https://github.com/fenderglass/Ragout
Revision 0c5e62d381b402b65b16343d87038d6e88af2b18 authored by fenderglass on 18 November 2013, 13:39:32 UTC, committed by fenderglass on 18 November 2013, 13:39:32 UTC
1 parent 7ff9793
Tip revision: 0c5e62d381b402b65b16343d87038d6e88af2b18 authored by fenderglass on 18 November 2013, 13:39:32 UTC
new example
new example
Tip revision: 0c5e62d
INSTALL.md
Installation instructions for Ragout
====================================
Ragout is written in python and requires version 2.7 to run.
Also, there are third-party dependencies:
* biopython [http://biopython.org]
* networkx [http://networkx.github.io]
You can install them with your OS-specific package manager,
e.g. in Ubuntu:
$ sudo apt-get install python-biopython python-networkx
or using pip package manager:
$ pip install biopython networkx
Ragout can use Sibelia for genomes decomposition on synteny blocks.
"Sibelia" executable should be in your "PATH" environment variable,
otherwise you can edit "SIBELIA_BIN" variable in "ragout.py" file.
If you use Python 2.5 or 2.6, you need to install additional Python
packages:
* argparse [https://pypi.python.org/pypi/argparse]
Computing file changes ...
