| 7136c26 | Guillaume Jaume | 13 July 2022, 18:56:32 UTC | Merge pull request #32 from histocartography/feature/feat_from_layer/kth Add option to extract features from a specific CNN layer | 13 July 2022, 18:56:32 UTC |
| f48b235 | Kevin Thandiackal | 29 October 2021, 14:35:04 UTC | Permute dimensions before reshaping | 13 July 2022, 17:10:34 UTC |
| 3451428 | Kevin Thandiackal | 27 October 2021, 19:11:18 UTC | Remove unnecessary randomness | 13 July 2022, 17:10:33 UTC |
| 14da612 | Kevin Thandiackal | 21 October 2021, 15:04:25 UTC | Add example for feature extraction from desired layer | 13 July 2022, 17:10:33 UTC |
| dc95100 | Kevin Thandiackal | 20 October 2021, 18:33:02 UTC | Add option to extract features from a desired layer | 13 July 2022, 17:10:27 UTC |
| 7246799 | Pushpak Pati | 24 March 2022, 10:47:08 UTC | Update README.md | 24 March 2022, 10:47:08 UTC |
| 6d8c638 | Pushpak Pati | 24 March 2022, 10:40:55 UTC | Update README.md | 24 March 2022, 10:40:55 UTC |
| ab9f0ec | Guillaume Jaume | 24 January 2022, 13:01:28 UTC | Merge pull request #23 from patricio-astudillo/patch-1 Fix imports: watershed moved from morphology to segmentation of the skimage package. | 24 January 2022, 13:01:28 UTC |
| 378ceca | Patricio Astudillo | 20 January 2022, 16:31:10 UTC | Update nuclei_extraction.py watershed is not a member of morphology (and you also import it a few lines later) | 20 January 2022, 16:31:10 UTC |
| b4e1fb8 | Antonio Foncubierta Rodríguez | 18 January 2022, 09:12:06 UTC | Increase version | 18 January 2022, 09:12:06 UTC |
| 704a943 | Antonio Foncubierta Rodríguez | 29 November 2021, 15:42:40 UTC | Update README.md | 29 November 2021, 15:42:40 UTC |
| 898f1b5 | Guillaume Jaume | 05 November 2021, 12:17:52 UTC | Merge pull request #19 from histocartography/fix/imagenet_normalization/kth Use Imagenet mean & std normalization by default for MaskedGridDeepFeatureExtractor | 05 November 2021, 12:17:52 UTC |
| 68818af | Kevin Thandiackal | 27 October 2021, 19:10:20 UTC | Normalize patches for MaskedGridDeepFeatureExtractor by default w/ ImageNet mean & std | 05 November 2021, 10:55:23 UTC |
| 8132c40 | Pushpak Pati | 02 November 2021, 10:28:28 UTC | Merge pull request #17 from histocartography/feature/masked_features/gja Feature/masked features/gja | 02 November 2021, 10:28:28 UTC |
| 793243b | gja | 01 November 2021, 17:36:41 UTC | fix bug w/ quadrant patch selection | 01 November 2021, 17:36:41 UTC |
| 6941fb1 | gja | 01 November 2021, 17:35:14 UTC | ut for masked instance feat extraction | 01 November 2021, 17:35:14 UTC |
| bf09b03 | guillaumejaume | 01 November 2021, 15:26:20 UTC | wip: instance-level feature masking | 01 November 2021, 15:26:20 UTC |
| 324c140 | guillaumejaume | 01 November 2021, 15:25:59 UTC | Add config file for instance-level feature masking ut | 01 November 2021, 15:25:59 UTC |
| 32440e4 | guillaumejaume | 01 November 2021, 15:25:33 UTC | wip: unit testing instance-level feature masking | 01 November 2021, 15:25:33 UTC |
| 4cc9162 | Guillaume Jaume | 15 October 2021, 11:57:20 UTC | Merge pull request #16 from histocartography/feature/masked_patching/kth Add patch-based feature extractor that works with tissue masks | 15 October 2021, 11:57:20 UTC |
| ff1bcbc | Kevin Thandiackal | 14 October 2021, 11:17:44 UTC | Fix problem when a batch for the feature extractor contains only a single patch | 14 October 2021, 11:17:44 UTC |
| aa2f111 | Kevin Thandiackal | 14 October 2021, 09:13:18 UTC | Simplify constructors | 14 October 2021, 09:13:18 UTC |
| 6fc47b3 | Kevin Thandiackal | 14 October 2021, 08:18:49 UTC | Generate mask outside feature extractor class, rename example file, fix import | 14 October 2021, 08:18:49 UTC |
| f87873f | Kevin Thandiackal | 07 October 2021, 07:49:23 UTC | Add image for unit test; remove redundant data transfer to GPU | 07 October 2021, 07:49:23 UTC |
| 65c25bd | Kevin Thandiackal | 06 October 2021, 19:59:33 UTC | Add unit test for MaskedGridDeepFeatureExtractor | 06 October 2021, 19:59:33 UTC |
| 7b1e6d6 | Kevin Thandiackal | 06 October 2021, 19:58:20 UTC | Return only index filter and patch features (no image patches); convert to pandas DataFrames | 06 October 2021, 19:58:20 UTC |
| 81e9d3d | Kevin Thandiackal | 06 October 2021, 11:18:30 UTC | Add patch-based feature extractor that can process tissue masks | 06 October 2021, 11:18:30 UTC |
| a4abfc2 | Guillaume Jaume | 04 October 2021, 18:30:19 UTC | Merge pull request #15 from histocartography/fix/patch_padding/kth Use correct dimensions for padding | 04 October 2021, 18:30:19 UTC |
| bc5068c | Kevin Thandiackal | 04 October 2021, 17:34:27 UTC | Use correct dimensions for padding | 04 October 2021, 17:34:27 UTC |
| 5a5fff1 | Guillaume Jaume | 28 July 2021, 08:12:39 UTC | Update README.md | 28 July 2021, 08:12:39 UTC |
| 35da563 | Pushpak Pati | 09 July 2021, 22:30:06 UTC | Merge pull request #14 from histocartography/fix/feat_extraction_time/gja Optimize feature extraction based on instance map | 09 July 2021, 22:30:06 UTC |
| ec959a3 | gja | 09 June 2021, 13:57:22 UTC | fix: optimize feature extraction w/ instance map | 09 June 2021, 13:57:22 UTC |
| ab6141e | Antonio Foncubierta Rodríguez | 20 May 2021, 08:22:34 UTC | Update setup.py | 20 May 2021, 08:22:34 UTC |
| e4975c2 | Antonio Foncubierta Rodríguez | 20 May 2021, 08:20:03 UTC | Update setup.py | 20 May 2021, 08:20:03 UTC |
| 06bc671 | Antonio Foncubierta Rodríguez | 20 May 2021, 08:17:22 UTC | Merge pull request #10 from histocartography/feature/model_zoo/gja Feature/model zoo/gja | 20 May 2021, 08:17:22 UTC |
| 6a22f9f | gja | 19 May 2021, 08:16:10 UTC | fix: adapt ut confgi | 19 May 2021, 08:16:10 UTC |
| f6d10f4 | gja | 19 May 2021, 07:43:31 UTC | adapt model zoo | 19 May 2021, 07:43:31 UTC |
| bd54684 | gja | 19 May 2021, 07:43:15 UTC | fix: fix issue in graph norm | 19 May 2021, 07:43:15 UTC |
| daef9a7 | guillaumejaume | 18 May 2021, 11:59:03 UTC | fix: ensure adj is float | 18 May 2021, 11:59:03 UTC |
| 971064c | guillaumejaume | 18 May 2021, 11:58:37 UTC | fix: adapt setting in model zoo | 18 May 2021, 11:58:37 UTC |
| 1964e81 | guillaumejaume | 18 May 2021, 11:58:20 UTC | fix: update config w/ pna settings | 18 May 2021, 11:58:20 UTC |
| f63c8ca | guillaumejaume | 18 May 2021, 11:57:40 UTC | rm 5 class checkpoints | 18 May 2021, 11:57:40 UTC |
| c905af8 | gja | 18 May 2021, 11:00:39 UTC | fix: rm ut for 5 class tg | 18 May 2021, 11:00:39 UTC |
| e7b4702 | gja | 18 May 2021, 11:00:18 UTC | fix: rm ut for 5 class hact | 18 May 2021, 11:00:18 UTC |
| b052e89 | gja | 18 May 2021, 10:59:59 UTC | fix: rm ut for 5 class cg | 18 May 2021, 10:59:59 UTC |
| f5e6b12 | gja | 18 May 2021, 10:59:21 UTC | fix: update model zoo | 18 May 2021, 10:59:21 UTC |
| e3ecab3 | gja | 12 May 2021, 11:50:24 UTC | fix: reverse backward hooks to match forward ones | 12 May 2021, 11:50:24 UTC |
| 550c440 | gja | 10 May 2021, 17:38:34 UTC | fix: ut 24 feats instead of 65 | 10 May 2021, 17:38:34 UTC |
| 253d72c | gja | 10 May 2021, 17:18:59 UTC | fix: set on deg on cuda | 10 May 2021, 17:18:59 UTC |
| e1fb8fb | gja | 10 May 2021, 17:17:32 UTC | feat: optimize concept extraction + refactor | 10 May 2021, 17:17:32 UTC |
| 92363d6 | gja | 10 May 2021, 17:09:51 UTC | fix: add ut w/ all the concepts | 10 May 2021, 17:09:51 UTC |
| b3b8b20 | Guillaume Jaume | 04 May 2021, 11:33:04 UTC | Merge pull request #9 from histocartography/fix/nuclei_bs/gja Fix/nuclei bs/gja | 04 May 2021, 11:33:04 UTC |
| 7cf4978 | guillaumejaume | 28 April 2021, 06:33:17 UTC | Fix: set bs as attr when not none | 28 April 2021, 06:33:17 UTC |
| 7b7f2b4 | guillaumejaume | 28 April 2021, 06:32:38 UTC | Add: ut to test manual bs setting | 28 April 2021, 06:32:38 UTC |
| 68b7c77 | PushpakPati | 21 April 2021, 13:57:43 UTC | Delete 1238_adh_10.png | 21 April 2021, 13:57:43 UTC |
| b1ba85c | PushpakPati | 21 April 2021, 13:56:21 UTC | Add files via upload | 21 April 2021, 13:56:21 UTC |
| 6b601fe | PushpakPati | 21 April 2021, 13:51:03 UTC | Update README.md | 21 April 2021, 13:51:03 UTC |
| 17c6c75 | Antonio Foncubierta Rodriguez | 21 April 2021, 07:48:46 UTC | fix: softer constraints for torch/torchvision | 21 April 2021, 07:48:46 UTC |
| 4b61f7b | Antonio Foncubierta Rodriguez | 20 April 2021, 18:38:29 UTC | loosen torchvision requirement | 20 April 2021, 18:38:29 UTC |
| 87670e7 | Antonio Foncubierta Rodriguez | 20 April 2021, 18:29:50 UTC | updated version number | 20 April 2021, 18:29:50 UTC |
| 9602c0f | Antonio Foncubierta Rodriguez | 20 April 2021, 18:26:35 UTC | updated version number | 20 April 2021, 18:26:35 UTC |
| ea01eb5 | Antonio Foncubierta Rodriguez | 20 April 2021, 18:17:55 UTC | small fix on readme | 20 April 2021, 18:21:12 UTC |
| 327a246 | Antonio Foncubierta Rodriguez | 20 April 2021, 18:15:29 UTC | fix: added requirements | 20 April 2021, 18:15:29 UTC |
| 7fb1b5b | Guillaume Jaume | 20 April 2021, 08:51:42 UTC | Update README.md | 20 April 2021, 08:51:42 UTC |
| 7503a9a | Antonio Foncubierta Rodriguez | 20 April 2021, 08:42:49 UTC | Merge branch 'main' of github.ibm.com:DigitalPathologyZRL/histocartography into main | 20 April 2021, 08:42:49 UTC |
| a034c13 | Antonio Foncubierta Rodriguez | 20 April 2021, 08:41:31 UTC | prepare release 0.1.4 | 20 April 2021, 08:41:31 UTC |
| 419533a | Antonio Foncubierta Rodríguez | 20 April 2021, 08:36:21 UTC | Update .travis.yml | 20 April 2021, 08:36:21 UTC |
| c23c0ae | Antonio Foncubierta | 20 April 2021, 08:35:30 UTC | Update .travis.yml | 20 April 2021, 08:35:30 UTC |
| ee8c5a5 | Antonio Foncubierta | 20 April 2021, 08:31:20 UTC | Update .travis.yml | 20 April 2021, 08:31:20 UTC |
| 63e3db4 | Antonio Foncubierta Rodríguez | 20 April 2021, 08:02:58 UTC | Update README.md | 20 April 2021, 08:02:58 UTC |
| 5a6a352 | Antonio Foncubierta | 20 April 2021, 08:02:29 UTC | Update README.md | 20 April 2021, 08:02:29 UTC |
| ec13179 | Antonio Foncubierta Rodríguez | 20 April 2021, 08:02:00 UTC | Add files via upload | 20 April 2021, 08:02:00 UTC |
| 3e2cf80 | Antonio Foncubierta | 20 April 2021, 07:59:53 UTC | Add files via upload | 20 April 2021, 07:59:53 UTC |
| 847c6aa | Antonio Foncubierta Rodriguez | 20 April 2021, 07:56:01 UTC | logo sync | 20 April 2021, 07:56:01 UTC |
| f6cb286 | Antonio Foncubierta Rodríguez | 20 April 2021, 07:43:08 UTC | Update README.md | 20 April 2021, 07:43:08 UTC |
| 301b936 | Antonio Foncubierta Rodriguez | 20 April 2021, 07:26:35 UTC | fix:add logo to readme | 20 April 2021, 07:26:35 UTC |
| a9e4925 | Antonio Foncubierta Rodriguez | 20 April 2021, 07:19:47 UTC | fix: added logo to Readme | 20 April 2021, 07:19:47 UTC |
| 89f163f | Antonio Foncubierta Rodriguez | 20 April 2021, 07:15:55 UTC | fix: add logos | 20 April 2021, 07:15:55 UTC |
| 5cdab79 | Antonio Foncubierta Rodriguez | 20 April 2021, 07:04:24 UTC | fix:adding large logo logo | 20 April 2021, 07:04:24 UTC |
| 30c1157 | Antonio Foncubierta Rodriguez | 20 April 2021, 07:03:28 UTC | fix:adding small logo | 20 April 2021, 07:03:28 UTC |
| 7a177ac | Antonio Foncubierta Rodríguez | 20 April 2021, 07:00:27 UTC | Merge pull request #7 from histocartography/v0.1.3.branch fix: documentation link | 20 April 2021, 07:00:27 UTC |
| 49bd5fc | Antonio Foncubierta | 20 April 2021, 06:54:34 UTC | V0.1.3.branch (#51) * fix: setup versioning * feat: docs generated * feat: docs generated * fix: documentation link | 20 April 2021, 06:54:34 UTC |
| a6dec23 | Antonio Foncubierta Rodriguez | 19 April 2021, 17:27:03 UTC | fix: documentation link | 19 April 2021, 17:27:03 UTC |
| 70281e8 | Antonio Foncubierta Rodríguez | 19 April 2021, 16:43:20 UTC | Merge pull request #6 from histocartography/v0.1.3.branch Version 0.1.3 PR | 19 April 2021, 16:43:20 UTC |
| 99fab17 | Antonio Foncubierta Rodríguez | 19 April 2021, 16:14:36 UTC | Update .travis.yml | 19 April 2021, 16:14:36 UTC |
| 963a681 | Antonio Foncubierta | 19 April 2021, 14:31:12 UTC | Update .travis.yml | 19 April 2021, 14:31:12 UTC |
| 11ece5e | Antonio Foncubierta | 19 April 2021, 11:57:57 UTC | Update .travis.yml | 19 April 2021, 11:57:57 UTC |
| 5274c67 | Antonio Foncubierta | 19 April 2021, 11:56:05 UTC | Update .travis.yml | 19 April 2021, 11:56:05 UTC |
| 0f586c3 | Antonio Foncubierta Rodriguez | 19 April 2021, 11:36:43 UTC | feat: docs generated | 19 April 2021, 11:48:45 UTC |
| 9a02949 | Antonio Foncubierta Rodriguez | 19 April 2021, 11:36:16 UTC | feat: docs generated | 19 April 2021, 11:48:45 UTC |
| dbaacab | Antonio Foncubierta Rodriguez | 19 April 2021, 09:04:06 UTC | fix: setup versioning | 19 April 2021, 11:48:45 UTC |
| 40dc223 | Antonio Foncubierta | 19 April 2021, 11:47:57 UTC | Create .travis.yml | 19 April 2021, 11:47:57 UTC |
| f9dcf5d | Antonio Foncubierta Rodriguez | 19 April 2021, 11:36:43 UTC | feat: docs generated | 19 April 2021, 11:36:43 UTC |
| 4eb692c | Antonio Foncubierta Rodriguez | 19 April 2021, 11:36:16 UTC | feat: docs generated | 19 April 2021, 11:36:16 UTC |
| 8866bca | Antonio Foncubierta Rodriguez | 19 April 2021, 09:04:06 UTC | fix: setup versioning | 19 April 2021, 09:04:06 UTC |
| 3ab203a | Antonio Foncubierta Rodriguez | 19 April 2021, 07:46:05 UTC | fix: version update | 19 April 2021, 07:46:05 UTC |
| 1e0e0cc | Antonio Foncubierta Rodriguez | 19 April 2021, 07:44:50 UTC | merging v0.1.3 | 19 April 2021, 07:44:50 UTC |
| aaba6cf | Antonio Foncubierta Rodriguez | 19 April 2021, 07:17:37 UTC | chore: license | 19 April 2021, 07:17:37 UTC |
| bd85d1f | Antonio Foncubierta Rodriguez | 19 April 2021, 07:16:00 UTC | Merge branch 'v0.1.3.branch' of github.ibm.com:DigitalPathologyZRL/histocartography into v0.1.3.branch | 19 April 2021, 07:16:00 UTC |
| 33ffe02 | Antonio Foncubierta Rodriguez | 19 April 2021, 07:15:43 UTC | chore: update for packaging | 19 April 2021, 07:15:43 UTC |
