https://github.com/AllenInstitute/patchseqtools
Revision 1bc14e759ccad010a5f028d239eb4a446b07e9fc authored by jeremymiller on 30 August 2018, 21:57:30 UTC, committed by jeremymiller on 30 August 2018, 21:57:30 UTC
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Tip revision: 1bc14e759ccad010a5f028d239eb4a446b07e9fc authored by jeremymiller on 30 August 2018, 21:57:30 UTC
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README.md
# patchseqtools
R functions for gene selection and analysis of patch-seq data.
patchseqtools includes many functions that are used for QC and cell typing of patch-seq cells.
Specific topics include:
1) Assigning quality scores to each cell (mostly wrapper functions for https://github.com/PavlidisLab/patchSeqQC)
2) Cell type mapping using tree mapping strategy (to be added later)
3) Cell type clustering using CCA (mostly wrapper functions for https://satijalab.org/seurat/Seurat_AlignmentTutorial.html)
License: What license is it under?
Install using:
```
devtools::install_github("AllenInstitute/patchseqtools",auth_token="802976690281f1483c40de46d0a07e9d01a3de08")
```
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