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21 June 2023, 23:52:36 UTC
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a8abacb Jakob Vanhoefer 03 February 2021, 10:53:02 UTC Merge pull request #75 from yaml2sbml-dev/develop Version 0.2.0 03 February 2021, 10:53:02 UTC
3f5c1f7 Jakob Vanhoefer 03 February 2021, 10:48:07 UTC add release notes 03 February 2021, 10:48:07 UTC
69a797b Dilan Pathirana 30 January 2021, 22:07:11 UTC Add Python 3.6 and 3.9 to CI (#70) 30 January 2021, 22:07:11 UTC
94f935b dilpath 30 January 2021, 19:34:09 UTC undo direct commit 30 January 2021, 19:34:09 UTC
bb72ca5 dilpath 30 January 2021, 19:24:21 UTC add python versions to ci 30 January 2021, 19:24:21 UTC
ad3bf5f Jakob Vanhoefer 30 January 2021, 00:17:22 UTC Merge pull request #68 from yaml2sbml-dev/feature_example_FSP Finish up examples 30 January 2021, 00:17:22 UTC
c29e959 Jakob Vanhoefer 29 January 2021, 23:22:35 UTC Merge branch 'feature_example_FSP' of https://github.com/yaml2sbml-dev/yaml2sbml into feature_example_FSP 29 January 2021, 23:22:35 UTC
4ac0641 Jakob Vanhoefer 29 January 2021, 23:22:14 UTC add references 29 January 2021, 23:22:14 UTC
fed9bc1 Jakob Vanhoefer 29 January 2021, 23:12:40 UTC Merge pull request #57 from yaml2sbml-dev/feature_version add __version__ closes #56 29 January 2021, 23:12:40 UTC
46855d9 Jakob Vanhoefer 29 January 2021, 16:56:27 UTC adress codacy 29 January 2021, 16:56:27 UTC
3aa1d60 dilpath 29 January 2021, 16:40:10 UTC codacy 29 January 2021, 16:40:10 UTC
f1272c5 dilpath 29 January 2021, 16:30:18 UTC codacy 29 January 2021, 16:30:18 UTC
c6a943c dilpath 29 January 2021, 16:16:04 UTC codacy 29 January 2021, 16:16:04 UTC
44713fb Dilan Pathirana 28 January 2021, 22:50:21 UTC Update doc/examples/Finite_State_Projection/Finite_State_Projection.ipynb 28 January 2021, 22:50:21 UTC
2c345ae Jakob Vanhoefer 28 January 2021, 21:58:28 UTC Update doc/examples/README.md Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 28 January 2021, 21:58:28 UTC
d89b24a Jakob Vanhoefer 28 January 2021, 21:58:08 UTC Update doc/examples/Finite_State_Projection/Finite_State_Projection.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 28 January 2021, 21:58:08 UTC
ebae0ec Jakob Vanhoefer 28 January 2021, 21:57:47 UTC Update doc/examples/README.md Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 28 January 2021, 21:57:47 UTC
50f017c Jakob Vanhoefer 28 January 2021, 21:57:41 UTC Update doc/examples/README.md Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 28 January 2021, 21:57:41 UTC
5470707 Jakob Vanhoefer 28 January 2021, 21:57:03 UTC Update doc/examples/Finite_State_Projection/utils.py Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 28 January 2021, 21:57:03 UTC
f468300 Jakob Vanhoefer 28 January 2021, 21:56:35 UTC Update doc/examples/Finite_State_Projection/Finite_State_Projection.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 28 January 2021, 21:56:35 UTC
cfbb0e7 Jakob Vanhoefer 28 January 2021, 21:56:24 UTC Update doc/examples/Finite_State_Projection/Finite_State_Projection.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 28 January 2021, 21:56:24 UTC
03e4489 Jakob Vanhoefer 28 January 2021, 21:56:14 UTC Update doc/examples/Finite_State_Projection/Finite_State_Projection.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 28 January 2021, 21:56:14 UTC
7e2096d Jakob Vanhoefer 28 January 2021, 17:00:14 UTC change to version 0.2.0 28 January 2021, 17:00:14 UTC
56ede88 Jakob Vanhoefer 28 January 2021, 16:43:10 UTC refactor Examples, add FSP example 28 January 2021, 16:43:10 UTC
7e803b1 Jakob Vanhoefer 28 January 2021, 16:41:27 UTC restructure Lotka Volterra Examples 28 January 2021, 16:41:27 UTC
3e4c789 Jakob Vanhoefer 28 January 2021, 16:05:21 UTC fix hardcoded directory 28 January 2021, 16:05:21 UTC
402e3ae Jakob Vanhoefer 25 January 2021, 15:50:50 UTC Merge pull request #64 from yaml2sbml-dev/feature_model_editor_example Feature model editor example closes #58 25 January 2021, 15:50:50 UTC
afd49c6 Jakob Vanhoefer 25 January 2021, 15:33:06 UTC Merge Dilans suggestions 25 January 2021, 15:33:06 UTC
e8ef262 Jakob Vanhoefer 25 January 2021, 15:32:38 UTC Update doc/examples/Lotka_Volterra_Model_Editor/Lotka_Volterra_Model_Editor.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 25 January 2021, 15:32:38 UTC
9b9a5ce Jakob Vanhoefer 25 January 2021, 15:32:31 UTC Update doc/examples/Lotka_Volterra_Model_Editor/Lotka_Volterra_Model_Editor.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 25 January 2021, 15:32:31 UTC
27f055d Jakob Vanhoefer 25 January 2021, 15:32:24 UTC Update doc/examples/Lotka_Volterra_Model_Editor/Lotka_Volterra_Model_Editor.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 25 January 2021, 15:32:24 UTC
777800c Jakob Vanhoefer 25 January 2021, 15:32:09 UTC Update doc/examples/Lotka_Volterra_Model_Editor/Lotka_Volterra_Model_Editor.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 25 January 2021, 15:32:09 UTC
f0ae4a1 Jakob Vanhoefer 25 January 2021, 15:32:01 UTC Update doc/examples/Lotka_Volterra_Model_Editor/Lotka_Volterra_Model_Editor.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 25 January 2021, 15:32:01 UTC
a215bb5 Jakob Vanhoefer 25 January 2021, 15:31:52 UTC Update doc/examples/Lotka_Volterra_Model_Editor/Lotka_Volterra_Model_Editor.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 25 January 2021, 15:31:52 UTC
a8f946d Jakob Vanhoefer 25 January 2021, 15:31:45 UTC Update doc/examples/Lotka_Volterra_Model_Editor/Lotka_Volterra_Model_Editor.ipynb Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 25 January 2021, 15:31:45 UTC
b3bb218 Jakob Vanhoefer 25 January 2021, 15:31:14 UTC Update yaml2sbml/YamlModel.py Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com> 25 January 2021, 15:31:14 UTC
d717cf8 Jakob Vanhoefer 25 January 2021, 11:41:01 UTC over_write -> overwrite 25 January 2021, 11:41:01 UTC
2264e46 Jakob Vanhoefer 25 January 2021, 11:35:07 UTC fix merge conflicts 25 January 2021, 11:35:07 UTC
d7274bc Dilan Pathirana 22 January 2021, 21:36:44 UTC Sorensen example (#63) Co-authored-by: Jakob Vanhoefer <jakob.vanhoefer@uni-bonn.de> 22 January 2021, 21:36:44 UTC
c703ca7 Jakob Vanhoefer 22 January 2021, 17:11:09 UTC change comment 22 January 2021, 17:11:09 UTC
2dc270a Jakob Vanhoefer 22 January 2021, 16:33:31 UTC try version parsing as in pypesto 22 January 2021, 16:33:31 UTC
79be234 Jakob Vanhoefer 18 January 2021, 22:10:18 UTC add new example to example README 18 January 2021, 22:10:18 UTC
aecc3d7 Jakob Vanhoefer 18 January 2021, 22:06:10 UTC add Model Editor Examples notebook 18 January 2021, 22:06:10 UTC
5a2d831 Jakob Vanhoefer 18 January 2021, 22:02:03 UTC fix load model with missing blcok, fixes#61 18 January 2021, 22:02:03 UTC
c93bc68 Jakob Vanhoefer 18 January 2021, 22:00:51 UTC fix time 18 January 2021, 22:00:51 UTC
513b169 Jakob Vanhoefer 17 January 2021, 20:44:09 UTC fix parsing version string 17 January 2021, 20:44:09 UTC
48756d7 Jakob Vanhoefer 17 January 2021, 15:52:29 UTC add __version__ and automated reading in... 17 January 2021, 15:52:29 UTC
1afbc73 Jakob Vanhoefer 16 January 2021, 11:26:09 UTC Merge pull request #48 from yaml2sbml-dev/feature_tests Improve tests (closes #18, #34) 16 January 2021, 11:26:09 UTC
7e5b69c Jakob Vanhoefer 16 January 2021, 10:45:36 UTC redo install test deps 16 January 2021, 10:45:36 UTC
1ce985d Jakob Vanhoefer 16 January 2021, 10:41:09 UTC fix Yanniks review 16 January 2021, 10:41:09 UTC
716e396 Jakob Vanhoefer 15 January 2021, 22:22:11 UTC add nbmake installation 15 January 2021, 22:22:11 UTC
fbaf841 Jakob Vanhoefer 15 January 2021, 22:19:38 UTC add flake8 installation 15 January 2021, 22:19:38 UTC
bf807f1 Jakob Vanhoefer 15 January 2021, 20:15:17 UTC second try chmod 15 January 2021, 20:15:17 UTC
d4eed11 Jakob Vanhoefer 15 January 2021, 20:08:27 UTC change permission shell test scripts 15 January 2021, 20:08:27 UTC
9167a9c Jakob Vanhoefer 15 January 2021, 19:07:49 UTC fix flake8 test command 15 January 2021, 19:07:49 UTC
1cb693d Jakob Vanhoefer 15 January 2021, 18:43:11 UTC change to github workflows 15 January 2021, 18:43:11 UTC
9a23a00 Jakob Vanhoefer 15 January 2021, 18:04:00 UTC Merge pull request #54 from yannikschaelte/master closes #53 Move tests to github actions; add optional amici dependency 15 January 2021, 18:04:00 UTC
aaec8b2 yannikschaelte 15 January 2021, 17:36:31 UTC make cache sys dep 15 January 2021, 17:36:31 UTC
7962112 yannikschaelte 15 January 2021, 17:31:36 UTC mini edit 15 January 2021, 17:31:36 UTC
e733f78 yannikschaelte 15 January 2021, 17:13:51 UTC add badges 15 January 2021, 17:13:51 UTC
b7eef9d yannikschaelte 15 January 2021, 17:09:53 UTC fix 15 January 2021, 17:09:53 UTC
227a1d6 yannikschaelte 15 January 2021, 17:08:46 UTC cache 15 January 2021, 17:08:46 UTC
b2a6406 yannikschaelte 15 January 2021, 17:04:57 UTC make executable 15 January 2021, 17:04:57 UTC
0e55623 yannikschaelte 15 January 2021, 17:04:06 UTC add amici 15 January 2021, 17:04:06 UTC
975917c yannikschaelte 15 January 2021, 16:57:18 UTC fix 15 January 2021, 16:57:18 UTC
4c8049e yannikschaelte 15 January 2021, 16:56:33 UTC fix 15 January 2021, 16:56:33 UTC
f203036 yannikschaelte 15 January 2021, 16:55:41 UTC move to codecov 15 January 2021, 16:55:41 UTC
f681cae yannikschaelte 15 January 2021, 16:45:07 UTC test2 15 January 2021, 16:45:07 UTC
415ae4c yannikschaelte 15 January 2021, 16:43:04 UTC test 15 January 2021, 16:43:04 UTC
57b6b68 yannikschaelte 15 January 2021, 16:37:24 UTC move tests to gh actions 15 January 2021, 16:37:24 UTC
915a25b Jakob Vanhoefer 15 January 2021, 14:06:52 UTC travis install amici/pypesto 15 January 2021, 14:06:52 UTC
7798dc7 Jakob Vanhoefer 15 January 2021, 11:05:44 UTC add test requirements 15 January 2021, 11:05:44 UTC
60589d5 Jakob Vanhoefer 15 January 2021, 10:54:54 UTC add include_package_data=True to setup.py 15 January 2021, 10:54:54 UTC
bed69a4 Jakob Vanhoefer 15 January 2021, 10:49:03 UTC Merge branch 'master' into feature_tests 15 January 2021, 10:49:03 UTC
215b111 Jakob Vanhoefer 15 January 2021, 10:44:57 UTC add MANIFEST 15 January 2021, 10:44:57 UTC
bc92c17 Jakob Vanhoefer 15 January 2021, 10:35:14 UTC Merge branch 'master' into feature_tests 15 January 2021, 10:35:14 UTC
4e67da4 Jakob Vanhoefer 14 January 2021, 22:51:35 UTC Merge pull request #52 from yaml2sbml-dev/feature_validation_in_examples Feature validation in examples closes #51 14 January 2021, 22:51:35 UTC
9086129 Jakob Vanhoefer 14 January 2021, 22:27:03 UTC review comments 14 January 2021, 22:27:03 UTC
d8e79f4 Jakob Vanhoefer 14 January 2021, 20:33:15 UTC add valdiation secion in python Lotka Volterra notebook 14 January 2021, 20:33:15 UTC
e9be8db Jakob Vanhoefer 14 January 2021, 20:22:02 UTC add CLI validation in examples 14 January 2021, 20:22:02 UTC
03347c3 Jakob Vanhoefer 14 January 2021, 20:20:32 UTC remove validation message from yaml2sbml command 14 January 2021, 20:20:32 UTC
1ff8772 Jakob Vanhoefer 14 January 2021, 20:19:11 UTC Merge branch 'master' into feature_validation_in_examples 14 January 2021, 20:19:11 UTC
5ad0cb8 Jakob Vanhoefer 14 January 2021, 20:13:26 UTC change location print 14 January 2021, 20:13:26 UTC
92f37d4 Jakob Vanhoefer 14 January 2021, 10:23:58 UTC Merge pull request #47 from yaml2sbml-dev/feature_CLI_validation add CLI for yaml_validation closes #42 14 January 2021, 10:23:58 UTC
068050b Jakob Vanhoefer 14 January 2021, 09:51:31 UTC Merge pull request #50 from yaml2sbml-dev/feature_no_warnings ignore warning closes #49 14 January 2021, 09:51:31 UTC
8a121f3 Jakob Vanhoefer 12 January 2021, 22:00:28 UTC adapt notebook 12 January 2021, 22:00:28 UTC
06e39ac Jakob Vanhoefer 12 January 2021, 18:32:39 UTC ignore warning 12 January 2021, 18:32:39 UTC
5feec8d Jakob Vanhoefer 12 January 2021, 17:35:36 UTC redo yaml SCHEMA dir 12 January 2021, 17:35:36 UTC
43ed3be Jakob Vanhoefer 12 January 2021, 17:04:24 UTC fix path name 12 January 2021, 17:04:24 UTC
620b9d4 Jakob Vanhoefer 12 January 2021, 17:03:55 UTC fix flake8 12 January 2021, 17:03:55 UTC
eecf8f5 Jakob Vanhoefer 12 January 2021, 16:47:10 UTC fix travis 12 January 2021, 16:47:10 UTC
dd1098e Jakob Vanhoefer 12 January 2021, 16:27:10 UTC add tests for command line + notebooks 12 January 2021, 16:27:10 UTC
1793e0c Jakob Vanhoefer 12 January 2021, 16:26:38 UTC add flags for CLI 12 January 2021, 16:26:38 UTC
17e9d9e Jakob Vanhoefer 12 January 2021, 16:06:54 UTC add help to yaml2sbml CLI 12 January 2021, 16:06:54 UTC
62cdd2b Jakob Vanhoefer 12 January 2021, 12:52:37 UTC add+fix flake8 12 January 2021, 13:02:30 UTC
f1c8fb3 Jakob Vanhoefer 12 January 2021, 12:54:20 UTC Revert "add+fix flake8" This reverts commit e5b429c08a5362f2fc7208990669821b418fb51e. 12 January 2021, 12:54:20 UTC
e5b429c Jakob Vanhoefer 12 January 2021, 12:52:37 UTC add+fix flake8 12 January 2021, 12:52:37 UTC
6cc23ea Jakob Vanhoefer 12 January 2021, 11:02:08 UTC change CLIs name 12 January 2021, 11:02:08 UTC
0c268bc Jakob Vanhoefer 12 January 2021, 10:58:49 UTC add CLI for yaml_validation 12 January 2021, 10:58:49 UTC
6a46299 Jakob Vanhoefer 11 January 2021, 17:59:33 UTC Merge pull request #45 from yaml2sbml-dev/fix_write_yaml improve readability of exported yaml closes #44 11 January 2021, 17:59:33 UTC
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