https://github.com/ctlab/phantasus
Revision 1f6ce2270fff92c30caf7022532c6f9416d00c43 authored by clevermx on 19 October 2021, 09:14:04 UTC, committed by clevermx on 19 October 2021, 09:14:04 UTC
fix loadGEO test with corresponding to new layout add otherOptions of convertByAnnotationDB in documentation
1 parent bf29923
Tip revision: 1f6ce2270fff92c30caf7022532c6f9416d00c43 authored by clevermx on 19 October 2021, 09:14:04 UTC
fixes pass tests:
fixes pass tests:
Tip revision: 1f6ce22
NAMESPACE
# Generated by roxygen2: do not edit by hand
export(generatePreloadedSession)
export(getES)
export(getGDS)
export(getGSE)
export(read.gct)
export(reparseCachedESs)
export(servePhantasus)
export(write.gct)
import(Biobase)
import(GEOquery)
import(Rook)
import(ccaPP)
import(ggplot2)
import(grid)
import(gtable)
import(htmltools)
import(httpuv)
import(jsonlite)
import(limma)
import(opencpu)
import(rhdf5)
import(stats)
import(svglite)
importFrom(AnnotationDbi,columns)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,loadDb)
importFrom(AnnotationDbi,mapIds)
importFrom(AnnotationDbi,species)
importFrom(fgsea,fgseaMultilevel)
importFrom(fgsea,plotEnrichment)
importFrom(ggplot2,ggtitle)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,svg)
importFrom(methods,new)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(utils,download.file)
importFrom(utils,getFromNamespace)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)
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