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https://github.com/caley/OpenEPSim
22 December 2018, 03:01:04 UTC
Revision 28c0d6270bfd2b99845492565fe2907418ae74c6 authored by Caley Finn on 05 March 2018, 04:10:53 UTC, committed by Caley Finn on 05 March 2018, 04:10:53 UTC 
Build jar with all dependencies
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Tip revision: 28c0d6270bfd2b99845492565fe2907418ae74c6 authored by Caley Finn on 05 March 2018, 04:10:53 UTC
Build jar with all dependencies
Tip revision: 28c0d62
README.md 
# latticesim
General simulation code for ASEP like models on 1D lattices.

## Very brief instructions
Download the jars for [gson](https://github.com/google/gson) and [Apache Common Maths](http://commons.apache.org/proper/commons-math/) and update env.sh to point to them.

Now compiles with [Maven](https://maven.apache.org/)
```
mvn compile
```

To run the ASEP simulation from the samples folder
```
./run.sh < samples/asep.json > asep.out.json
```

Python script to plot resulting density profiles (uses matplotlib)
```
python plotdensity.py asep.out.json
```
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