https://github.com/GPflow/GPflow
Revision 27b07703fdad398c9cf03bdfbf631e80bcfb21f2 authored by st-- on 03 February 2020, 14:00:53 UTC, committed by GitHub on 03 February 2020, 14:00:53 UTC
Makes use of Jupytext to store notebook source in a more readable format, which should make PR reviewing as well as fixing bugs much more straightforward. Also provides a Makefile to regenerate .ipynb from source.

* `make pair-ipynb` was used to create the .pct.py/.md versions off the .ipynb in `develop`.

* `make all` will execute all .pct.py/.md jupytext notebooks to recreate the .ipynb (this may change the figures in notebooks that haven't had numpy/tensorflow random seeds set yet)

* test_notebooks now runs .pct.py/.md in the CI
1 parent 40b2727
Raw File
Tip revision: 27b07703fdad398c9cf03bdfbf631e80bcfb21f2 authored by st-- on 03 February 2020, 14:00:53 UTC
jupytext for notebooks (#1239)
Tip revision: 27b0770
GLOSSARY.md
## Glossary

GPflow does not always follow standard Python naming conventions,
and instead tries to apply the notation in the relevant GP papers.\
The following is the convention we aim to use in the code.

---

<dl>
  <dt>GPR</dt>
  <dd>Gaussian process regression</dd>

  <dt>SVGP</dt>
  <dd>stochastic variational inference for Gaussian process models</dd>

  <dt>Shape constructions [..., A, B]</dt>
  <dd>the way of describing tensor shapes in docstrings and comments. Example: <i>[..., N, D, D]</i>, this is a tensor with an arbitrary number of leading dimensions indicated using the ellipsis sign, and the last two dimensions are equal</dd>

  <dt>X</dt>
  <dd>(and variations like Xnew) refers to input points; always of rank 2, e.g. shape <i>[N, D]</i>, even when <i>D=1</i></dd>

  <dt>Y</dt>
  <dd>(and variations like Ynew) refers to observed output values, potentially with multiple output dimensions; always of rank 2, e.g. shape <i>[N, P]</i>, even when <i>P=1</i></dd>

  <dt>Z</dt>
  <dd>refers to inducing points</dd>

  <dt>M</dt>
  <dd>stands for the number of inducing features (e.g. length of Z)</dd>

  <dt>N</dt>
  <dd>stands for the number of data or minibatch size in docstrings and shape constructions</dd>

  <dt>P</dt>
  <dd>stands for the number of output dimensions in docstrings and shape constructions</dd>

  <dt>D</dt>
  <dd>stands for the number of input dimensions in docstrings and shape constructions</dd>
</dl>
back to top