definitions | 16 August 2017, 14:53:00 UTC |
| e0cba85 | Joost van Griethuysen | 16 August 2017, 14:48:48 UTC | Merge pull request #274 from JoostJM/revise-base-initialization Revise style in base initialization | 16 August 2017, 14:48:48 UTC |
| 3288643 | Joost van Griethuysen | 16 August 2017, 14:48:32 UTC | Merge pull request #288 from JoostJM/document-log Make sigma documentation more clear | 16 August 2017, 14:48:32 UTC |
| f496d40 | Joost van Griethuysen | 15 August 2017, 06:32:44 UTC | STYL: Make sigma documentation more clear | 16 August 2017, 10:05:37 UTC |
| 4ca4ead | Joost van Griethuysen | 15 August 2017, 07:38:28 UTC | STYL: Update some variable and function names for clarity ROICoordinates --> labelledVoxelCoordinates size --> boundingBoxSize _initLesionWiseCalculation() --> _initSegementBasedCalculation() Additionally, add feature class name to log message when feature class is initialized. | 16 August 2017, 09:58:01 UTC |
| d41028a | Joost van Griethuysen | 01 June 2017, 11:44:28 UTC | STYL: Revise style in base initialization | 16 August 2017, 09:58:01 UTC |
| f75de97 | Joost van Griethuysen | 15 August 2017, 11:16:44 UTC | DOCS: Add reference to IBSI feature definitions Add a reference to the feature definitions by IBSI, and document where PyRadiomics features differ. | 16 August 2017, 09:57:23 UTC |
| 8e01df7 | Joost van Griethuysen | 16 August 2017, 09:55:24 UTC | Merge pull request #287 from JoostJM/add-python2-docker Fix missing python 2 environment | 16 August 2017, 09:55:24 UTC |
| d2126d1 | Joost van Griethuysen | 16 August 2017, 09:32:52 UTC | BUG: Fix loading parameter file in notebooks. Some recent changes broke source code in some notebooks (wrong/missing imports, missing new lines). | 16 August 2017, 09:39:55 UTC |
| 968a962 | Joost van Griethuysen | 16 August 2017, 06:51:13 UTC | BUG: Fix missing python 2 environment See also [#433](https://github.com/jupyter/docker-stacks/pull/433) on jupyter/docker-stack. Python 2 support is now removed from jupyter/datascience-notebook. Update dockerfile and config.yml to install python2 kernel manually. | 16 August 2017, 09:06:34 UTC |
| cb17d65 | Joost van Griethuysen | 16 August 2017, 09:04:08 UTC | BUG: Fix JSON error in RadiomicsExample.ipynb Similar error and fix as previous 2 commits; missing comma in notebook breaks JSON decoding. | 16 August 2017, 09:04:08 UTC |
| 1043547 | Joost van Griethuysen | 16 August 2017, 08:59:06 UTC | BUG: Fix JSON error in FilteringEffects.ipynb Similar error and fix as previous commit; missing comma in notebook breaks JSON decoding. | 16 August 2017, 08:59:06 UTC |
| c8fa6ae | Joost van Griethuysen | 16 August 2017, 08:06:43 UTC | BUG: Fix JSON error in feature visualization notebooks In FeatureVisualization.ipynb and FeatureVisualizationWithClustering.ipynb, a missing comma caused a JSON decode error, breaking the notebook. Insert missing commas to fix. | 16 August 2017, 08:06:43 UTC |
| 73233c6 | Joost van Griethuysen | 16 August 2017, 06:38:33 UTC | Merge pull request #285 from JoostJM/fix-urllib-python3-compatibility Fix python3 incompatibility when getting a test case | 16 August 2017, 06:38:33 UTC |
| 511d02d | Joost van Griethuysen | 15 August 2017, 12:25:18 UTC | TEST: Update dockerfile only run certain notebooks Only run helloRadiomics.ipynb, helloFeatureClass.ipynb and PyRadiomicsExample.ipynb, as these extensively test PyRadiomics, but are not dependent on 3rd party URLs to run correctly. Additionally, update the paths to ensure correct relative paths. | 16 August 2017, 06:23:18 UTC |
| 9d278bb | Joost van Griethuysen | 15 August 2017, 11:47:06 UTC | BUG: Add directory check when downloading example data When downloading example data, the feature visualization notebooks assumes a directory called `example_data` exists. However, if this is not the case, an error is thrown when trying to download the example_data zip file. Add a check to determine if the directory exists and if not, create a directory. Fixes #276 | 16 August 2017, 06:23:18 UTC |
| f1550c6 | Joost van Griethuysen | 15 August 2017, 11:39:27 UTC | BUG: Fix python3 incompatibility when getting a test case In python 3, the function `urlretrieve` is moved. Prevent incompatibility by using implementation in `six.moves`. | 16 August 2017, 06:23:18 UTC |
| 8c4313d | Steve Pieper | 15 August 2017, 18:18:03 UTC | Fix url path for data and citation in notebook example | 15 August 2017, 18:18:03 UTC |
| 35dbff6 | Steve Pieper | 15 August 2017, 18:17:43 UTC | Fix Params.yaml path in notebook examples | 15 August 2017, 18:17:43 UTC |
| 8b73d4c | Steve Pieper | 15 August 2017, 18:06:03 UTC | fix download links in notebook example | 15 August 2017, 18:06:03 UTC |
| 9e73788 | Joost van Griethuysen | 15 August 2017, 08:00:02 UTC | Merge pull request #273 from JoostJM/add-example-settings Add example settings | 15 August 2017, 08:00:02 UTC |
| 13274ff | Steve Pieper | 01 August 2017, 23:14:59 UTC | Merge pull request #280 from fedorov/update-inputImage BUG: initialize inputImage from kwargs | 01 August 2017, 23:14:59 UTC |
| 214b848 | Andrey Fedorov | 01 August 2017, 22:53:09 UTC | BUG: remove inputImage from settings It appears that the presence of this attribute in settings causes feature calculation failure in https://github.com/Radiomics/SlicerRadiomics/pull/26 | 01 August 2017, 23:02:10 UTC |
| c1eb7ec | Andrey Fedorov | 01 August 2017, 21:31:34 UTC | BUG: fix logger call | 01 August 2017, 21:31:34 UTC |
| c3abc7e | Andrey Fedorov | 01 August 2017, 21:20:07 UTC | BUG: initialize inputImage from kwargs 'inputImage' parameter passed to the constructor in kwargs was ignored | 01 August 2017, 21:20:07 UTC |
| 9542d76 | Joost van Griethuysen | 21 July 2017, 15:04:06 UTC | Merge pull request #277 from fabianbalsiger/normalizeImage-fix BUG: outlier removal not working | 21 July 2017, 15:04:06 UTC |
| 7ee35d9 | Fabian Balsiger | 21 July 2017, 13:39:48 UTC | BUG: outlier removal not working | 21 July 2017, 13:39:48 UTC |
| f2cbd3d | Joost van Griethuysen | 17 July 2017, 07:44:33 UTC | Merge pull request #272 from JoostJM/update-license Update license to 3-clause BSD | 17 July 2017, 07:44:33 UTC |
| a49797a | Joost van Griethuysen | 14 July 2017, 12:31:16 UTC | ENH: Add example settings for CT and MRI | 14 July 2017, 12:32:29 UTC |
| e047068 | Joost van Griethuysen | 14 July 2017, 08:11:21 UTC | LICENSE: Add "not intended for clinical use" disclaimer | 14 July 2017, 08:11:21 UTC |
| b2fe09b | Joost van Griethuysen | 12 July 2017, 16:03:36 UTC | LICENSE: Update license to 3-clause BSD | 14 July 2017, 08:03:46 UTC |
| 32da2c9 | Joost van Griethuysen | 12 July 2017, 18:12:28 UTC | Merge pull request #271 from JoostJM/update-ref Update reference, move section customization | 12 July 2017, 18:12:28 UTC |
| 8ec05ab | Joost van Griethuysen | 12 July 2017, 15:52:00 UTC | DOCS: Update reference, move section customization Update the reference to reflect it is accepted for pulication in Cancer Research. Move the section on customizing the extraction (and structuring the parameter file) to the top level to make it more visible. | 12 July 2017, 15:58:10 UTC |
| 21375ab | Joost van Griethuysen | 12 July 2017, 14:44:21 UTC | Merge pull request #270 from JoostJM/Remove-circular-import Remove circular import | 12 July 2017, 14:44:21 UTC |
| 17ec108 | Joost van Griethuysen | 05 July 2017, 15:44:23 UTC | ENH: Remove circular import `__init__.py` imports `base`, while `base` imports `radiomics` (`__init__.py`). However, base is only needed for the inheritance check in `getFeatureClasses`, change this to allow removal of the circular import. | 05 July 2017, 15:44:23 UTC |
| 3e09103 | Joost van Griethuysen | 28 June 2017, 15:42:43 UTC | Merge pull request #265 from JoostJM/remove-empty-row-column-texture Remove empty row column texture | 28 June 2017, 15:42:43 UTC |
| 8dcfc68 | Joost van Griethuysen | 28 June 2017, 15:34:13 UTC | Merge pull request #264 from JoostJM/update-eigenvector-decomposition Replace SimpleITK's eigenvalue decomposition with a python one | 28 June 2017, 15:34:13 UTC |
| 586718c | Joost van Griethuysen | 27 June 2017, 15:08:33 UTC | STYL: Remove unused variable | 27 June 2017, 15:08:33 UTC |
| 01dd85f | Joost van Griethuysen | 01 June 2017, 08:21:08 UTC | DOCS: Document changes | 16 June 2017, 08:00:13 UTC |
| 6fa4bcf | Joost van Griethuysen | 16 June 2017, 07:53:29 UTC | DOCS: Document changes | 16 June 2017, 07:58:53 UTC |
| e4045b2 | Joost van Griethuysen | 12 June 2017, 16:10:32 UTC | BUG: Replace SimpleITK's eigenvalue decomposition with a python one The eigenvalue decomposition calculation does not account for non-consecutive voxels in a line (along x dimension), causing the calculated values for the principal moments to be erroneous when a lesion has 'holes' in it. Furthermore, it assumes that all voxels on line x = i have identical y and z coordinates, but this is not necessarily the case. | 16 June 2017, 07:49:34 UTC |
| e3a6240 | Joost van Griethuysen | 30 May 2017, 09:35:37 UTC | ENH: Remove unsused rows and columns from texture matrices Before computing features, remove unused rows and columns from the texture matrices and update the i and j vectors accordingly. This reduces the size of the matrices, thereby both reducing the computation time for very large segmentations and reducing the memory requirements. | 09 June 2017, 08:51:00 UTC |
| 0c0d2fd | Joost van Griethuysen | 07 June 2017, 10:56:16 UTC | Merge pull request #262 from JoostJM/script-update Add case-specific labels in batchprocessing | 07 June 2017, 10:56:16 UTC |
| 2a4a427 | Joost van Griethuysen | 29 May 2017, 16:07:56 UTC | ENH: Add case-specific labels in batchprocessing Add functionality to allow users to specify different labels for different combinations in the input file for batchprocessing. This is achieved through an additonal (optional) column ``Label``. Integer values in this column then take precedence over any other form of label customization (e.g. specifying the label on the command line or in the parameter file). | 01 June 2017, 11:10:14 UTC |
| 1d8e74e | Joost van Griethuysen | 01 June 2017, 11:08:33 UTC | Merge pull request #261 from JoostJM/symmetrical-glcm-bug Fix bug when creating symmetrical GLCM | 01 June 2017, 11:08:33 UTC |
| 9aa8c01 | Joost van Griethuysen | 31 May 2017, 13:11:01 UTC | DOCS: Document symmetrical GLCM bugfix | 31 May 2017, 13:11:26 UTC |
| d8032f3 | Joost van Griethuysen | 30 May 2017, 13:44:53 UTC | BUG: Fix symmetrical GLCM To make GLCM symmetrical, the python code performed an inplace addition: `P_glcm += numpy.transpose(P_glcm, (1, 0, 2))`. However, when the matrix exceeds a certain size, this produces buggy behaviour, where for some elements, the calculated value equals `P_glcm += P_glcm + numpy.transpose(P_glcm, (1, 0, 2))`. This is caused by the fact that numpy.transpose returns a *view*, and not a copy of the array. Then, if the additions have to be processed in multiple chunks, the addition will become erroneous. Use `numpy.copy` to get a transposed copy of the GLCM and not just a view of the GLCM. | 30 May 2017, 13:57:00 UTC |
| fd8abd4 | Joost van Griethuysen | 30 May 2017, 08:12:25 UTC | PyRadiomics 1.2.0 | 30 May 2017, 08:12:25 UTC |
| 737ac26 | Joost van Griethuysen | 30 May 2017, 07:40:06 UTC | PyRadiomics 1.2.0 | 30 May 2017, 07:45:16 UTC |
| f8f65df | Andrey Fedorov | 29 May 2017, 18:42:48 UTC | Merge pull request #260 from fedorov/use-corrected-mask BUG: use resampled mask for analysis | 29 May 2017, 18:42:48 UTC |
| 405f77b | Joost van Griethuysen | 29 May 2017, 16:28:07 UTC | BUG: Correct style, apply changes to examples Apply style changes to prevent flake8 errors. Apply changes in usage to the respective examples / scripts that make use of the `checkMask` function. Additionally, document the changes this PR makes to PyRadiomics in the changelog. | 29 May 2017, 18:16:36 UTC |
| c40939e | Andrey Fedorov | 25 May 2017, 20:24:10 UTC | BUG: update test | 29 May 2017, 18:16:36 UTC |
| 7233b77 | Andrey Fedorov | 25 May 2017, 20:07:18 UTC | BUG: use resampled mask for analysis This resolves #259 In the situation when the mask was corrected to compensate for the differences between the image and mask geometry, the updated mask was not propagated to be used for feature calculation. | 29 May 2017, 18:16:35 UTC |
| 75baf7b | Joost van Griethuysen | 29 May 2017, 06:49:23 UTC | Merge pull request #257 from JoostJM/update-c-glszm Enhance C GLSZM | 29 May 2017, 06:49:23 UTC |
| 1555f0e | Joost van Griethuysen | 24 May 2017, 15:00:18 UTC | DOCS: Document changes | 24 May 2017, 15:00:18 UTC |
| 267d04d | Joost van Griethuysen | 23 May 2017, 15:16:47 UTC | ENH: Implement C extension for diameters Add a C extension function to calculate maximum diameters in 2D and 3D. Additionally, python implementation of maximum diameter can return incorrect values in some edge cases. After discussion, we decided to remove support for python calculation of maximum diameters and have PyRadiomics return NaN when a user tries to compute these features in full-python mode. | 24 May 2017, 14:57:51 UTC |
| a88ae7d | Joost van Griethuysen | 24 May 2017, 12:07:22 UTC | DOCS: Update requirements in documentation Update documentation to reflect changes made in #231 | 24 May 2017, 12:07:22 UTC |
| 2184ba0 | Joost van Griethuysen | 22 May 2017, 13:05:59 UTC | ENH: Enhance C GLSZM Enhance C extension algorithm for calculating GLSZM. Instead of searching over entire image for voxels to process when growing a region, instantiate a stack (max size equal to number of voxels) to hold indices for voxels that have to be processed for the current region. When an unprocessed voxel, belonging to the ROI is found, a region is started by pushing the index of that voxels to the stack. Then a loop is started where the last added voxel in the stack is popped and its neighbours are checked. If unprocessed and belonging to the same region (same gray level), indices for those voxels are also pushed to the stack. The loop then runs until stack is exhausted (i.e. no new neighbours available, indicating the region is complete). The number of loops are counted and are equal to the size of the zone. Reset data type for mask from signed char back to char, as negative values are not needed anymore. | 24 May 2017, 09:15:24 UTC |
| 1b7810d | Joost van Griethuysen | 24 May 2017, 09:14:02 UTC | Merge pull request #255 from JoostJM/add-changelog Add changelog | 24 May 2017, 09:14:02 UTC |
