| 17d9534 | Torsten Seemann | 09 August 2019, 05:14:38 UTC | Bump to 1.14.0 | 09 August 2019, 05:14:38 UTC |
| ee72b53 | Torsten Seemann | 09 August 2019, 05:14:08 UTC | Add BREWCONDA placeholder in each perl script | 09 August 2019, 05:14:08 UTC |
| 85a036c | Torsten Seemann | 09 August 2019, 05:12:03 UTC | Update tbl2asn to 25.7 | 09 August 2019, 05:12:03 UTC |
| 3e7c046 | Torsten Seemann | 18 July 2019, 00:01:58 UTC | Add -c defaults to conda install | 18 July 2019, 00:01:58 UTC |
| 68cf107 | Torsten Seemann | 14 July 2019, 23:14:52 UTC | Reduce length of seq name | 14 July 2019, 23:14:52 UTC |
| 728179f | Torsten Seemann | 29 May 2019, 09:09:42 UTC | Update BLAST+ binaries to 2.9 | 29 May 2019, 09:09:42 UTC |
| 558963e | Torsten Seemann | 29 May 2019, 08:45:38 UTC | Issue #359: random dict order in .txt | 29 May 2019, 08:45:38 UTC |
| 53665ae | Torsten Seemann | 29 May 2019, 08:37:12 UTC | Require BLAST+ >=2.8 for -qcov_hsp_perc | 29 May 2019, 08:37:12 UTC |
| f81a51f | Torsten Seemann | 26 May 2019, 23:05:17 UTC | Issue #387 | Fix --version mismatch | 26 May 2019, 23:05:17 UTC |
| a52a8b0 | Torsten Seemann | 15 April 2019, 22:15:08 UTC | Merge pull request #378 from robymetallo/master Updated grep and regexp to fix bug when detecting parallel version | 15 April 2019, 22:15:08 UTC |
| cf0be46 | Roberto Rossini | 13 April 2019, 22:54:11 UTC | Updated grep and regexp to detect parallel version | 13 April 2019, 22:54:11 UTC |
| 568b7e1 | Torsten Seemann | 17 December 2018, 03:53:43 UTC | Update tbl2asn binaries | 17 December 2018, 03:53:43 UTC |
| 88c99bf | Torsten Seemann | 04 September 2018, 08:17:14 UTC | Fix typo in 'tranposase' doh... | 04 September 2018, 08:17:14 UTC |
| ce71448 | Torsten Seemann | 01 September 2018, 05:23:23 UTC | Issue #333 | add perl5 badge | 01 September 2018, 05:23:23 UTC |
| a09502e | Torsten Seemann | 01 September 2018, 04:33:45 UTC | Issue #258 | add ISFinder/AMR support, custom evalue, --coverage | 01 September 2018, 04:33:45 UTC |
| 76f1371 | Torsten Seemann | 01 September 2018, 01:08:26 UTC | Issue #332 | reinstate CRISPR features, minced 0.3 | 01 September 2018, 01:08:26 UTC |
| 2f93240 | Torsten Seemann | 31 August 2018, 01:38:02 UTC | Issue #328 | COG, it's db_xref not dbxref | 31 August 2018, 01:38:02 UTC |
| be7aef5 | Torsten Seemann | 25 August 2018, 03:57:22 UTC | Issue #328 | remove ilegal score tag for crispr | 25 August 2018, 03:57:22 UTC |
| 099889b | Torsten Seemann | 06 August 2018, 01:17:41 UTC | Add DOI badge for Prokka paper | 06 August 2018, 01:17:41 UTC |
| 9afe26a | Torsten Seemann | 31 May 2018, 03:55:10 UTC | Ensure --dbdir is set before list_db() etc | 31 May 2018, 03:55:10 UTC |
| 36e54ea | Torsten Seemann | 31 May 2018, 03:01:14 UTC | Issue #312 | add --dbdir / $PROKKA_DBDIR | 31 May 2018, 03:01:14 UTC |
| 466ee4f | Torsten Seemann | 31 May 2018, 03:00:51 UTC | Use newer perl on travis | 31 May 2018, 03:00:51 UTC |
| 795abf1 | Torsten Seemann | 28 May 2018, 09:31:25 UTC | Issue #297 | Fix conda-forge / bioconda order | 28 May 2018, 09:31:25 UTC |
| e311f47 | Torsten Seemann | 26 May 2018, 23:34:19 UTC | Fix wrong brew install repo | 26 May 2018, 23:34:19 UTC |
| a8c8fd4 | Torsten Seemann | 26 May 2018, 23:33:41 UTC | Minor typo in comment | 26 May 2018, 23:33:41 UTC |
| 60eb591 | Torsten Seemann | 28 March 2018, 23:52:00 UTC | Fix conda install instructions (Issue #295) | 28 March 2018, 23:52:00 UTC |
| d6adb2c | Torsten Seemann | 27 March 2018, 00:13:00 UTC | Remove broken bundled Perl modules | 27 March 2018, 00:13:00 UTC |
| 545e1ab | Torsten Seemann | 25 March 2018, 06:22:01 UTC | Put module search path before 'use' | 25 March 2018, 06:22:01 UTC |
| 026f742 | Torsten Seemann | 25 March 2018, 05:46:01 UTC | bump to 1.13 | 25 March 2018, 05:46:01 UTC |
| ff2efa6 | Torsten Seemann | 24 March 2018, 04:54:20 UTC | Add GPLv3 info | 24 March 2018, 04:54:20 UTC |
| 7842dd5 | Torsten Seemann | 24 March 2018, 04:49:14 UTC | Add support for COG annotation | 24 March 2018, 04:49:14 UTC |
| 00a3be3 | Torsten Seemann | 24 March 2018, 02:33:08 UTC | Streamline the docs | 24 March 2018, 02:33:08 UTC |
| 151aaca | Torsten Seemann | 05 March 2018, 07:33:25 UTC | Update NCBI binaries | 05 March 2018, 07:33:25 UTC |
| 12547ca | Torsten Seemann | 14 September 2017, 02:51:15 UTC | cleaning up of README markdown | 14 September 2017, 02:51:15 UTC |
| 60bb9f4 | Torsten Seemann | 14 September 2017, 02:44:52 UTC | bug: allow clean_db to return to setup_db | 14 September 2017, 02:44:52 UTC |
| 660b5d1 | Torsten Seemann | 14 September 2017, 02:38:16 UTC | travis: remove apt-gets | 14 September 2017, 02:38:16 UTC |
| adebe6c | Torsten Seemann | 14 September 2017, 02:37:11 UTC | Add exit(0) at end of clean_db() | 14 September 2017, 02:37:11 UTC |
| c46a57f | Torsten Seemann | 14 September 2017, 02:34:42 UTC | Proper error codes and filehandles for --help | 14 September 2017, 02:34:42 UTC |
| ba00dab | Torsten Seemann | 14 September 2017, 02:15:51 UTC | travis: initial attempt | 14 September 2017, 02:15:51 UTC |
| 29269b5 | Torsten Seemann | 14 September 2017, 02:15:27 UTC | Add badges to top of README | 14 September 2017, 02:15:27 UTC |
| f162887 | Torsten Seemann | 14 September 2017, 02:11:20 UTC | Test file to run on | 14 September 2017, 02:11:20 UTC |
| 4cacaa5 | Torsten Seemann | 26 August 2017, 03:00:19 UTC | Fix TSV output bug (Issue #250) | 26 August 2017, 03:00:19 UTC |
| f8f8567 | Torsten Seemann | 24 August 2017, 01:48:09 UTC | Merge pull request #255 from PeteHaitch/patch-1 Fix typo in README | 24 August 2017, 01:48:09 UTC |
| c17bae5 | Peter Hickey | 24 August 2017, 01:44:30 UTC | Typo in README | 24 August 2017, 01:44:30 UTC |
| 224a96b | Torsten Seemann | 06 August 2017, 04:51:10 UTC | Resolve #242 | prokka --docs can't find docs | 06 August 2017, 04:51:10 UTC |
| f7f819b | Torsten Seemann | 04 April 2017, 01:43:06 UTC | Another cleanup_product exception (Issue #226) | 04 April 2017, 01:43:06 UTC |
| 68d9463 | Torsten Seemann | 22 March 2017, 01:52:18 UTC | Put spaces after markdown heading # ## ### #### | 22 March 2017, 01:52:18 UTC |
| cf66d1b | Torsten Seemann | 14 March 2017, 07:14:57 UTC | Bump to version 1.12 | 14 March 2017, 07:14:57 UTC |
| 201c184 | Torsten Seemann | 14 March 2017, 07:01:40 UTC | Add RPMs to help people with bioperl on RPM dists | 14 March 2017, 07:01:40 UTC |
| fcd8f12 | Torsten Seemann | 14 March 2017, 06:21:40 UTC | Check that `java` exists for minced | 14 March 2017, 06:21:40 UTC |
| f525ff3 | Torsten Seemann | 14 March 2017, 06:17:34 UTC | Add git/java to install dependencies | 14 March 2017, 06:17:34 UTC |
| 18c8c5a | Torsten Seemann | 13 March 2017, 05:45:40 UTC | Fix perl warning about # comment in qw() | 13 March 2017, 05:45:40 UTC |
| 57c20ef | Torsten Seemann | 13 March 2017, 05:39:33 UTC | Explain what --rawproduct does (Issue #208) | 13 March 2017, 05:39:33 UTC |
| 91b334f | Torsten Seemann | 13 March 2017, 05:26:41 UTC | Fix typo in issues link in docs (Issue #217) | 13 March 2017, 05:26:41 UTC |
| e3488ec | Torsten Seemann | 13 March 2017, 05:21:34 UTC | Add .tsv output file of features (Issue #223) | 13 March 2017, 05:21:34 UTC |
| 8d302c7 | Torsten Seemann | 05 March 2017, 07:05:32 UTC | Address some of Issue #209 - more CRISPR details | 05 March 2017, 07:05:32 UTC |
| 62ff26f | Torsten Seemann | 05 March 2017, 06:44:36 UTC | Major fix for cleanup_product wrt homolog and N.term (Issue #140) | 05 March 2017, 06:44:36 UTC |
| ef1047c | Torsten Seemann | 05 March 2017, 06:05:02 UTC | Update aragorn binaries 1.2.38 bug fix (Issue #147) | 05 March 2017, 06:05:02 UTC |
| 68fa133 | Torsten Seemann | 05 March 2017, 05:50:20 UTC | Don't remove ISxxxx in cleanup_product (Issue #172) | 05 March 2017, 05:50:20 UTC |
| d7e7d39 | Torsten Seemann | 05 March 2017, 03:37:08 UTC | Issue #201 - warn and skip over missing CDD file | 05 March 2017, 03:37:08 UTC |
| 4f4184f | Torsten Seemann | 05 March 2017, 03:32:53 UTC | Issue #221 - locale problem with barrnap | 05 March 2017, 03:32:53 UTC |
| c46a684 | Torsten Seemann | 05 March 2017, 03:29:22 UTC | Add --accver to put VERSION in Genbank file (not working) | 05 March 2017, 03:29:22 UTC |
| 597af21 | Torsten Seemann | 05 March 2017, 03:17:45 UTC | Update swissprot databases to latest release | 05 March 2017, 03:17:45 UTC |
| 8d0b66f | Torsten Seemann | 04 March 2017, 09:30:45 UTC | Update Bacteria DB to Rfam 12.2 (Issue #207) | 04 March 2017, 09:30:45 UTC |
| e114d05 | Torsten Seemann | 02 March 2017, 06:00:35 UTC | Strip new linux binaries to reduce size | 02 March 2017, 06:00:35 UTC |
| db0d9e5 | Torsten Seemann | 19 February 2017, 02:15:16 UTC | Update Infernal binaries to faster 1.1.2 | 19 February 2017, 02:15:16 UTC |
| 410e7cd | Torsten Seemann | 19 February 2017, 00:28:24 UTC | Merge pull request #216 from blawlor/issue213 Fix for #213: Adding functioning linux binary of tbl2asn (version 25.3) | 19 February 2017, 00:28:24 UTC |
| 70b68d2 | brendan | 18 February 2017, 18:14:17 UTC | Adding functioning version of tbl2asn (version 25.3) to replace previous version which did not work on ubuntu. | 18 February 2017, 18:14:17 UTC |
| cba5ee8 | Torsten Seemann | 18 February 2017, 00:37:29 UTC | Merge branch 'master' of https://github.com/Victorian-Bioinformatics-Consortium/prokka | 18 February 2017, 00:37:29 UTC |
| 806ca1c | Torsten Seemann | 18 February 2017, 00:36:37 UTC | Add missing reference to tbl2asn dependency (Issue #215) | 18 February 2017, 00:36:37 UTC |
| 1caf239 | Torsten Seemann | 10 September 2016, 09:48:11 UTC | Discourage tarball 1.11 installation, prefer HEAD | 10 September 2016, 09:48:11 UTC |
| 460a152 | Torsten Seemann | 25 August 2016, 07:47:35 UTC | Update BLAST+ binaries to 2.4.0 | 25 August 2016, 07:47:35 UTC |
| 310a17f | Torsten Seemann | 25 August 2016, 05:49:57 UTC | Update tbl2asn binaries to version 25.0 | 25 August 2016, 05:49:57 UTC |
| 4bf5747 | Torsten Seemann | 05 June 2016, 08:29:02 UTC | Disable /inference for --proteins and --hmms in --compliant mode (Issue #122) | 05 June 2016, 08:29:02 UTC |
| f61fd31 | Torsten Seemann | 04 June 2016, 02:31:39 UTC | Add Digest::MD5 stuff to docs and cleanup | 04 June 2016, 02:31:39 UTC |
| 6e864a6 | Torsten Seemann | 04 June 2016, 02:23:23 UTC | Merge pull request #148 from peterjc/patch-1 Outline of ENA submission from Prokka | 04 June 2016, 02:23:23 UTC |
| 42cebd6 | Torsten Seemann | 04 June 2016, 02:07:56 UTC | Upgrade prodigal binaries to 2.6.3 (Issue #166) | 04 June 2016, 02:07:56 UTC |
| b59adf4 | Torsten Seemann | 04 June 2016, 01:58:59 UTC | Skip signalp if >10,000 seqs (Issue #158) | 04 June 2016, 01:58:59 UTC |
| b0af252 | Torsten Seemann | 04 June 2016, 01:25:05 UTC | Use Digest::MD5 to ensure mac/linux compatibility re: md5sum (Issue #167) | 04 June 2016, 01:25:05 UTC |
| 92940bc | Torsten Seemann | 02 June 2016, 10:25:08 UTC | Reduce space used in contig ID in compliant mode | 02 June 2016, 10:25:08 UTC |
| dbf9c74 | Torsten Seemann | 02 June 2016, 10:04:49 UTC | Replace illegal | with _ in sequence IDs (Issue #155) | 02 June 2016, 10:05:12 UTC |
| 33ad502 | Torsten Seemann | 02 June 2016, 09:54:58 UTC | Add a conventional message of success (Issue #144) | 02 June 2016, 09:54:58 UTC |
| 3f2f185 | Torsten Seemann | 02 June 2016, 09:50:10 UTC | Autogenerate unique locus tag based on contigs MD5 (Issue #156) | 02 June 2016, 09:50:10 UTC |
| 2b38701 | Torsten Seemann | 02 June 2016, 09:07:30 UTC | Ensure bundled PATH exists before --setupdb called (Issue #160) | 02 June 2016, 09:07:30 UTC |
| 527c0c1 | Torsten Seemann | 02 June 2016, 08:59:48 UTC | Update kingdom BLAST databases to Uniprot May 2016 | 02 June 2016, 08:59:48 UTC |
| 325384b | Torsten Seemann | 02 June 2016, 08:59:07 UTC | Add -hash_index to makeblastdb (unsure if it helps) | 02 June 2016, 08:59:07 UTC |
| 059a793 | Torsten Seemann | 02 June 2016, 03:33:22 UTC | Use Java 1.6 instead of 1.8 for minced.jar bundled (Issue #162) | 02 June 2016, 03:33:22 UTC |
| 5bd0be1 | peterjc | 11 May 2016, 13:18:09 UTC | ENA will want your EMBL flat file gzipped. You will also likely need the MD5 checksum (certainly you will if you use FTP to upload the assembly.embl.gz file). | 11 May 2016, 13:18:09 UTC |
| 550e670 | Peter Cock | 17 December 2015, 11:06:48 UTC | Outline of ENA submission from Prokka Based on the discussion on #145 (Rebased Feb 2016 to use bash markup, and added some whitespace cleaup) | 11 May 2016, 13:14:40 UTC |
| 4abb143 | Torsten Seemann | 11 March 2016, 11:18:34 UTC | Update expired tbl2asn binaries from 24.3 to 24.9 | 11 March 2016, 11:18:34 UTC |
| 44a6576 | Torsten Seemann | 21 February 2016, 01:21:00 UTC | Update tbl2asn to http instead of ftp | 21 February 2016, 01:21:00 UTC |
| 5c20ec6 | Torsten Seemann | 21 February 2016, 01:18:29 UTC | Major update to installation instructions | 21 February 2016, 01:18:29 UTC |
| 2eb538d | Torsten Seemann | 29 November 2015, 06:59:23 UTC | Issue #87 : option --cdsrnaolap to allow tRNA/rRNA overlapping CDS | 29 November 2015, 06:59:23 UTC |
| 56bc27a | Torsten Seemann | 29 November 2015, 06:48:22 UTC | Issue #133 : sig_pep crud ends up in .FFN file | 29 November 2015, 06:48:22 UTC |
| 3fde5ca | Torsten Seemann | 29 November 2015, 06:27:35 UTC | Correctly check for bundled binaries in the 3 locations | 29 November 2015, 06:27:35 UTC |
| 168fa9e | Torsten Seemann | 29 November 2015, 06:09:04 UTC | Update HAMAP.hmm database | 29 November 2015, 06:09:04 UTC |
| b7bbf35 | Torsten Seemann | 29 November 2015, 05:29:37 UTC | Update core BLAST databases to Uniprot Nov-2015 | 29 November 2015, 05:29:37 UTC |
| 259b423 | Torsten Seemann | 28 November 2015, 07:40:35 UTC | Issue #116 : upgrade minced to avoid infinite loop in poly-N | 28 November 2015, 07:40:35 UTC |
| 678801c | Torsten Seemann | 28 November 2015, 07:36:13 UTC | Resolve Issue #110 : option --addmrna to add mRNA features for each CDS | 28 November 2015, 07:36:13 UTC |
| 6be2d8c | Torsten Seemann | 28 November 2015, 07:04:50 UTC | Issue #129 - set phase to empty for non-CDS features | 28 November 2015, 07:04:50 UTC |
