https://github.com/geodynamics/citcoms
Revision 304266d8447efe5ee990624f615b250c633079ef authored by Leif Strand on 14 February 2006, 23:27:17 UTC, committed by Leif Strand on 14 February 2006, 23:27:17 UTC
1 parent 5063926
Tip revision: 304266d8447efe5ee990624f615b250c633079ef authored by Leif Strand on 14 February 2006, 23:27:17 UTC
Merged r2605, "Updated NEWS and ChangeLog".
Merged r2605, "Updated NEWS and ChangeLog".
Tip revision: 304266d
ChangeLog
2006-02-04 02:11 luis
* doc/manual/citcoms_book.xml: Fixed about 20 assorted typos.
2006-02-04 00:18 luis
* lib/Regional/Version_dependent.c: Eliminated the unused local
variables lx,ly,lz in global_derived_values().
2006-02-04 00:15 luis
* lib/Full/Version_dependent.c: The value of max_size needs to be
larger by 1, or else we access out-of-bound array elements in
the arrays E->boundary.element and E->boundary.normal. Refer to
issue10 in roundup for more details.
2006-02-04 00:11 luis
* lib/Common/global_defs.h: Adjusted size of arrays in struct
Shape_function_dA. This fixes a bug involving out-of-bounds
array access caused by use of fortran-style indexing. Refer to
issue10 in roundup for more information.
2006-02-04 00:04 luis
* lib/Common/Citcom_init.c: Need to initialize to zero the
following variables * E->control.total_iteration_cycles *
E->control.total_v_solver_calls
2006-01-31 23:16 leif
* pyre/Components/Launchers.py: Merged r2575 (fix for issue9,
"need a property for extra LSF options") from v2 branch to trunk.
2006-01-31 20:23 leif
* pyre/Components/Launchers.py: Merged r2573 (fix for issue8,
"eliminate CitcomS default time limit for batch jobs") from v2
branch to trunk.
2006-01-31 02:54 leif
* configure.ac, etc/Makefile.am, pyre/Makefile.am,
tests/Makefile.am, tests/citcomsfull.sh.in,
tests/citcomsregional.sh.in, tests/coupledcitcoms.sh.in: Merged
r2565 (fix for issue11, "broken install when 'pkgpyexecdir' is
distinct from 'pkgpythondir'") from v2 branch to trunk.
2006-01-31 00:07 leif
* configure.ac: Merged r2563 (fix for issue7, "CitcomS check_CXX
check is broken") from v2 branch to trunk.
2005-11-17 19:14 luis
* examples/Cookbook2/cookbook2.sh: Corrected typo. Should be:
--solver.bc.topvbyval=0
2005-11-17 00:35 luis
* doc/manual/citcoms_book.xml: boundition --> boundary condition
2005-11-16 02:23 leif
* pyre/Components/IC.py: Fixed a bug which Luis found
("--solver.ic.help-properties"): bad default values for
blob_radius and blob_dT.
2005-11-09 18:53 leif
* doc/manual/citcoms_book.xml: Regenerated PDF.
2005-11-09 12:15 luis
* doc/manual/citcoms_book.xml: Fixed example 5.6 in Cookbook 5
2005-11-09 11:45 luis
* doc/manual/citcoms_book.xml: Fixed a few more typos.
2005-11-09 11:31 luis
* doc/manual/citcoms_book.xml: Missed a stray =
2005-11-09 11:20 luis
* doc/manual/citcoms_book.xml: Corrected several typos and
mispelling errors.
2005-11-04 19:39 leif
* doc/manual/citcoms_book.xml: Regenerated PDF: updated date;
minor corrections, format tweaks.
2005-11-03 00:26 tan2
* doc/manual/citcoms_book.xml: fixed a bug in closing <filename>
tag
2005-11-01 01:10 tan2
* doc/manual/citcoms_book.xml: changes in Chapter 4
(post-processing) and Appendix C (output format)
2005-10-29 02:16 leif
* mc/3D/CitcomS/branches/v2/examples/Cookbook1/cookbook1.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook2/cookbook2.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook3/cookbook3.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook4/cookbook4.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook5/cookbook5.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook7/cookbook7.sh,
mc/3D/CitcomS/branches/v2/examples/example1.sh,
mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook1/cookbook1.sh,
mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook2/cookbook2.sh,
mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook3/cookbook3.sh,
mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook4/cookbook4.sh,
mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook5/cookbook5.sh,
mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook7/cookbook7.sh,
mc/3D/CitcomS/tags/v2.0.1/examples/example1.sh,
examples/Cookbook1/cookbook1.sh,
examples/Cookbook2/cookbook2.sh: Set svn:executable on all
examples and cookbooks.
2005-10-29 02:07 leif
* doc/manual/citcoms_book.xml: Numerous minor corrections and
format tweaks.
2005-10-28 22:58 leif
* doc/manual/citcoms_book.xml: Minor corrections to Chapter 3,
"Running CitComS.py", and a major update to Chapter 4,
"Postprocessing and Graphics" (which still contained references
to the "regcitcom input file").
2005-10-28 20:06 leif
* doc/manual/citcoms_book.xml: Minor updates to Chapter 2 -- in
particular, removed reference to the separate, sync'd Pythia
repository. Also, removed reference to the Python installer.
2005-10-28 19:45 leif
* doc/manual, doc/manual/citcoms_book.xml,
doc/manual/citcoms_cover.pdf, doc/manual/graphics.tar.gz: Added
DocBook manual files from Cassie.
2005-10-21 19:35 leif
* mc/3D/CitcomS/branches/v2/examples/Cookbook1/cookbook1.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook2/cookbook2.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook3/cookbook3.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook4/cookbook4.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook5/cookbook5.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook7/cookbook7.sh,
mc/3D/CitcomS/branches/v2/examples/example1.sh,
mc/3D/CitcomS/branches/v2/visual/Makefile.am,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSFullImport.net,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSFullImport.net.in,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSImport.net,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSImport.net.in,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceHeatflux.net,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceHeatflux.net.in,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceImport.net,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceImport.net.in,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceTopo.net,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceTopo.net.in,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceVelocity.net,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceVelocity.net.in,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSTemperature.net,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSTemperature.net.in,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSVelocity.net,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSVelocity.net.in,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSViscosity.net,
mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSViscosity.net.in,
mc/3D/CitcomS/branches/v2/visual/visFull.net,
mc/3D/CitcomS/branches/v2/visual/visFull.net.in,
mc/3D/CitcomS/branches/v2/visual/visRegional.net,
mc/3D/CitcomS/branches/v2/visual/visRegional.net.in,
mc/3D/CitcomS/branches/v2/visual/visRegionalSurface.net,
mc/3D/CitcomS/branches/v2/visual/visRegionalSurface.net.in,
examples/Cookbook1/cookbook1.sh,
examples/Cookbook2/cookbook2.sh,
examples/Cookbook3/cookbook3.sh,
examples/Cookbook4/cookbook4.sh,
examples/Cookbook5/cookbook5.sh,
examples/Cookbook7/cookbook7.sh, examples/example1.sh,
visual/Makefile.am, visual/OpenDXMacro/CitcomSFullImport.net,
visual/OpenDXMacro/CitcomSFullImport.net.in,
visual/OpenDXMacro/CitcomSImport.net,
visual/OpenDXMacro/CitcomSImport.net.in,
visual/OpenDXMacro/CitcomSSurfaceHeatflux.net,
visual/OpenDXMacro/CitcomSSurfaceHeatflux.net.in,
visual/OpenDXMacro/CitcomSSurfaceImport.net,
visual/OpenDXMacro/CitcomSSurfaceImport.net.in,
visual/OpenDXMacro/CitcomSSurfaceTopo.net,
visual/OpenDXMacro/CitcomSSurfaceTopo.net.in,
visual/OpenDXMacro/CitcomSSurfaceVelocity.net,
visual/OpenDXMacro/CitcomSSurfaceVelocity.net.in,
visual/OpenDXMacro/CitcomSTemperature.net,
visual/OpenDXMacro/CitcomSTemperature.net.in,
visual/OpenDXMacro/CitcomSVelocity.net,
visual/OpenDXMacro/CitcomSVelocity.net.in,
visual/OpenDXMacro/CitcomSViscosity.net,
visual/OpenDXMacro/CitcomSViscosity.net.in, visual/visFull.net,
visual/visFull.net.in, visual/visRegional.net,
visual/visRegional.net.in, visual/visRegionalSurface.net,
visual/visRegionalSurface.net.in: Merged revision 2466 from
CitcomS v2.0.1 to v2 branch and trunk.
2005-10-07 12:37 leif
* mc/3D/CitcomS/branches/v2/pyre/Solver/FullSolver.py,
mc/3D/CitcomS/branches/v2/pyre/Solver/RegionalSolver.py,
pyre/Solver/FullSolver.py, pyre/Solver/RegionalSolver.py: Don't
suppress errors loading Full/Regional module.
2005-10-04 23:58 tan2
* visual/dxgeneralsurf.sh, visual/pasteCitcomData.sh: changed the
argument style of 'head'/'tail' command to conform with the
standard
2005-10-04 23:56 tan2
* visual/dxgeneral.sh: changed 'head -1' to 'head -n 1' to conform
with the standard
2005-10-04 22:37 leif
* mc/3D/CitcomS/branches/v2/Make.mm,
mc/3D/CitcomS/branches/v2/Makefile.am,
mc/3D/CitcomS/branches/v2/configure.ac,
mc/3D/CitcomS/branches/v2/drivers/Citcom.c,
mc/3D/CitcomS/branches/v2/drivers/Full/Make.mm,
mc/3D/CitcomS/branches/v2/drivers/Full/local.def,
mc/3D/CitcomS/branches/v2/drivers/Make.mm,
mc/3D/CitcomS/branches/v2/drivers/Makefile.am,
mc/3D/CitcomS/branches/v2/drivers/Regional/Make.mm,
mc/3D/CitcomS/branches/v2/drivers/Regional/local.def,
mc/3D/CitcomS/branches/v2/drivers/local.def,
mc/3D/CitcomS/branches/v2/etc/Make.mm,
mc/3D/CitcomS/branches/v2/etc/Makefile.am,
mc/3D/CitcomS/branches/v2/etc/__vault__.odb,
mc/3D/CitcomS/branches/v2/etc/full-sphere.odb,
mc/3D/CitcomS/branches/v2/etc/full.odb,
mc/3D/CitcomS/branches/v2/etc/globus.odb,
mc/3D/CitcomS/branches/v2/etc/incomp-newtonian.odb,
mc/3D/CitcomS/branches/v2/etc/incomp-non-newtonian.odb,
mc/3D/CitcomS/branches/v2/etc/lam-mpi.odb,
mc/3D/CitcomS/branches/v2/etc/lsf.odb,
mc/3D/CitcomS/branches/v2/etc/mpich.odb,
mc/3D/CitcomS/branches/v2/etc/pbs.odb,
mc/3D/CitcomS/branches/v2/etc/regional-sphere.odb,
mc/3D/CitcomS/branches/v2/etc/regional.odb,
mc/3D/CitcomS/branches/v2/etc/temp.odb,
mc/3D/CitcomS/branches/v2/examples/Cookbook1/cookbook1.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook2/cookbook2.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook3/cookbook3.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook4/cookbook4.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook5/cookbook5.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook7/cookbook7.sh,
mc/3D/CitcomS/branches/v2/examples/Makefile.am,
mc/3D/CitcomS/branches/v2/examples/example1.sh,
mc/3D/CitcomS/branches/v2/lib/Common/Advection_diffusion.c,
mc/3D/CitcomS/branches/v2/lib/Common/Citcom_init.c,
mc/3D/CitcomS/branches/v2/lib/Common/Construct_arrays.c,
mc/3D/CitcomS/branches/v2/lib/Common/Convection.c,
mc/3D/CitcomS/branches/v2/lib/Common/Drive_solvers.c,
mc/3D/CitcomS/branches/v2/lib/Common/Element_calculations.c,
mc/3D/CitcomS/branches/v2/lib/Common/General_matrix_functions.c,
mc/3D/CitcomS/branches/v2/lib/Common/Global_operations.c,
mc/3D/CitcomS/branches/v2/lib/Common/Initial_temperature.c,
mc/3D/CitcomS/branches/v2/lib/Common/Instructions.c,
mc/3D/CitcomS/branches/v2/lib/Common/Interuption.c,
mc/3D/CitcomS/branches/v2/lib/Common/Make.mm,
mc/3D/CitcomS/branches/v2/lib/Common/Makefile.am,
mc/3D/CitcomS/branches/v2/lib/Common/Nodal_mesh.c,
mc/3D/CitcomS/branches/v2/lib/Common/Obsolete.c,
mc/3D/CitcomS/branches/v2/lib/Common/Output.c,
mc/3D/CitcomS/branches/v2/lib/Common/Pan_problem_misc_functions.c,
mc/3D/CitcomS/branches/v2/lib/Common/Parsing.c,
mc/3D/CitcomS/branches/v2/lib/Common/Phase_change.c,
mc/3D/CitcomS/branches/v2/lib/Common/Problem_related.c,
mc/3D/CitcomS/branches/v2/lib/Common/Process_buoyancy.c,
mc/3D/CitcomS/branches/v2/lib/Common/Shape_functions.c,
mc/3D/CitcomS/branches/v2/lib/Common/Size_does_matter.c,
mc/3D/CitcomS/branches/v2/lib/Common/Solver_conj_grad.c,
mc/3D/CitcomS/branches/v2/lib/Common/Solver_multigrid.c,
mc/3D/CitcomS/branches/v2/lib/Common/Sphere_harmonics.c,
mc/3D/CitcomS/branches/v2/lib/Common/Stokes_flow_Incomp.c,
mc/3D/CitcomS/branches/v2/lib/Common/Topo_gravity.c,
mc/3D/CitcomS/branches/v2/lib/Common/Tracer_advection.c,
mc/3D/CitcomS/branches/v2/lib/Common/Viscosity_structures.c,
mc/3D/CitcomS/branches/v2/lib/Common/advection.h,
mc/3D/CitcomS/branches/v2/lib/Common/advection_diffusion.h,
mc/3D/CitcomS/branches/v2/lib/Common/citcom_init.h,
mc/3D/CitcomS/branches/v2/lib/Common/convection_variables.h,
mc/3D/CitcomS/branches/v2/lib/Common/drive_solvers.h,
mc/3D/CitcomS/branches/v2/lib/Common/element_definitions.h,
mc/3D/CitcomS/branches/v2/lib/Common/global_defs.h,
mc/3D/CitcomS/branches/v2/lib/Common/initial_temperature.h,
mc/3D/CitcomS/branches/v2/lib/Common/interuption.h,
mc/3D/CitcomS/branches/v2/lib/Common/lith_age.h,
mc/3D/CitcomS/branches/v2/lib/Common/local.def,
mc/3D/CitcomS/branches/v2/lib/Common/output.h,
mc/3D/CitcomS/branches/v2/lib/Common/parallel_related.h,
mc/3D/CitcomS/branches/v2/lib/Common/parsing.h,
mc/3D/CitcomS/branches/v2/lib/Common/phase_change.h,
mc/3D/CitcomS/branches/v2/lib/Common/sphere_communication.h,
mc/3D/CitcomS/branches/v2/lib/Common/temperature_descriptions.h,
mc/3D/CitcomS/branches/v2/lib/Common/tracer_defs.h,
mc/3D/CitcomS/branches/v2/lib/Common/viscosity_descriptions.h,
mc/3D/CitcomS/branches/v2/lib/Full/Boundary_conditions.c,
mc/3D/CitcomS/branches/v2/lib/Full/Geometry_cartesian.c,
mc/3D/CitcomS/branches/v2/lib/Full/Lith_age.c,
mc/3D/CitcomS/branches/v2/lib/Full/Make.mm,
mc/3D/CitcomS/branches/v2/lib/Full/Makefile.am,
mc/3D/CitcomS/branches/v2/lib/Full/Obsolete.c,
mc/3D/CitcomS/branches/v2/lib/Full/Parallel_related.c,
mc/3D/CitcomS/branches/v2/lib/Full/Read_input_from_files.c,
mc/3D/CitcomS/branches/v2/lib/Full/Sphere_related.c,
mc/3D/CitcomS/branches/v2/lib/Full/Version_dependent.c,
mc/3D/CitcomS/branches/v2/lib/Full/local.def,
mc/3D/CitcomS/branches/v2/lib/Make.mm,
mc/3D/CitcomS/branches/v2/lib/Makefile.am,
mc/3D/CitcomS/branches/v2/lib/Regional/Boundary_conditions.c,
mc/3D/CitcomS/branches/v2/lib/Regional/Geometry_cartesian.c,
mc/3D/CitcomS/branches/v2/lib/Regional/Lith_age.c,
mc/3D/CitcomS/branches/v2/lib/Regional/Make.mm,
mc/3D/CitcomS/branches/v2/lib/Regional/Makefile.am,
mc/3D/CitcomS/branches/v2/lib/Regional/Obsolete.c,
mc/3D/CitcomS/branches/v2/lib/Regional/Parallel_related.c,
mc/3D/CitcomS/branches/v2/lib/Regional/Read_input_from_files.c,
mc/3D/CitcomS/branches/v2/lib/Regional/Sphere_related.c,
mc/3D/CitcomS/branches/v2/lib/Regional/Version_dependent.c,
mc/3D/CitcomS/branches/v2/lib/Regional/local.def,
mc/3D/CitcomS/branches/v2/lib/local.def,
mc/3D/CitcomS/branches/v2/local.def,
mc/3D/CitcomS/branches/v2/module/Full/Fullmodule.cc,
mc/3D/CitcomS/branches/v2/module/Full/Make.mm,
mc/3D/CitcomS/branches/v2/module/Full/Makefile.am,
mc/3D/CitcomS/branches/v2/module/Full/local.def,
mc/3D/CitcomS/branches/v2/module/Make.mm,
mc/3D/CitcomS/branches/v2/module/Makefile.am,
mc/3D/CitcomS/branches/v2/module/Regional/Make.mm,
mc/3D/CitcomS/branches/v2/module/Regional/Makefile.am,
mc/3D/CitcomS/branches/v2/module/Regional/Regionalmodule.cc,
mc/3D/CitcomS/branches/v2/module/Regional/advdiffu.cc,
mc/3D/CitcomS/branches/v2/module/Regional/advdiffu.h,
mc/3D/CitcomS/branches/v2/module/Regional/bindings.cc,
mc/3D/CitcomS/branches/v2/module/Regional/bindings.h,
mc/3D/CitcomS/branches/v2/module/Regional/exceptions.cc,
mc/3D/CitcomS/branches/v2/module/Regional/exceptions.h,
mc/3D/CitcomS/branches/v2/module/Regional/initial_conditions.cc,
mc/3D/CitcomS/branches/v2/module/Regional/initial_conditions.h,
mc/3D/CitcomS/branches/v2/module/Regional/local.def,
mc/3D/CitcomS/branches/v2/module/Regional/mesher.cc,
mc/3D/CitcomS/branches/v2/module/Regional/mesher.h,
mc/3D/CitcomS/branches/v2/module/Regional/misc.cc,
mc/3D/CitcomS/branches/v2/module/Regional/misc.h,
mc/3D/CitcomS/branches/v2/module/Regional/outputs.cc,
mc/3D/CitcomS/branches/v2/module/Regional/outputs.h,
mc/3D/CitcomS/branches/v2/module/Regional/setProperties.cc,
mc/3D/CitcomS/branches/v2/module/Regional/setProperties.h,
mc/3D/CitcomS/branches/v2/module/Regional/stokes_solver.cc,
mc/3D/CitcomS/branches/v2/module/Regional/stokes_solver.h,
mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/Advection_diffusion.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/Components/BC.py,
mc/3D/CitcomS/branches/v2/pyre/Components/CitcomComponent.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Const.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/CoarseGridExchanger.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Exchanger.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/FineGridExchanger.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Inlet.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Outlet.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/Components/IC.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Launchers.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Components/Param.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Phase.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/FullSphere.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/RegionalSphere.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/Sphere.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/Incompressible.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Tracer.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Visc.py,
mc/3D/CitcomS/branches/v2/pyre/Components/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/Controller.py,
mc/3D/CitcomS/branches/v2/pyre/CoupledApp.py,
mc/3D/CitcomS/branches/v2/pyre/Coupler.py,
mc/3D/CitcomS/branches/v2/pyre/Layout.py,
mc/3D/CitcomS/branches/v2/pyre/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Makefile.am,
mc/3D/CitcomS/branches/v2/pyre/SimpleApp.py,
mc/3D/CitcomS/branches/v2/pyre/Solver/FullSolver.py,
mc/3D/CitcomS/branches/v2/pyre/Solver/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Solver/RegionalSolver.py,
mc/3D/CitcomS/branches/v2/pyre/Solver/Solver.py,
mc/3D/CitcomS/branches/v2/pyre/Solver/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/__init__.py.in,
mc/3D/CitcomS/branches/v2/pyre/local.def,
mc/3D/CitcomS/branches/v2/tests/Make.mm,
mc/3D/CitcomS/branches/v2/tests/Makefile.am,
mc/3D/CitcomS/branches/v2/tests/asap.py,
mc/3D/CitcomS/branches/v2/tests/citcomsfull.sh.in,
mc/3D/CitcomS/branches/v2/tests/citcomsregional.sh.in,
mc/3D/CitcomS/branches/v2/tests/hrothgar.py,
mc/3D/CitcomS/branches/v2/tests/local.def,
mc/3D/CitcomS/branches/v2/tests/signon.py,
mc/3D/CitcomS/branches/v2/visual/Make.mm,
mc/3D/CitcomS/branches/v2/visual/Makefile.am,
mc/3D/CitcomS/branches/v2/visual/autocombine.py,
mc/3D/CitcomS/branches/v2/visual/batchcombine.py,
mc/3D/CitcomS/branches/v2/visual/batchpaste.sh,
mc/3D/CitcomS/branches/v2/visual/batchsurf.py,
mc/3D/CitcomS/branches/v2/visual/combine.py,
mc/3D/CitcomS/branches/v2/visual/combinesurf.py,
mc/3D/CitcomS/branches/v2/visual/dxgeneral.sh,
mc/3D/CitcomS/branches/v2/visual/dxgeneralsurf.sh,
mc/3D/CitcomS/branches/v2/visual/getcoord.sh,
mc/3D/CitcomS/branches/v2/visual/getlog.sh,
mc/3D/CitcomS/branches/v2/visual/getsurf.sh,
mc/3D/CitcomS/branches/v2/visual/parser.py,
mc/3D/CitcomS/branches/v2/visual/pasteCitcomData.sh,
mc/3D/CitcomS/branches/v2/visual/zslice.py, Make.mm,
Makefile.am, configure.ac, drivers/Citcom.c,
drivers/Full/Make.mm, drivers/Full/local.def, drivers/Make.mm,
drivers/Makefile.am, drivers/Regional/Make.mm,
drivers/Regional/local.def, drivers/local.def, etc/Make.mm,
etc/Makefile.am, etc/__vault__.odb, etc/full-sphere.odb,
etc/full.odb, etc/globus.odb, etc/incomp-newtonian.odb,
etc/incomp-non-newtonian.odb, etc/lam-mpi.odb, etc/lsf.odb,
etc/mpich.odb, etc/pbs.odb, etc/regional-sphere.odb,
etc/regional.odb, etc/temp.odb, examples/Cookbook1/cookbook1.sh,
examples/Cookbook2/cookbook2.sh,
examples/Cookbook3/cookbook3.sh,
examples/Cookbook4/cookbook4.sh,
examples/Cookbook5/cookbook5.sh,
examples/Cookbook7/cookbook7.sh, examples/Makefile.am,
examples/example1.sh, lib/Common/Advection_diffusion.c,
lib/Common/Citcom_init.c, lib/Common/Construct_arrays.c,
lib/Common/Convection.c, lib/Common/Drive_solvers.c,
lib/Common/Element_calculations.c,
lib/Common/General_matrix_functions.c,
lib/Common/Global_operations.c,
lib/Common/Initial_temperature.c, lib/Common/Instructions.c,
lib/Common/Interuption.c, lib/Common/Make.mm,
lib/Common/Makefile.am, lib/Common/Nodal_mesh.c,
lib/Common/Obsolete.c, lib/Common/Output.c,
lib/Common/Pan_problem_misc_functions.c, lib/Common/Parsing.c,
lib/Common/Phase_change.c, lib/Common/Problem_related.c,
lib/Common/Process_buoyancy.c, lib/Common/Shape_functions.c,
lib/Common/Size_does_matter.c, lib/Common/Solver_conj_grad.c,
lib/Common/Solver_multigrid.c, lib/Common/Sphere_harmonics.c,
lib/Common/Stokes_flow_Incomp.c, lib/Common/Topo_gravity.c,
lib/Common/Tracer_advection.c,
lib/Common/Viscosity_structures.c, lib/Common/advection.h,
lib/Common/advection_diffusion.h, lib/Common/citcom_init.h,
lib/Common/convection_variables.h, lib/Common/drive_solvers.h,
lib/Common/element_definitions.h, lib/Common/global_defs.h,
lib/Common/initial_temperature.h, lib/Common/interuption.h,
lib/Common/lith_age.h, lib/Common/local.def,
lib/Common/output.h, lib/Common/parallel_related.h,
lib/Common/parsing.h, lib/Common/phase_change.h,
lib/Common/sphere_communication.h,
lib/Common/temperature_descriptions.h, lib/Common/tracer_defs.h,
lib/Common/viscosity_descriptions.h,
lib/Full/Boundary_conditions.c, lib/Full/Geometry_cartesian.c,
lib/Full/Lith_age.c, lib/Full/Make.mm, lib/Full/Makefile.am,
lib/Full/Obsolete.c, lib/Full/Parallel_related.c,
lib/Full/Read_input_from_files.c, lib/Full/Sphere_related.c,
lib/Full/Version_dependent.c, lib/Full/local.def, lib/Make.mm,
lib/Makefile.am, lib/Regional/Boundary_conditions.c,
lib/Regional/Geometry_cartesian.c, lib/Regional/Lith_age.c,
lib/Regional/Make.mm, lib/Regional/Makefile.am,
lib/Regional/Obsolete.c, lib/Regional/Parallel_related.c,
lib/Regional/Read_input_from_files.c,
lib/Regional/Sphere_related.c, lib/Regional/Version_dependent.c,
lib/Regional/local.def, lib/local.def, local.def,
module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/AreaWeightedNormal.h,
module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/BoundaryVTInlet.cc,
module/Exchanger/BoundaryVTInlet.h,
module/Exchanger/CitcomInterpolator.cc,
module/Exchanger/CitcomInterpolator.h,
module/Exchanger/CitcomSource.cc,
module/Exchanger/CitcomSource.h, module/Exchanger/Convertor.cc,
module/Exchanger/Convertor.h,
module/Exchanger/Exchangermodule.cc,
module/Exchanger/Interior.cc, module/Exchanger/Interior.h,
module/Exchanger/Make.mm, module/Exchanger/Makefile.am,
module/Exchanger/SIUnit.cc, module/Exchanger/SIUnit.h,
module/Exchanger/SInlet.cc, module/Exchanger/SInlet.h,
module/Exchanger/SVTInlet.cc, module/Exchanger/SVTInlet.h,
module/Exchanger/SVTOutlet.cc, module/Exchanger/SVTOutlet.h,
module/Exchanger/TInlet.cc, module/Exchanger/TInlet.h,
module/Exchanger/TOutlet.cc, module/Exchanger/TOutlet.h,
module/Exchanger/VOutlet.cc, module/Exchanger/VOutlet.h,
module/Exchanger/VTInlet.cc, module/Exchanger/VTInlet.h,
module/Exchanger/VTOutlet.cc, module/Exchanger/VTOutlet.h,
module/Exchanger/bindings.cc, module/Exchanger/bindings.h,
module/Exchanger/exceptions.cc, module/Exchanger/exceptions.h,
module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h,
module/Exchanger/global_bbox.cc, module/Exchanger/global_bbox.h,
module/Exchanger/initTemperature.cc,
module/Exchanger/initTemperature.h,
module/Exchanger/inlets_outlets.cc,
module/Exchanger/inlets_outlets.h, module/Exchanger/misc.cc,
module/Exchanger/misc.h, module/Full/Fullmodule.cc,
module/Full/Make.mm, module/Full/Makefile.am,
module/Full/local.def, module/Make.mm, module/Makefile.am,
module/Regional/Make.mm, module/Regional/Makefile.am,
module/Regional/Regionalmodule.cc, module/Regional/advdiffu.cc,
module/Regional/advdiffu.h, module/Regional/bindings.cc,
module/Regional/bindings.h, module/Regional/exceptions.cc,
module/Regional/exceptions.h,
module/Regional/initial_conditions.cc,
module/Regional/initial_conditions.h, module/Regional/local.def,
module/Regional/mesher.cc, module/Regional/mesher.h,
module/Regional/misc.cc, module/Regional/misc.h,
module/Regional/outputs.cc, module/Regional/outputs.h,
module/Regional/setProperties.cc,
module/Regional/setProperties.h,
module/Regional/stokes_solver.cc,
module/Regional/stokes_solver.h,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Advection_diffusion/Make.mm,
pyre/Components/Advection_diffusion/__init__.py,
pyre/Components/BC.py, pyre/Components/CitcomComponent.py,
pyre/Components/Const.py,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
pyre/Components/Exchanger/Inlet.py,
pyre/Components/Exchanger/Make.mm,
pyre/Components/Exchanger/Outlet.py,
pyre/Components/Exchanger/__init__.py, pyre/Components/IC.py,
pyre/Components/Launchers.py, pyre/Components/Make.mm,
pyre/Components/Param.py, pyre/Components/Phase.py,
pyre/Components/Sphere/FullSphere.py,
pyre/Components/Sphere/Make.mm,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Sphere/Sphere.py,
pyre/Components/Sphere/__init__.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Make.mm,
pyre/Components/Stokes_solver/__init__.py,
pyre/Components/Tracer.py, pyre/Components/Visc.py,
pyre/Components/__init__.py, pyre/Controller.py,
pyre/CoupledApp.py, pyre/Coupler.py, pyre/Layout.py,
pyre/Make.mm, pyre/Makefile.am, pyre/SimpleApp.py,
pyre/Solver/FullSolver.py, pyre/Solver/Make.mm,
pyre/Solver/RegionalSolver.py, pyre/Solver/Solver.py,
pyre/Solver/__init__.py, pyre/__init__.py.in, pyre/local.def,
tests/Make.mm, tests/Makefile.am, tests/array2d.cc,
tests/asap.py, tests/citcomsfull.sh.in,
tests/citcomsregional.sh.in, tests/coupledcitcoms.sh.in,
tests/exchange.py, tests/hrothgar.py, tests/local.def,
tests/signon.py, tests/test1.sh, tests/test2.sh, tests/test5.sh,
visual/Make.mm, visual/Makefile.am, visual/autocombine.py,
visual/batchcombine.py, visual/batchpaste.sh,
visual/batchsurf.py, visual/combine.py, visual/combinesurf.py,
visual/dxgeneral.sh, visual/dxgeneralsurf.sh,
visual/getcoord.sh, visual/getlog.sh, visual/getsurf.sh,
visual/parser.py, visual/pasteCitcomData.sh, visual/zslice.py:
Changed CitcomS license header text to GNU GPL.
2005-10-04 02:53 leif
* mc/3D/CitcomS/branches/v2/AUTHORS,
mc/3D/CitcomS/branches/v2/COPYING,
mc/3D/CitcomS/branches/v2/ChangeLog,
mc/3D/CitcomS/branches/v2/CitcomS.py-LICENSE.txt,
mc/3D/CitcomS/branches/v2/INSTALL,
mc/3D/CitcomS/branches/v2/Make.mm,
mc/3D/CitcomS/branches/v2/Makefile.am,
mc/3D/CitcomS/branches/v2/NEWS,
mc/3D/CitcomS/branches/v2/README,
mc/3D/CitcomS/branches/v2/citcoms_profile,
mc/3D/CitcomS/branches/v2/configure.ac,
mc/3D/CitcomS/branches/v2/drivers/Full/Make.mm,
mc/3D/CitcomS/branches/v2/drivers/Full/local.def,
mc/3D/CitcomS/branches/v2/drivers/Make.mm,
mc/3D/CitcomS/branches/v2/drivers/Makefile.am,
mc/3D/CitcomS/branches/v2/drivers/Regional/Make.mm,
mc/3D/CitcomS/branches/v2/drivers/Regional/local.def,
mc/3D/CitcomS/branches/v2/drivers/local.def,
mc/3D/CitcomS/branches/v2/etc/CitcomS.pml.in,
mc/3D/CitcomS/branches/v2/etc/Make.mm,
mc/3D/CitcomS/branches/v2/etc/Makefile.am,
mc/3D/CitcomS/branches/v2/etc/__vault__.odb,
mc/3D/CitcomS/branches/v2/etc/full-sphere.odb,
mc/3D/CitcomS/branches/v2/etc/full.odb,
mc/3D/CitcomS/branches/v2/etc/globus.odb,
mc/3D/CitcomS/branches/v2/etc/incomp-newtonian.odb,
mc/3D/CitcomS/branches/v2/etc/incomp-non-newtonian.odb,
mc/3D/CitcomS/branches/v2/etc/lam-mpi.odb,
mc/3D/CitcomS/branches/v2/etc/lsf.odb,
mc/3D/CitcomS/branches/v2/etc/mpich.odb,
mc/3D/CitcomS/branches/v2/etc/pbs.odb,
mc/3D/CitcomS/branches/v2/etc/regional-sphere.odb,
mc/3D/CitcomS/branches/v2/etc/regional.odb,
mc/3D/CitcomS/branches/v2/etc/temp.odb,
mc/3D/CitcomS/branches/v2/examples/Cookbook2/cookbook2.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook3/cookbook3.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook4/cookbook4.sh,
mc/3D/CitcomS/branches/v2/examples/Cookbook5/cookbook5.sh,
mc/3D/CitcomS/branches/v2/examples/Makefile.am,
mc/3D/CitcomS/branches/v2/examples/example1.sh,
mc/3D/CitcomS/branches/v2/lib/Common/Element_calculations.c,
mc/3D/CitcomS/branches/v2/lib/Common/Make.mm,
mc/3D/CitcomS/branches/v2/lib/Common/Makefile.am,
mc/3D/CitcomS/branches/v2/lib/Common/Obsolete.c,
mc/3D/CitcomS/branches/v2/lib/Common/Pan_problem_misc_functions.c,
mc/3D/CitcomS/branches/v2/lib/Common/Size_does_matter.c,
mc/3D/CitcomS/branches/v2/lib/Common/Topo_gravity.c,
mc/3D/CitcomS/branches/v2/lib/Common/Tracer_advection.c,
mc/3D/CitcomS/branches/v2/lib/Common/advection_diffusion.h,
mc/3D/CitcomS/branches/v2/lib/Common/citcom_init.h,
mc/3D/CitcomS/branches/v2/lib/Common/drive_solvers.h,
mc/3D/CitcomS/branches/v2/lib/Common/global_defs.h,
mc/3D/CitcomS/branches/v2/lib/Common/local.def,
mc/3D/CitcomS/branches/v2/lib/Common/output.h,
mc/3D/CitcomS/branches/v2/lib/Common/parallel_related.h,
mc/3D/CitcomS/branches/v2/lib/Full/Boundary_conditions.c,
mc/3D/CitcomS/branches/v2/lib/Full/Make.mm,
mc/3D/CitcomS/branches/v2/lib/Full/Makefile.am,
mc/3D/CitcomS/branches/v2/lib/Full/local.def,
mc/3D/CitcomS/branches/v2/lib/Make.mm,
mc/3D/CitcomS/branches/v2/lib/Makefile.am,
mc/3D/CitcomS/branches/v2/lib/Regional/Boundary_conditions.c,
mc/3D/CitcomS/branches/v2/lib/Regional/Make.mm,
mc/3D/CitcomS/branches/v2/lib/Regional/Makefile.am,
mc/3D/CitcomS/branches/v2/lib/Regional/local.def,
mc/3D/CitcomS/branches/v2/lib/local.def,
mc/3D/CitcomS/branches/v2/local.def,
mc/3D/CitcomS/branches/v2/module/Full/Fullmodule.cc,
mc/3D/CitcomS/branches/v2/module/Full/Make.mm,
mc/3D/CitcomS/branches/v2/module/Full/Makefile.am,
mc/3D/CitcomS/branches/v2/module/Full/local.def,
mc/3D/CitcomS/branches/v2/module/Make.mm,
mc/3D/CitcomS/branches/v2/module/Makefile.am,
mc/3D/CitcomS/branches/v2/module/Regional/Make.mm,
mc/3D/CitcomS/branches/v2/module/Regional/Makefile.am,
mc/3D/CitcomS/branches/v2/module/Regional/Regionalmodule.cc,
mc/3D/CitcomS/branches/v2/module/Regional/advdiffu.cc,
mc/3D/CitcomS/branches/v2/module/Regional/advdiffu.h,
mc/3D/CitcomS/branches/v2/module/Regional/bindings.cc,
mc/3D/CitcomS/branches/v2/module/Regional/bindings.h,
mc/3D/CitcomS/branches/v2/module/Regional/exceptions.cc,
mc/3D/CitcomS/branches/v2/module/Regional/exceptions.h,
mc/3D/CitcomS/branches/v2/module/Regional/initial_conditions.cc,
mc/3D/CitcomS/branches/v2/module/Regional/initial_conditions.h,
mc/3D/CitcomS/branches/v2/module/Regional/local.def,
mc/3D/CitcomS/branches/v2/module/Regional/mesher.cc,
mc/3D/CitcomS/branches/v2/module/Regional/mesher.h,
mc/3D/CitcomS/branches/v2/module/Regional/misc.cc,
mc/3D/CitcomS/branches/v2/module/Regional/misc.h,
mc/3D/CitcomS/branches/v2/module/Regional/outputs.cc,
mc/3D/CitcomS/branches/v2/module/Regional/outputs.h,
mc/3D/CitcomS/branches/v2/module/Regional/setProperties.cc,
mc/3D/CitcomS/branches/v2/module/Regional/setProperties.h,
mc/3D/CitcomS/branches/v2/module/Regional/stokes_solver.cc,
mc/3D/CitcomS/branches/v2/module/Regional/stokes_solver.h,
mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/Advection_diffusion.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/Components/BC.py,
mc/3D/CitcomS/branches/v2/pyre/Components/CitcomComponent.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Const.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/CoarseGridExchanger.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Exchanger.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/FineGridExchanger.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Inlet.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Outlet.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/Components/IC.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Launchers.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Components/Param.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Phase.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/FullSphere.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/RegionalSphere.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/Sphere.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/Incompressible.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Tracer.py,
mc/3D/CitcomS/branches/v2/pyre/Components/Visc.py,
mc/3D/CitcomS/branches/v2/pyre/Components/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/CoupledApp.py,
mc/3D/CitcomS/branches/v2/pyre/Coupler.py,
mc/3D/CitcomS/branches/v2/pyre/Layout.py,
mc/3D/CitcomS/branches/v2/pyre/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Makefile.am,
mc/3D/CitcomS/branches/v2/pyre/SimpleApp.py,
mc/3D/CitcomS/branches/v2/pyre/Solver/FullSolver.py,
mc/3D/CitcomS/branches/v2/pyre/Solver/Make.mm,
mc/3D/CitcomS/branches/v2/pyre/Solver/RegionalSolver.py,
mc/3D/CitcomS/branches/v2/pyre/Solver/Solver.py,
mc/3D/CitcomS/branches/v2/pyre/Solver/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/__init__.py,
mc/3D/CitcomS/branches/v2/pyre/__init__.py.in,
mc/3D/CitcomS/branches/v2/pyre/local.def,
mc/3D/CitcomS/branches/v2/tests/Make.mm,
mc/3D/CitcomS/branches/v2/tests/Makefile.am,
mc/3D/CitcomS/branches/v2/tests/asap.py,
mc/3D/CitcomS/branches/v2/tests/citcomsfull.sh,
mc/3D/CitcomS/branches/v2/tests/citcomsfull.sh.in,
mc/3D/CitcomS/branches/v2/tests/citcomsregional.sh,
mc/3D/CitcomS/branches/v2/tests/citcomsregional.sh.in,
mc/3D/CitcomS/branches/v2/tests/hrothgar.py,
mc/3D/CitcomS/branches/v2/tests/local.def,
mc/3D/CitcomS/branches/v2/tests/signon.py,
mc/3D/CitcomS/branches/v2/visual/Make.mm,
mc/3D/CitcomS/branches/v2/visual/Makefile.am,
mc/3D/CitcomS/branches/v2/visual/batchcombine.py,
mc/3D/CitcomS/branches/v2/visual/batchpaste.sh,
mc/3D/CitcomS/branches/v2/visual/batchsurf.py,
mc/3D/CitcomS/branches/v2/visual/combine.py,
mc/3D/CitcomS/branches/v2/visual/combinesurf.py,
mc/3D/CitcomS/branches/v2/visual/dxgeneral.sh,
mc/3D/CitcomS/branches/v2/visual/dxgeneralsurf.sh,
mc/3D/CitcomS/branches/v2/visual/getcoord.sh,
mc/3D/CitcomS/branches/v2/visual/getlog.sh,
mc/3D/CitcomS/branches/v2/visual/getsurf.sh,
mc/3D/CitcomS/branches/v2/visual/pasteCitcomData.sh,
Makefile.am, tests/Make.mm: Ported GNU Build System from CitcomS
trunk to v2 branch.
2005-10-04 00:34 leif
* pyre/Controller, pyre/Coupler, pyre/Facilities, pyre/Layout:
Nuked empty directories.
2005-10-01 01:17 leif
* ChangeLog: Strip "mc/3D/CitcomS/trunk" directory prefix. By the
way, this file is generated with svn2cl
(http://ch.tudelft.nl/~arthur/svn2cl/) using the command "svn
log --xml --verbose | xsltproc --stringparam strip-prefix
mc/3D/CitcomS/trunk svn2cl.xsl - > ChangeLog".
2005-10-01 01:01 leif
* AUTHORS, COPYING, ChangeLog, CitcomS.py-LICENSE.txt, INSTALL,
NEWS, README: Added various GNU standard files, including the
GPL.
2005-09-30 23:48 leif
* module/Full: Doh! Restored svn:ignore'ing of those ridiculous
symlinks used by Make.mm.
2005-09-30 22:39 leif
* ., drivers, etc, examples, lib, lib/Common, lib/Full,
lib/Regional, module, module/Exchanger, module/Full,
module/Regional, pyre, tests, visual: Ignore files generated by
Autoconf/Automake/Libtool.
2005-09-30 17:59 leif
* configure.ac: Push/pop C++ around MPI tests, which are now
sensitive to the current language. Made sure that
'--without-pyre' works in the absence of a C++ compiler (tested
on Hrothgar). When building with Pyre modules, fail if a C++
compiler is not found.
2005-09-28 23:26 leif
* configure.ac, etc/CitcomS.pml.in, etc/Make.mm, etc/Makefile.am,
pyre/Components/Launchers.py, pyre/CoupledApp.py, pyre/Make.mm,
pyre/Makefile.am, pyre/SimpleApp.py, pyre/__init__.py,
pyre/__init__.py.in, tests/Make.mm, tests/Makefile.am,
tests/citcomsfull.sh.in, tests/citcomsregional.sh.in,
tests/coupledcitcoms.sh.in: Add ${pythondir} to PYTHONPATH
before checking for Python modules, so that installing multiple
packages to a single PREFIX "just works". This also attempts to
simulate the final installation environment, which might make a
difference in unusual cases. Also, 'sed' the install-time
PYTHONPATH into CitComS scripts (instead of an explicit list of
@pythondir@'s). Added _getPrivateDepositoryLocations() and
CitcomS.pml. Changed "etc/citcoms" to "etc/CitcomS" for
consistency with the Python package name. Add PACKAGE_VERSION to
__init__.py, and added pyconfig-generated config.py. Freeze the
full path to 'mpirun' and 'mpipython.exe' at 'configure' time.
First crack at batch system configuration.
2005-09-21 00:03 leif
* Makefile.am, configure.ac,
lib/Common/Pan_problem_misc_functions.c,
lib/Common/Tracer_advection.c, module/Exchanger/Makefile.am,
module/Full/Makefile.am, module/Regional/Makefile.am,
tests/Make.mm, tests/Makefile.am, tests/citcomsfull.sh.in,
tests/citcomsregional.sh.in, tests/coupledcitcoms.sh.in: Utilize
my new 'pyconfig' facility to automatically slurp config info
from Pythia, Exchanger. Changed contact e-mail to cig-mc; other
misc. changes.
2005-09-09 19:49 leif
* Makefile.am, configure.ac, drivers/Makefile.am, etc/Makefile.am,
examples/Makefile.am, lib/Common/Makefile.am,
lib/Full/Makefile.am, lib/Makefile.am, lib/Regional/Makefile.am,
module/Exchanger/Makefile.am, module/Full/Makefile.am,
module/Makefile.am, module/Regional/Makefile.am,
pyre/Makefile.am, tests/Makefile.am, visual/Makefile.am: Added
Id keyword property to configure.ac, Makefile.am.
2005-09-09 19:41 leif
* ., Makefile.am, configure.ac, drivers/Makefile.am,
etc/Makefile.am, examples/Makefile.am, lib/Common/Makefile.am,
lib/Full/Makefile.am, lib/Makefile.am, lib/Regional/Makefile.am,
module/Exchanger/Makefile.am, module/Full, module/Full/Make.mm,
module/Full/Makefile.am, module/Make.mm, module/Makefile.am,
module/Regional/Makefile.am, pyre/Components/Launchers.py,
pyre/Makefile.am, pyre/Solver/FullSolver.py,
pyre/Solver/RegionalSolver.py, tests/Make.mm, tests/Makefile.am,
tests/citcomsfull.sh, tests/citcomsfull.sh.in,
tests/citcomsregional.sh, tests/citcomsregional.sh.in,
tests/coupledcitcoms.sh, tests/coupledcitcoms.sh.in,
visual/Makefile.am: Added files for the GNU Build System.
2005-08-29 19:28 leif
* Make.mm, citcoms_profile, drivers/Full/Make.mm,
drivers/Full/local.def, drivers/Make.mm,
drivers/Regional/Make.mm, drivers/Regional/local.def,
drivers/local.def, etc/Make.mm, etc/__vault__.odb,
etc/full-sphere.odb, etc/full.odb, etc/globus.odb,
etc/incomp-newtonian.odb, etc/incomp-non-newtonian.odb,
etc/lam-mpi.odb, etc/lsf.odb, etc/mpich.odb, etc/pbs.odb,
etc/regional-sphere.odb, etc/regional.odb, etc/temp.odb,
examples/Cookbook2/cookbook2.sh,
examples/Cookbook3/cookbook3.sh,
examples/Cookbook4/cookbook4.sh,
examples/Cookbook5/cookbook5.sh,
examples/Cookbook7/cookbook7.sh, examples/example1.sh,
lib/Common/Element_calculations.c, lib/Common/Make.mm,
lib/Common/Obsolete.c, lib/Common/Size_does_matter.c,
lib/Common/Topo_gravity.c, lib/Common/local.def,
lib/Full/Boundary_conditions.c, lib/Full/Make.mm,
lib/Full/local.def, lib/Make.mm,
lib/Regional/Boundary_conditions.c, lib/Regional/Make.mm,
lib/Regional/local.def, lib/local.def, local.def,
module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/AreaWeightedNormal.h,
module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/BoundaryVTInlet.cc,
module/Exchanger/BoundaryVTInlet.h,
module/Exchanger/CitcomInterpolator.cc,
module/Exchanger/CitcomInterpolator.h,
module/Exchanger/CitcomSource.cc,
module/Exchanger/CitcomSource.h, module/Exchanger/Convertor.cc,
module/Exchanger/Convertor.h,
module/Exchanger/Exchangermodule.cc,
module/Exchanger/Interior.cc, module/Exchanger/Interior.h,
module/Exchanger/Make.mm, module/Exchanger/SIUnit.cc,
module/Exchanger/SIUnit.h, module/Exchanger/SInlet.cc,
module/Exchanger/SInlet.h, module/Exchanger/SVTInlet.cc,
module/Exchanger/SVTInlet.h, module/Exchanger/SVTOutlet.cc,
module/Exchanger/SVTOutlet.h, module/Exchanger/TInlet.cc,
module/Exchanger/TInlet.h, module/Exchanger/TOutlet.cc,
module/Exchanger/TOutlet.h, module/Exchanger/VOutlet.cc,
module/Exchanger/VOutlet.h, module/Exchanger/VTInlet.cc,
module/Exchanger/VTInlet.h, module/Exchanger/VTOutlet.cc,
module/Exchanger/VTOutlet.h, module/Exchanger/bindings.cc,
module/Exchanger/bindings.h, module/Exchanger/exceptions.cc,
module/Exchanger/exceptions.h, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h, module/Exchanger/global_bbox.cc,
module/Exchanger/global_bbox.h,
module/Exchanger/initTemperature.cc,
module/Exchanger/initTemperature.h,
module/Exchanger/inlets_outlets.cc,
module/Exchanger/inlets_outlets.h, module/Exchanger/misc.cc,
module/Exchanger/misc.h, module/Full/Fullmodule.cc,
module/Full/Make.mm, module/Full/local.def, module/Make.mm,
module/Regional/Make.mm, module/Regional/Regionalmodule.cc,
module/Regional/advdiffu.cc, module/Regional/advdiffu.h,
module/Regional/bindings.cc, module/Regional/bindings.h,
module/Regional/exceptions.cc, module/Regional/exceptions.h,
module/Regional/initial_conditions.cc,
module/Regional/initial_conditions.h, module/Regional/local.def,
module/Regional/mesher.cc, module/Regional/mesher.h,
module/Regional/misc.cc, module/Regional/misc.h,
module/Regional/outputs.cc, module/Regional/outputs.h,
module/Regional/setProperties.cc,
module/Regional/setProperties.h,
module/Regional/stokes_solver.cc,
module/Regional/stokes_solver.h,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Advection_diffusion/Make.mm,
pyre/Components/Advection_diffusion/__init__.py,
pyre/Components/BC.py, pyre/Components/CitcomComponent.py,
pyre/Components/Const.py,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
pyre/Components/Exchanger/Inlet.py,
pyre/Components/Exchanger/Make.mm,
pyre/Components/Exchanger/Outlet.py,
pyre/Components/Exchanger/__init__.py, pyre/Components/IC.py,
pyre/Components/Launchers.py, pyre/Components/Make.mm,
pyre/Components/Param.py, pyre/Components/Phase.py,
pyre/Components/Sphere/FullSphere.py,
pyre/Components/Sphere/Make.mm,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Sphere/Sphere.py,
pyre/Components/Sphere/__init__.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Make.mm,
pyre/Components/Stokes_solver/__init__.py,
pyre/Components/Tracer.py, pyre/Components/Visc.py,
pyre/Components/__init__.py, pyre/CoupledApp.py,
pyre/Coupler.py, pyre/Layout.py, pyre/Make.mm,
pyre/SimpleApp.py, pyre/Solver/FullSolver.py,
pyre/Solver/Make.mm, pyre/Solver/RegionalSolver.py,
pyre/Solver/Solver.py, pyre/Solver/__init__.py,
pyre/__init__.py, pyre/local.def, tests/Make.mm,
tests/array2d.cc, tests/asap.py, tests/citcomsfull.sh,
tests/citcomsregional.sh, tests/coupledcitcoms.sh,
tests/exchange.py, tests/hrothgar.py, tests/local.def,
tests/signon.py, tests/test1.sh, tests/test2.sh, tests/test5.sh,
visual/Make.mm, visual/autocombine.py, visual/batchcombine.py,
visual/batchpaste.sh, visual/batchsurf.py, visual/combine.py,
visual/combinesurf.py, visual/dxgeneral.sh,
visual/dxgeneralsurf.sh, visual/getcoord.sh, visual/getlog.sh,
visual/getsurf.sh, visual/miff2avi, visual/miff2mpg,
visual/parser.py, visual/pasteCitcomData.sh, visual/zslice.py:
Added executable property and 'Id' keyword expansion.
2005-08-27 03:04 leif
* lib/Common/advection_diffusion.h, lib/Common/citcom_init.h,
lib/Common/drive_solvers.h, lib/Common/global_defs.h,
lib/Common/output.h, lib/Common/parallel_related.h,
module/Regional/advdiffu.cc,
module/Regional/initial_conditions.cc,
module/Regional/mesher.cc, module/Regional/misc.cc,
module/Regional/outputs.cc, module/Regional/stokes_solver.cc:
Avoid 'extern "C" { #include ... }'; it causes problems with
mpi++.h/mpicxx.h.
2005-07-27 08:58 leif
* etc/mpich.odb, pyre/Components/Launchers.py, pyre/SimpleApp.py:
Fixed it so that the uniprocessor examples work again. This
invovled creating CitcomS's own version of LauncherMPICH, and
tweaking the MPI launchers so that CitcomS re-execs itself under
'mpipython.exe' when it is run under plain old 'python'. Also:
made "--launcher.dry" work; ignore 'nodegen' in LauncherBatch
(so that the examples "just work" on the TeraGrid); added some
'tips' ("--launcher.help-properties"); added SimpleApp.usage().
2005-07-23 08:35 leif
* Make.mm, examples/Cookbook1/cookbook1.sh,
examples/Cookbook2/cookbook2.sh,
examples/Cookbook3/cookbook3.sh,
examples/Cookbook4/cookbook4.sh,
examples/Cookbook5/cookbook5.sh, examples/example1.sh,
tests/Make.mm, tests/array2d.cc, visual/Make.mm: General build
clean-up: 'export' all the various scripts to $EXPORT_ROOT/bin,
so that goofy relative paths are not needed (e.g.,
"../tests/citcomsregional.sh"); and so that the 'visual'
directory doesn't have to be added to the PATH. I also
dusted-off 'array2d' -- it compiles and links now.
2005-07-23 08:00 leif
* module/Regional/misc.cc: Raise an exception -- instead of
crashing -- when pyCitcom_citcom_init() is passed a null
"mpi::Communicator *" argument.
2005-07-22 10:03 leif
* pyre/Components/Launchers.py: Switched from Python's '%'
operator to pyre.util.expandMacros(), so that I don't have to
escape '%' (e.g., --launcher.nodegen="n%03d"). Also, export key
environment variables to LAM/MPI jobs.
2005-07-22 05:55 leif
* lib/Common/Make.mm, lib/Common/local.def, lib/Full/Make.mm,
lib/Full/local.def, lib/Regional/Make.mm,
lib/Regional/local.def: Build with soflags to produce
position-independent code. 'Export' the resulting shared
libraries.
2005-07-20 04:23 leif
* tests/citcomsfull.sh, tests/citcomsregional.sh,
tests/coupledcitcoms.sh: Use 'python' instead of 'mpipython.exe'
-- on some TeraGrid clusters, MPI programs cannot be run
directly.
2005-07-20 04:12 leif
* examples/ncsa.sh, examples/tacc.sh: Removed sample batch
scripts, which are obsoleted by my new launchers. Use
"--launcher=pbs" or "--launcher=lsf" on NCSA and TACC,
respectively.
2005-07-20 04:07 leif
* etc/Make.mm, etc/globus.odb, etc/lam-mpi.odb, etc/lsf.odb,
etc/mpich.odb, etc/pbs.odb, pyre/Components/Launchers.py,
pyre/Components/Make.mm: Added Pyre launchers for LAM/MPI,
Globus, LSF, and PBS. This is their temporary home; they should
be incorporated into Pyre eventually.
2005-07-20 03:55 leif
* visual/batchpaste.sh: Merged revision 1.5.2.1 from CitcomS-2_x
branch to trunk: tan2: "a fix for single-processor (eg. laptop)".
2005-06-30 08:31 leif
* lib/Common/global_defs.h, module/Exchanger/Make.mm,
module/Full/Make.mm, module/Regional/Make.mm: Changes for Mac OS
X build.
2005-08-23 03:42 unknown_user
* pyre/Facilities/Make.mm, pyre/Facilities/Mesher.py,
pyre/Facilities/Solver.py, pyre/Facilities/TSolver.py,
pyre/Facilities/VSolver.py, pyre/Facilities/__init__.py: [vcp]
delete of edited revision with dead state
2005-06-18 04:24 leif
* pyre/Facilities/Make.mm, pyre/Facilities/Mesher.py,
pyre/Facilities/Solver.py, pyre/Facilities/TSolver.py,
pyre/Facilities/VSolver.py, pyre/Facilities/__init__.py,
pyre/Make.mm: Removed 'Facilities' directory -- no longer needed
under Pythia v0.8.
2005-06-18 04:20 leif
* examples/ncsa.sh, examples/tacc.sh: Added example batch scripts
for NCSA and TACC TeraGrid clusters.
2005-06-18 02:07 ces74
* visual/visFull.cfg, visual/visFull.net, visual/visRegional.cfg,
visual/visRegional.net, visual/visRegionalSurface.cfg,
visual/visRegionalSurface.net: * removed default paths to
input/output files. * removed absolute paths to macros.
2005-06-16 02:33 tan2
* visual/autocombine.py: script to automatically read input
parameters from input file and call batchcombine.py
* visual/batchcombine.py: 1. moved parts of the script into
functions so that other scripts can import them. 2. raise
ValueError when the length of machinefile is not right
2005-06-16 02:30 tan2
* visual/parser.py: using new-style class
2005-06-16 01:27 tan2
* pyre/Components/Sphere/Sphere.py, pyre/Solver/Solver.py: print
messages to stderr instead of stdout
2005-06-14 23:47 leif
* module/Full/Make.mm, module/Regional/Make.mm: Corrected use of
-Xlinker.
2005-06-10 09:23 leif
* CitcomS.py-LICENSE.txt, drivers/Citcom.c, drivers/Full/Make.mm,
drivers/Full/local.def, drivers/Make.mm,
drivers/Regional/Make.mm, drivers/Regional/local.def,
drivers/local.def, etc/Make.mm, etc/__vault__.odb,
etc/full-sphere.odb, etc/full.odb, etc/incomp-newtonian.odb,
etc/incomp-non-newtonian.odb, etc/regional-sphere.odb,
etc/regional.odb, etc/temp.odb, examples/Cookbook1/cookbook1.sh,
examples/Cookbook2/cookbook2.sh,
examples/Cookbook3/cookbook3.sh,
examples/Cookbook4/cookbook4.sh,
examples/Cookbook5/cookbook5.sh,
examples/Cookbook7/cookbook7.sh, examples/example1.sh,
lib/Common/Advection_diffusion.c, lib/Common/Citcom_init.c,
lib/Common/Construct_arrays.c, lib/Common/Convection.c,
lib/Common/Drive_solvers.c, lib/Common/Element_calculations.c,
lib/Common/General_matrix_functions.c,
lib/Common/Global_operations.c,
lib/Common/Initial_temperature.c, lib/Common/Instructions.c,
lib/Common/Interuption.c, lib/Common/Make.mm,
lib/Common/Nodal_mesh.c, lib/Common/Obsolete.c,
lib/Common/Output.c, lib/Common/Pan_problem_misc_functions.c,
lib/Common/Parsing.c, lib/Common/Phase_change.c,
lib/Common/Problem_related.c, lib/Common/Process_buoyancy.c,
lib/Common/Shape_functions.c, lib/Common/Size_does_matter.c,
lib/Common/Solver_conj_grad.c, lib/Common/Solver_multigrid.c,
lib/Common/Sphere_harmonics.c, lib/Common/Stokes_flow_Incomp.c,
lib/Common/Topo_gravity.c, lib/Common/Tracer_advection.c,
lib/Common/Viscosity_structures.c, lib/Common/advection.h,
lib/Common/advection_diffusion.h, lib/Common/citcom_init.h,
lib/Common/convection_variables.h, lib/Common/drive_solvers.h,
lib/Common/element_definitions.h, lib/Common/global_defs.h,
lib/Common/initial_temperature.h, lib/Common/interuption.h,
lib/Common/lith_age.h, lib/Common/local.def,
lib/Common/output.h, lib/Common/parallel_related.h,
lib/Common/parsing.h, lib/Common/phase_change.h,
lib/Common/sphere_communication.h,
lib/Common/temperature_descriptions.h, lib/Common/tracer_defs.h,
lib/Common/viscosity_descriptions.h,
lib/Full/Boundary_conditions.c, lib/Full/Geometry_cartesian.c,
lib/Full/Lith_age.c, lib/Full/Make.mm, lib/Full/Obsolete.c,
lib/Full/Parallel_related.c, lib/Full/Read_input_from_files.c,
lib/Full/Sphere_related.c, lib/Full/Version_dependent.c,
lib/Full/local.def, lib/Make.mm,
lib/Regional/Boundary_conditions.c,
lib/Regional/Geometry_cartesian.c, lib/Regional/Lith_age.c,
lib/Regional/Make.mm, lib/Regional/Obsolete.c,
lib/Regional/Parallel_related.c,
lib/Regional/Read_input_from_files.c,
lib/Regional/Sphere_related.c, lib/Regional/Version_dependent.c,
lib/Regional/local.def, lib/local.def,
module/Full/Fullmodule.cc, module/Full/Make.mm,
module/Full/local.def, module/Make.mm, module/Regional/Make.mm,
module/Regional/Regionalmodule.cc, module/Regional/advdiffu.cc,
module/Regional/advdiffu.h, module/Regional/bindings.cc,
module/Regional/bindings.h, module/Regional/exceptions.cc,
module/Regional/exceptions.h,
module/Regional/initial_conditions.cc,
module/Regional/initial_conditions.h, module/Regional/local.def,
module/Regional/mesher.cc, module/Regional/mesher.h,
module/Regional/misc.cc, module/Regional/misc.h,
module/Regional/outputs.cc, module/Regional/outputs.h,
module/Regional/setProperties.cc,
module/Regional/setProperties.h,
module/Regional/stokes_solver.cc,
module/Regional/stokes_solver.h,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Advection_diffusion/Make.mm,
pyre/Components/Advection_diffusion/__init__.py,
pyre/Components/BC.py, pyre/Components/CitcomComponent.py,
pyre/Components/Const.py,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
pyre/Components/Exchanger/Inlet.py,
pyre/Components/Exchanger/Make.mm,
pyre/Components/Exchanger/Outlet.py,
pyre/Components/Exchanger/__init__.py, pyre/Components/IC.py,
pyre/Components/Make.mm, pyre/Components/Param.py,
pyre/Components/Phase.py, pyre/Components/Sphere/FullSphere.py,
pyre/Components/Sphere/Make.mm,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Sphere/Sphere.py,
pyre/Components/Sphere/__init__.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Make.mm,
pyre/Components/Stokes_solver/__init__.py,
pyre/Components/Tracer.py, pyre/Components/Visc.py,
pyre/Components/__init__.py, pyre/Controller.py,
pyre/CoupledApp.py, pyre/Coupler.py, pyre/Facilities/Make.mm,
pyre/Facilities/Mesher.py, pyre/Facilities/Solver.py,
pyre/Facilities/TSolver.py, pyre/Facilities/VSolver.py,
pyre/Facilities/__init__.py, pyre/Layout.py, pyre/Make.mm,
pyre/SimpleApp.py, pyre/Solver/FullSolver.py,
pyre/Solver/Make.mm, pyre/Solver/RegionalSolver.py,
pyre/Solver/Solver.py, pyre/Solver/__init__.py,
pyre/__init__.py, pyre/local.def, tests/Make.mm,
tests/array2d.cc, tests/asap.py, tests/citcomsfull.sh,
tests/citcomsregional.sh, tests/coupledcitcoms.sh,
tests/exchange.py, tests/hrothgar.py, tests/local.def,
tests/signon.py, tests/test1.sh, tests/test2.sh, tests/test5.sh,
visual/batchcombine.py, visual/batchpaste.sh,
visual/batchsurf.py, visual/combine.py, visual/combinesurf.py,
visual/dxgeneral.sh, visual/dxgeneralsurf.sh,
visual/getcoord.sh, visual/getlog.sh, visual/getsurf.sh,
visual/parser.py, visual/pasteCitcomData.sh, visual/zslice.py:
Added license text.
2005-06-08 11:02 tan2
* examples/Cookbook5/cookbook5.sh: 1. subsitute 'staging' with
'launcher' as required by pythia-0.8 2. removed unneccesary
input parameters
2005-06-08 08:55 leif
* pyre/CoupledApp.py, pyre/SimpleApp.py,
pyre/Solver/FullSolver.py, pyre/Solver/RegionalSolver.py,
pyre/Solver/Solver.py: Port from pythia-0.4 to pythia-0.8,
continued: use "factory=" instead of "default=" in facilities
where appropriate. The scripts example1.sh and test5.sh seem to
work now.
2005-06-06 06:41 tan2
* visual/parser.py: Parser class to parse CitcomS input file
2005-06-06 06:13 tan2
* visual/batchpaste.sh: execute 'cmd_copy' only if 'cmd_paste' was
finished without error
2005-06-04 04:51 leif
* Make.mm, etc, etc/Make.mm, etc/__vault__.odb,
etc/full-sphere.odb, etc/full.odb, etc/incomp-newtonian.odb,
etc/incomp-non-newtonian.odb, etc/regional-sphere.odb,
etc/regional.odb, etc/temp.odb, examples/Cookbook1/cookbook1.sh,
examples/Cookbook2/cookbook2.sh,
examples/Cookbook3/cookbook3.sh,
examples/Cookbook4/cookbook4.sh,
examples/Cookbook7/cookbook7.sh, examples/example1.sh,
module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/Boundary.cc,
module/Exchanger/CitcomInterpolator.cc,
module/Exchanger/CitcomSource.cc, module/Exchanger/Convertor.cc,
module/Exchanger/Interior.cc, module/Exchanger/Make.mm,
module/Exchanger/SInlet.cc, module/Exchanger/SVTInlet.cc,
module/Exchanger/SVTOutlet.cc, module/Exchanger/TInlet.cc,
module/Exchanger/TOutlet.cc, module/Exchanger/VOutlet.cc,
module/Exchanger/VTInlet.cc, module/Exchanger/VTOutlet.cc,
module/Exchanger/initTemperature.cc, module/Full/Make.mm,
module/Regional/Make.mm,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/BC.py, pyre/Components/Const.py,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
pyre/Components/IC.py, pyre/Components/Param.py,
pyre/Components/Phase.py,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Sphere/Sphere.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Tracer.py, pyre/Components/Visc.py,
pyre/Controller.py, pyre/CoupledApp.py,
pyre/Facilities/Mesher.py, pyre/Facilities/Solver.py,
pyre/Facilities/TSolver.py, pyre/Facilities/VSolver.py,
pyre/Layout.py, pyre/SimpleApp.py, pyre/Solver/FullSolver.py,
pyre/Solver/RegionalSolver.py, pyre/Solver/Solver.py,
tests/exchange.py, tests/test1.sh, tests/test2.sh,
tests/test5.sh: Initial port from pythia-0.4 to pythia-0.8.
2005-05-28 12:27 ces74
* lib/Regional/Version_dependent.c,
module/Regional/setProperties.cc, pyre/Components/IC.py: * If a
user doesn't specify "blob_center", assign [-999.,-999.,-999] as
a default values in IC.py. * The real default values are
assigned in setProperties.cc * The distance calculation in
"construct_tic_from_input" modified. * A bug in
non-dimensionalizing half_space_age fixed.
2005-05-28 04:41 vlad
* examples/example1.sh: *** empty log message ***
2005-05-28 04:11 gurnis
* examples/Cookbook1/cookbook1.sh: *** empty log message ***
2005-05-28 01:39 vlad
* examples/Cookbook5/velocity,
examples/Cookbook5/velocity/bvel.dat0,
examples/Cookbook5/velocity/bvel.dat1,
examples/Cookbook5/velocity/bvel.dat10,
examples/Cookbook5/velocity/bvel.dat11,
examples/Cookbook5/velocity/bvel.dat12,
examples/Cookbook5/velocity/bvel.dat13,
examples/Cookbook5/velocity/bvel.dat14,
examples/Cookbook5/velocity/bvel.dat15,
examples/Cookbook5/velocity/bvel.dat16,
examples/Cookbook5/velocity/bvel.dat17,
examples/Cookbook5/velocity/bvel.dat18,
examples/Cookbook5/velocity/bvel.dat19,
examples/Cookbook5/velocity/bvel.dat2,
examples/Cookbook5/velocity/bvel.dat20,
examples/Cookbook5/velocity/bvel.dat21,
examples/Cookbook5/velocity/bvel.dat22,
examples/Cookbook5/velocity/bvel.dat23,
examples/Cookbook5/velocity/bvel.dat24,
examples/Cookbook5/velocity/bvel.dat25,
examples/Cookbook5/velocity/bvel.dat26,
examples/Cookbook5/velocity/bvel.dat27,
examples/Cookbook5/velocity/bvel.dat28,
examples/Cookbook5/velocity/bvel.dat29,
examples/Cookbook5/velocity/bvel.dat3,
examples/Cookbook5/velocity/bvel.dat30,
examples/Cookbook5/velocity/bvel.dat31,
examples/Cookbook5/velocity/bvel.dat32,
examples/Cookbook5/velocity/bvel.dat33,
examples/Cookbook5/velocity/bvel.dat34,
examples/Cookbook5/velocity/bvel.dat35,
examples/Cookbook5/velocity/bvel.dat36,
examples/Cookbook5/velocity/bvel.dat37,
examples/Cookbook5/velocity/bvel.dat38,
examples/Cookbook5/velocity/bvel.dat39,
examples/Cookbook5/velocity/bvel.dat4,
examples/Cookbook5/velocity/bvel.dat40,
examples/Cookbook5/velocity/bvel.dat41,
examples/Cookbook5/velocity/bvel.dat42,
examples/Cookbook5/velocity/bvel.dat43,
examples/Cookbook5/velocity/bvel.dat44,
examples/Cookbook5/velocity/bvel.dat45,
examples/Cookbook5/velocity/bvel.dat46,
examples/Cookbook5/velocity/bvel.dat47,
examples/Cookbook5/velocity/bvel.dat48,
examples/Cookbook5/velocity/bvel.dat49,
examples/Cookbook5/velocity/bvel.dat5,
examples/Cookbook5/velocity/bvel.dat50,
examples/Cookbook5/velocity/bvel.dat51,
examples/Cookbook5/velocity/bvel.dat52,
examples/Cookbook5/velocity/bvel.dat53,
examples/Cookbook5/velocity/bvel.dat54,
examples/Cookbook5/velocity/bvel.dat55,
examples/Cookbook5/velocity/bvel.dat56,
examples/Cookbook5/velocity/bvel.dat57,
examples/Cookbook5/velocity/bvel.dat58,
examples/Cookbook5/velocity/bvel.dat59,
examples/Cookbook5/velocity/bvel.dat6,
examples/Cookbook5/velocity/bvel.dat60,
examples/Cookbook5/velocity/bvel.dat61,
examples/Cookbook5/velocity/bvel.dat62,
examples/Cookbook5/velocity/bvel.dat63,
examples/Cookbook5/velocity/bvel.dat64,
examples/Cookbook5/velocity/bvel.dat65,
examples/Cookbook5/velocity/bvel.dat66,
examples/Cookbook5/velocity/bvel.dat67,
examples/Cookbook5/velocity/bvel.dat68,
examples/Cookbook5/velocity/bvel.dat69,
examples/Cookbook5/velocity/bvel.dat7,
examples/Cookbook5/velocity/bvel.dat70,
examples/Cookbook5/velocity/bvel.dat71,
examples/Cookbook5/velocity/bvel.dat8,
examples/Cookbook5/velocity/bvel.dat9: Velocity files
2005-05-28 01:38 vlad
* examples/Cookbook5/restart_files,
examples/Cookbook5/restart_files/cookbook5.velo.0.0,
examples/Cookbook5/restart_files/cookbook5.velo.1.0,
examples/Cookbook5/restart_files/cookbook5.velo.10.0,
examples/Cookbook5/restart_files/cookbook5.velo.11.0,
examples/Cookbook5/restart_files/cookbook5.velo.12.0,
examples/Cookbook5/restart_files/cookbook5.velo.13.0,
examples/Cookbook5/restart_files/cookbook5.velo.14.0,
examples/Cookbook5/restart_files/cookbook5.velo.15.0,
examples/Cookbook5/restart_files/cookbook5.velo.16.0,
examples/Cookbook5/restart_files/cookbook5.velo.17.0,
examples/Cookbook5/restart_files/cookbook5.velo.18.0,
examples/Cookbook5/restart_files/cookbook5.velo.19.0,
examples/Cookbook5/restart_files/cookbook5.velo.2.0,
examples/Cookbook5/restart_files/cookbook5.velo.20.0,
examples/Cookbook5/restart_files/cookbook5.velo.21.0,
examples/Cookbook5/restart_files/cookbook5.velo.22.0,
examples/Cookbook5/restart_files/cookbook5.velo.23.0,
examples/Cookbook5/restart_files/cookbook5.velo.24.0,
examples/Cookbook5/restart_files/cookbook5.velo.25.0,
examples/Cookbook5/restart_files/cookbook5.velo.26.0,
examples/Cookbook5/restart_files/cookbook5.velo.27.0,
examples/Cookbook5/restart_files/cookbook5.velo.28.0,
examples/Cookbook5/restart_files/cookbook5.velo.29.0,
examples/Cookbook5/restart_files/cookbook5.velo.3.0,
examples/Cookbook5/restart_files/cookbook5.velo.30.0,
examples/Cookbook5/restart_files/cookbook5.velo.31.0,
examples/Cookbook5/restart_files/cookbook5.velo.32.0,
examples/Cookbook5/restart_files/cookbook5.velo.33.0,
examples/Cookbook5/restart_files/cookbook5.velo.34.0,
examples/Cookbook5/restart_files/cookbook5.velo.35.0,
examples/Cookbook5/restart_files/cookbook5.velo.36.0,
examples/Cookbook5/restart_files/cookbook5.velo.37.0,
examples/Cookbook5/restart_files/cookbook5.velo.38.0,
examples/Cookbook5/restart_files/cookbook5.velo.39.0,
examples/Cookbook5/restart_files/cookbook5.velo.4.0,
examples/Cookbook5/restart_files/cookbook5.velo.40.0,
examples/Cookbook5/restart_files/cookbook5.velo.41.0,
examples/Cookbook5/restart_files/cookbook5.velo.42.0,
examples/Cookbook5/restart_files/cookbook5.velo.43.0,
examples/Cookbook5/restart_files/cookbook5.velo.44.0,
examples/Cookbook5/restart_files/cookbook5.velo.45.0,
examples/Cookbook5/restart_files/cookbook5.velo.46.0,
examples/Cookbook5/restart_files/cookbook5.velo.47.0,
examples/Cookbook5/restart_files/cookbook5.velo.48.0,
examples/Cookbook5/restart_files/cookbook5.velo.49.0,
examples/Cookbook5/restart_files/cookbook5.velo.5.0,
examples/Cookbook5/restart_files/cookbook5.velo.50.0,
examples/Cookbook5/restart_files/cookbook5.velo.51.0,
examples/Cookbook5/restart_files/cookbook5.velo.52.0,
examples/Cookbook5/restart_files/cookbook5.velo.53.0,
examples/Cookbook5/restart_files/cookbook5.velo.54.0,
examples/Cookbook5/restart_files/cookbook5.velo.55.0,
examples/Cookbook5/restart_files/cookbook5.velo.56.0,
examples/Cookbook5/restart_files/cookbook5.velo.57.0,
examples/Cookbook5/restart_files/cookbook5.velo.58.0,
examples/Cookbook5/restart_files/cookbook5.velo.59.0,
examples/Cookbook5/restart_files/cookbook5.velo.6.0,
examples/Cookbook5/restart_files/cookbook5.velo.60.0,
examples/Cookbook5/restart_files/cookbook5.velo.61.0,
examples/Cookbook5/restart_files/cookbook5.velo.62.0,
examples/Cookbook5/restart_files/cookbook5.velo.63.0,
examples/Cookbook5/restart_files/cookbook5.velo.7.0,
examples/Cookbook5/restart_files/cookbook5.velo.8.0,
examples/Cookbook5/restart_files/cookbook5.velo.9.0: Restart
files
2005-05-28 01:35 vlad
* examples/Cookbook5, examples/Cookbook5/cookbook5.sh,
examples/Cookbook5/coor.dat: Cookbook5 and coordinate files
2005-05-25 08:22 tan2
* visual/zslice.py: changed the hard-wire path (/usr/bin/python)
to run-time dep. path
2005-05-25 04:28 tan2
* visual/zslice.py: a utility script to slize horizontal layers
from CitcomS output. See docstring for usage.
2005-05-25 01:12 leif
* module/Make.mm: Prefer "$(MM)" to "mm".
2005-05-24 05:15 ces74
* examples/Cookbook7, examples/Cookbook7/README,
examples/Cookbook7/cookbook7.sh, examples/Cookbook7/coord.dat: *
adding a script to run the Cookbook7 example and coord.dat file.
* README for some additional information.
2005-05-24 05:00 ces74
* lib/Common/Initial_temperature.c,
lib/Common/convection_variables.h,
lib/Regional/Sphere_related.c, lib/Regional/Version_dependent.c,
module/Regional/setProperties.cc, pyre/Components/IC.py: * added
new parameters to control a hot blob as temperature IC. - One
can specify three parameters: 1. Coordinates(theta,fi,r) of the
center. 2. Radius. 3. The amount of temperature
increase/decrease within the blob. - Currently works only for
the Regional version. - CitcomS variable name:
convection.blob_center, convection.blob_radius,
convection.blob_dT - Pyre parameter name: solver.ic.blob_center,
solver.ic.blob_radius, solver.ic.blob_dT - it is required to set
"solver.ic.tic_method=2" * the format of coordinates file has
been modified. - "nsd=1" is not recognized as "%s%d" on some
machine. - now it should be "nsd= 1" to be read as "%s %d".
2005-05-20 05:39 leif
* module/Exchanger/CitcomInterpolator.cc,
module/Exchanger/global_bbox.cc,
module/Regional/setProperties.cc: Include <cmath> in various
files. Fixes compilation errors with GCC v3.4.3.
2005-05-20 05:01 ces74
* module/Exchanger/initTemperature.cc: * added a new function for
the initial temperature field. - called "hot_blob_lith" -
Thermal boudnary layer on top + one hot bloc at the center.
2005-05-19 01:27 leif
* lib/Regional/Boundary_conditions.c: Added a prototype for
temperatures_conform_bcs() -- fixes compilation failure with GCC
v3.4.3.
2005-05-18 08:57 tan2
* tests/test5.sh: test for coupled run
2005-05-18 03:54 tan2
* module/Exchanger/Make.mm: using rpath to specify runtime library
path
2005-05-18 02:45 tan2
* module/Full/Make.mm, module/Regional/Make.mm: using rpath to
specify runtime library path
2005-05-17 07:35 tan2
* module/Full/Make.mm, module/Regional/Make.mm: the full path of
shared library is given, otherwise g++ can compile but the
program couldn't find the shared library at the run time
2005-05-17 06:53 vlad
* lib/Common/Output.c, lib/Common/Tracer_advection.c,
lib/Common/tracer_defs.h: 3D MPI tracer-advection code
2005-04-11 19:09 steve
* lib/Common/Make.mm, lib/Full/Make.mm, lib/Regional/Make.mm:
facelifted to work with new "config" repository (cvs -d
:pserver:config@cvs.cacr.caltech.edu:/config co config). I think
this will still work with the old config... Eh you may want to
check.
2005-03-30 10:34 vlad
* lib/Common/Output.c, lib/Common/Tracer_advection.c,
lib/Common/tracer_defs.h: *** empty log message ***
2005-03-30 10:27 vlad
* lib/Common/Output.c, lib/Common/Tracer_advection.c,
lib/Common/tracer_defs.h: *** empty log message ***
2005-03-11 12:23 steve
* module/Exchanger/Make.mm: Added EXCHANGER_INCDIR and
EXCHANGER_LIBDIR, as in my case, I do not build exchanger into
either pythia's or citcom's build root (but into its own)
2005-03-11 08:24 vlad
* lib/Common/Output.c, lib/Common/Phase_change.c: *** empty log
message ***
2005-03-09 06:24 vlad
* lib/Common/Tracer_advection.c: The tracer code only works in
root processor
2005-02-18 08:13 tan2
* pyre/Components/IC.py: fixed a bug in the validator of
'tic_method'
2005-02-18 07:15 tan2
* module/Regional/setProperties.cc: added new parameter
'tic_method' and 'half_space_age'
2005-02-18 06:57 tan2
* pyre/Components/IC.py: 1. added validator to some of the input.
2. added new parameter 'tic_method' and 'half_space_age'.
2005-02-18 06:14 tan2
* lib/Full/Version_dependent.c, lib/Regional/Version_dependent.c:
implementation of cooling plate temperature is pending.
2005-02-18 06:12 tan2
* lib/Common/Initial_temperature.c,
lib/Common/convection_variables.h: Added new input parameter:
tic_method. When it is 0 (default), the temperature is a linear
profile + perturbation at some layers. When it is 1, the
temperature is isothermal (== bottom b.c.) + uniformly cold
plate (thickness specified by 'half_space_age').
2005-02-05 02:51 ces74
* module/Exchanger/SInlet.cc, module/Exchanger/SInlet.h,
module/Exchanger/bindings.cc,
module/Exchanger/inlets_outlets.cc,
module/Exchanger/inlets_outlets.h: * bindings for the SInlet
class added. * setSBCFlag() method added to SInlet.
2005-02-03 05:49 tan2
* module/Exchanger/Boundary.cc: fixed a bug in finding boundary
nodes and rearraged code
2005-01-29 08:23 ces74
* pyre/Components/Exchanger/Inlet.py: * SInlet class added
2005-01-29 08:15 ces74
* module/Exchanger/Make.mm, module/Exchanger/SIUnit.cc,
module/Exchanger/SInlet.cc, module/Exchanger/SInlet.h: * added a
new class SInlet to receive stress from the coupled solver. *
"stress_factor" defined in SIUnit.cc
2005-01-29 03:20 tan2
* module/Exchanger/Make.mm: removed redudant include and library
path. PYTHIA_INCDIR and PYTHIA_LIBDIR must be defined.
2005-01-27 06:10 tan2
* lib/Common/Tracer_advection.c: removed tracer_output(), which is
replaced by output_tracer() in Output.c
2005-01-27 06:05 tan2
* drivers/Citcom.c: removed calls to tracer_output(), which is
replaced by output_tracer() in Output.c
2005-01-26 07:01 ces74
* lib/Common/Instructions.c: * removed a useless block of code
2005-01-26 04:05 tan2
* lib/Common/Tracer_advection.c: 1. Commented out part of the code
that use itcolor, which is the starting age of the tracer. 2.
Added a few comments about the code. This should help people to
read the code.
2005-01-24 05:20 tan2
* pyre/Components/Exchanger/Exchanger.py: commented out debugging
output
2005-01-21 06:29 tan2
* module/Regional/setProperties.cc, pyre/Components/Param.py:
removed 'tracer' and 'tracer_file' properties from Param class
(these properties are moved to Tracer class)
2005-01-21 06:25 tan2
* pyre/Components/Visc.py: fixed a bug in reading viscZ property
2005-01-20 03:02 ces74
* pyre/Components/BC.py: * A BC property, "pseudo_free_surf",
added. Its default value is False.
2005-01-20 02:55 tan2
* module/Regional/setProperties.cc, pyre/Components/Visc.py: added
new properties visc.viscZ and visc.rheol
2005-01-20 02:35 vlad
* lib/Common/Viscosity_structures.c: a new viscosity law was added
(case 4)
2005-01-19 10:19 tan2
* lib/Common/Output.c: added function output_tracer()
2005-01-19 10:02 tan2
* pyre/Components/Tracer.py, pyre/Solver/Solver.py: added Tracer
module into Solver
2005-01-19 10:01 tan2
* module/Regional/bindings.cc, module/Regional/misc.cc,
module/Regional/misc.h: added binding to tracer_advection()
2005-01-19 09:05 tan2
* module/Regional/bindings.cc, module/Regional/setProperties.cc,
module/Regional/setProperties.h: added bindings to tracer input
2005-01-19 08:57 tan2
* pyre/Components/Make.mm: added Tracer.py to file list
2005-01-19 08:44 tan2
* pyre/Components/Tracer.py: added Tracer module
2005-01-19 08:43 tan2
* lib/Common/Tracer_advection.c: changed the default value of
E->control.tracer_file
2005-01-19 08:38 tan2
* module/Regional/mesher.cc: modified according to changes in
lib/Common/Instructions.c (add tracer module)
2005-01-19 08:36 tan2
* lib/Common/Instructions.c: fixed a syntax error
2005-01-19 08:35 tan2
* lib/Common/Instructions.c, lib/Common/Tracer_advection.c: 1.
moved input of tracer-related parameters to tracer_input() 2.
changed where tracer_initial_settings() is called
2005-01-19 07:19 tan2
* lib/Common/global_defs.h: fixed a problem in function pointer
declaration
* drivers/Citcom.c: uncommented tracer module
2005-01-19 06:30 vlad
* examples/Cookbook4, examples/Cookbook4/cookbook4.sh,
examples/Cookbook4/coor.dat: new cookbook with a refined mesh
2005-01-19 06:24 tan2
* tests/signon.py: *** empty log message ***
2005-01-08 11:24 ces74
* lib/Common/Element_calculations.c: * removed unnecessary
debugging output from get_elt_tr()
2005-01-08 11:20 ces74
* module/Regional/bindings.cc, module/Regional/outputs.cc,
module/Regional/outputs.h, module/Regional/stokes_solver.cc,
module/Regional/stokes_solver.h: * call Citcom's functions in
output, general_stokes_solver, respectively, instead of creating
pseudo_surf bindings for each
2005-01-08 11:02 ces74
* module/Regional/bindings.cc, module/Regional/outputs.cc,
module/Regional/outputs.h, module/Regional/setProperties.cc,
module/Regional/stokes_solver.cc,
module/Regional/stokes_solver.h: * added bindings for new
functions for the "pseudo free surface" formulation
2005-01-08 10:57 ces74
* lib/Common/Instructions.c: * always assign memory for free_surf
and Vprev for now. - in the future, need to save memory when
pseudo_free_surf is off.
2005-01-08 10:16 ces74
* drivers/Citcom.c: * modified to enable the "pseudo free surface"
mode.
2005-01-08 10:15 ces74
* lib/Common/Drive_solvers.c, lib/Common/Element_calculations.c,
lib/Common/Instructions.c, lib/Common/Output.c,
lib/Common/Stokes_flow_Incomp.c, lib/Common/Topo_gravity.c,
lib/Common/global_defs.h, lib/Common/output.h: * functions added
to track pseudo free surface and compute normal traction from it.
2005-01-05 06:58 tan2
* module/Exchanger/SVTInlet.cc: removed the declaration of my_tbc()
2005-01-05 06:57 tan2
* module/Exchanger/SVTInlet.cc: 1. uncommented the journal output
2. removed codes about 'upwind bc', as it is proved not
accurate. 3. removed a call to my_tbc(), which is specific to my
Hawaii plume model and sliped through the repository
2005-01-01 03:00 tan2
* lib/Common/Advection_diffusion.c, lib/Common/Convection.c: move
parameter input from Convection.c to Advection_diffusion.c
2004-12-31 09:03 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h: fixed
a bug when nprocz>1 and excludeTop or/add excludeBottom is
turned on
2004-12-28 09:38 tan2
* module/Exchanger/Boundary.cc: fixed a bug, which causes some
nodes being excluded from Boundary when excludeTop or
excludeBottom are turned off
2004-12-28 03:49 tan2
* visual/combine.py: renamed some variables and changed the
doc_string
2004-12-03 04:23 tan2
* pyre/CoupledApp.py, pyre/SimpleApp.py: 1. In findLayput(),
assing self.controller 2. In CoupledApp, two controllers are
created. So, two controllers can have different output interval
(monitoringFrequency).
2004-11-25 05:47 ces74
* lib/Common/Advection_diffusion.c, lib/Common/Instructions.c,
lib/Common/global_defs.h, module/Regional/setProperties.cc,
pyre/Components/Advection_diffusion/Advection_diffusion.py: * a
new parameter, "filter_temperature" created as a memeber of the
"Control" structure. - if it's 1, the function filter() is
called to reduce artifical diffusioin. - it's 1 by default. *
The command line option for this parameter is "filter_temp" - it
belongs to the "Advection_diffusion" class, which is
instantiated as "tsolver" in Solver.py. - Usage:
--solver.tsolver.filter_temp=True/False
2004-11-16 19:43 steve
* module/Exchanger/Make.mm, module/Full/Make.mm,
module/Regional/Make.mm: made where to find pyre, etc a little
more generic
2004-11-09 07:21 ces74
* visual/miff2avi, visual/miff2mpg: * added appropriate credits
for these scripts.
2004-11-07 08:41 ces74
* visual/miff2avi, visual/miff2mpg: * scripts to make a movie out
of images generated by OpenDX -- mjpeg tools are necessary to
run.
2004-10-08 07:28 tan2
* pyre/Solver/Solver.py: don't use exchanger.initTemperature()
when restart (use disk file for IC)
2004-10-08 07:25 tan2
* lib/Common/Process_buoyancy.c: disable writing out surface hear
flux information, for processor on the surface usually don't
have E->fp ready to use.
2004-10-08 07:21 tan2
* lib/Common/Construct_arrays.c: get_bcs_id_for_residual() is
version independent. Move from Boundary_conditions.c to
Common/Construct_arrays.c
2004-10-08 07:20 tan2
* lib/Common/global_defs.h: temperatures_conform_bcs() is version
(Full/Regional) dependent. Make a function pointer for it.
2004-10-08 07:18 tan2
* lib/Full/Boundary_conditions.c,
lib/Regional/Boundary_conditions.c: 1.
temperatures_conform_bcs() is version (Full/Regional) dependent.
Make a function pointer for it. 2. get_bcs_id_for_residual() is
version independent. Move to Common/Construct_arrays.c
2004-10-08 07:11 tan2
* module/Exchanger/SVTInlet.cc, module/Exchanger/TInlet.cc,
module/Exchanger/VTInlet.cc,
module/Exchanger/initTemperature.cc: 1.
temperatures_conform_bcs() is version (Full/Regional) dependent.
Make a function pointer for it. 2. in initTemperature.cc, add
several new functions of different IC.
2004-10-08 07:08 tan2
* module/Exchanger/Boundary.cc: 1. fixed a bug: normalFlag was not
init'd correctly 2. when excludeBottom is true, bottome edge
nodes are still included
2004-09-23 04:31 ces74
* visual/OpenDXMacro/CitcomSSurfaceHeatflux.net,
visual/OpenDXMacro/CitcomSSurfaceImport.net,
visual/OpenDXMacro/CitcomSSurfaceTopo.net,
visual/OpenDXMacro/CitcomSSurfaceVelocity.net,
visual/OpenDXMacro/RTFtoXYZ2D.net,
visual/OpenDXMacro/VelocityRTFtoXYZ2D.net,
visual/visRegionalSurface.cfg, visual/visRegionalSurface.net: *
OpenDX macros and a new visual program for surface data.
2004-09-22 07:16 ces74
* visual/combinesurf.py: * fixed a bug related to the loop over
the surface procs for each cap.
2004-09-22 06:44 ces74
* visual/batchsurf.py, visual/getcoord.sh: * fixed bugs related to
generating a list of surface processors.
2004-08-10 07:22 tan2
* lib/Common/Initial_temperature.c: Print restart filename to
logfile
2004-08-08 05:08 tan2
* pyre/Components/Exchanger/Exchanger.py, pyre/Controller.py,
pyre/Coupler.py, pyre/Solver/Solver.py: Synchronized when to
save the result. During a coupled run, when one solver saves the
result, the other solver will save too.
2004-08-07 06:25 tan2
* visual/batchsurf.py: the 1st argument can be either the name of
machine file or a quoted machine list(eg. 'n101 n102').
2004-08-07 06:24 tan2
* visual/combinesurf.py: fixed quite a few bugs. this script is
working correctly.
2004-08-07 05:47 tan2
* pyre/Components/Exchanger/FineGridExchanger.py: VTOutlet was
used in creatII, TOutlet is used now.
2004-08-07 03:22 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py: nailed down a
big bug. VTInlet was used in creatII, which set temperature bc
flag for all interior nodes. TInlet is used now.
2004-08-05 01:29 tan2
* visual/OpenDXMacro/CitcomSFullImport.net: fixed a bug which
incorrectly set cap_start=0
2004-08-04 03:11 tan2
* module/Regional/setProperties.cc, pyre/Components/Const.py:
changed the units of depth parameters to be nondimensional, so
that they are consistent with original CitcomS input format
2004-08-02 23:34 ces74
* pyre/Components/Stokes_solver/Incompressible.py: * some
parameters that were hardwired can have user-defined values now.
2004-07-29 00:39 tan2
* visual/visFull.cfg, visual/visFull.net, visual/visRegional.cfg,
visual/visRegional.net: * use the same colormap for temperature
cross-section and isosurfaces.
2004-07-28 01:19 tan2
* module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/AreaWeightedNormal.h: * Change of
implementation. Now the weighted normal vectors are taken from
CitcomS' internal data (from boundary determinant
E->boundary.det, this array has been throughly tested), no
needto compute them again. Havn't tested.
2004-07-28 01:14 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h: *
Fixed a problem in initBBox(). It used to returned a tight
boundingbox. So, when excludeTop or excludeBottom is set, the
outer and inner radii are not the correct outer and inner radii
of the mesh. This can cause confusion and problem in other part
of program. * Added a new attribute, bnode. It is the index
mapping from CitcomS' node # to Boundary's node #.
2004-07-27 06:56 tan2
* visual/batchcombine.py: * the 1st argument can be either the
name of machine file or a quoted machine list(eg. 'n101 n102').
* modified the doc string
2004-07-09 01:15 tan2
* lib/Common/Problem_related.c, lib/Full/Lith_age.c,
lib/Full/Read_input_from_files.c, lib/Regional/Lith_age.c,
lib/Regional/Read_input_from_files.c: Previousely, CitcomS would
abort running when age < -1 Ma. This behavior is not desirable.
The following fixes change the behavior so that CitcomS will
assume age=0 when time has passed present day. 1.
find_age_in_MY() returns negative age when time has passed
present day 2. changed how age is manipulated before reading
age-dependet files
2004-07-06 13:32 patrick
* doc/CitComS.doxyconf, doc/Exchanger.doxyconf: * Renamed
Exchanger.doxyconf to CitComS.doxyconf * Set the tags to work
properly
2004-07-03 03:47 tan2
* module/Exchanger/global_bbox.cc: Fixed a bug in
fullGlobalBoundedBox(). The first and second dimension of bbox
are swapped. This bug makes the interpolator skip some nodes.
2004-06-30 03:25 tan2
* examples/Cookbook3, examples/Cookbook3/cookbook3.sh: example of
temperature-dependent viscosity
2004-06-30 00:25 tan2
* examples/Cookbook1, examples/Cookbook1/cookbook1.sh,
examples/Cookbook2, examples/Cookbook2/cookbook2.sh,
examples/example1.sh: more example scripts
2004-06-29 06:04 tan2
* tests/.cvsignore: tell cvs to ignore output files of test scripts
2004-06-29 05:58 tan2
* lib/Full/Lith_age.c, lib/Regional/Lith_age.c: calling
temperatures_conform_bcs() after init'ed restarted temperature
field
2004-06-29 05:29 tan2
* lib/Full/Lith_age.c: similar changes as in Regional/Lith_age.c
2004-06-29 04:20 tan2
* lib/Regional/Lith_age.c: 1. fix a bug when init'ing temperature
2. read lith_age_file in lith_age_init()
2004-06-29 02:56 tan2
* drivers/Full/Make.mm, drivers/Regional/Make.mm: changed export
rule so that mm will create symbolic links of binary executables
in $EXPORT_ROOT/bin
2004-06-29 02:54 tan2
* module/Regional/mesher.cc: calling lith_age_init() in
mehser_init()
2004-06-29 02:53 tan2
* lib/Common/Instructions.c, lib/Common/lith_age.h,
lib/Regional/Lith_age.c: 1. moved initialization of lith_age to
lith_age_init() 2. calling lith_age_init() in read_instructions()
2004-06-29 02:49 tan2
* lib/Regional/Boundary_conditions.c: called
temperatures_conform_bcs() after setting tbc
2004-06-29 01:36 tan2
* lib/Common/Pan_problem_misc_functions.c: bug fix
2004-06-29 01:10 tan2
* examples/example1.sh: typos fixed
2004-06-27 08:04 tan2
* module/Regional/initial_conditions.cc: enable lith_age support
2004-06-27 08:03 tan2
* lib/Regional/Lith_age.c: fixed a 'access unallocated memory' bug
2004-06-27 07:59 tan2
* lib/Common/Initial_temperature.c,
lib/Common/initial_temperature.h: added declaration of
restart_tic() and restart_tic() in header
2004-06-26 03:06 tan2
* visual/visFull.cfg, visual/visFull.net: 1. show (reduced)
surface grid 2. make rotating the Plane easier
2004-06-26 01:50 tan2
* visual/visFull.cfg, visual/visFull.net: new OpenDX network for
CitcomS Full
2004-06-26 01:49 tan2
* visual/visRegional.cfg, visual/visRegional.net: 1. import
viscosity 2. changed names of transmitters/receivers
2004-06-26 01:48 tan2
* visual/OpenDXMacro/CitcomSFullImport.net,
visual/OpenDXMacro/CitcomSImport.net,
visual/OpenDXMacro/CitcomSViscosity.net: added viscosity import
2004-06-26 01:28 tan2
* visual/samples/fulltest.cap0.0,
visual/samples/fulltest.cap0.0.general,
visual/samples/fulltest.cap1.0,
visual/samples/fulltest.cap1.0.general,
visual/samples/fulltest.cap10.0,
visual/samples/fulltest.cap10.0.general,
visual/samples/fulltest.cap11.0,
visual/samples/fulltest.cap11.0.general,
visual/samples/fulltest.cap2.0,
visual/samples/fulltest.cap2.0.general,
visual/samples/fulltest.cap3.0,
visual/samples/fulltest.cap3.0.general,
visual/samples/fulltest.cap4.0,
visual/samples/fulltest.cap4.0.general,
visual/samples/fulltest.cap5.0,
visual/samples/fulltest.cap5.0.general,
visual/samples/fulltest.cap6.0,
visual/samples/fulltest.cap6.0.general,
visual/samples/fulltest.cap7.0,
visual/samples/fulltest.cap7.0.general,
visual/samples/fulltest.cap8.0,
visual/samples/fulltest.cap8.0.general,
visual/samples/fulltest.cap9.0,
visual/samples/fulltest.cap9.0.general: added sample data file
of CitcomS Full
2004-06-25 02:38 tan2
* examples/example1.sh: first example for Cookbook
2005-08-23 03:32 unknown_user
* examples/Full/Make.mm, examples/Full/local.def,
examples/Make.mm, examples/Regional/Make.mm,
examples/Regional/local.def, examples/local.def: [vcp] delete of
edited revision with dead state
2004-06-25 02:31 tan2
* Make.mm, examples/Full/Make.mm, examples/Full/local.def,
examples/Make.mm, examples/Regional/Make.mm,
examples/Regional/local.def, examples/local.def: removed
makefiles in examples/
2004-06-25 02:26 tan2
* pyre/Solver/Solver.py: new default value for Rayleight number
2004-06-25 02:25 tan2
* pyre/Components/Sphere/RegionalSphere.py: new default values for
domain size
2004-06-25 02:24 tan2
* pyre/Components/IC.py: new default values, number of initial
temperature perturbation is default to 1, perturbl and perturbm
to 1, perturblayer to 5.
2004-06-12 03:14 tan2
* module/Exchanger/Make.mm, module/Full/Make.mm,
module/Regional/Make.mm: modified library and include pathes
2004-06-11 06:07 tan2
* visual/visRegional.cfg, visual/visRegional.net: 1. added integer
interactor to control the cutting dimension of Slab 2. made the
names of interactor more descriptive 3. set the min of slab
cutting position to 0 4. set the min and max of slab Autocolor
to 0 and 1, respectively
2004-06-09 00:40 tan2
* module/Full/.cvsignore: tell cvs to ignore linked source codes
in this directory
2004-06-09 00:32 tan2
* lib/Common/Output.c: disable pressure and stress output
2004-06-08 08:35 tan2
* visual/batchsurf.py, visual/combinesurf.py,
visual/dxgeneralsurf.sh, visual/getsurf.sh: scripts to get back
and combine the surf file (containing x, y, topography,
heatflux, vx, vy)
2004-06-08 08:32 tan2
* visual/getcoord.sh: script to get the coord file
2004-06-08 05:29 tan2
* visual/batchcombine.py: changed the way to generate machine list
2004-06-08 04:51 tan2
* visual/batchpaste.sh: Removed hard-wired path. Users have to set
CitcomS/visual in their path.
2004-06-08 02:54 tan2
* visual/batchcombine.py: removed debugging output
2004-06-08 02:45 tan2
* visual/batchcombine.py: When the length of machinefile mismatch
the number of processors, the script will give a warging and try
to match number of processors by applying machinefile multiple
times.
2004-06-03 04:49 tan2
* citcoms_profile: environment variables for Pyre-ized CitcomS
package. Users need to modify $GEOFRAMEWORK to the installation
path
2004-06-03 03:30 tan2
* module/Exchanger/misc.cc: remove unused header file
2004-06-03 03:28 tan2
* module/Exchanger/exchangers.cc: fixed a bug in passing int when
*int is expected
2004-06-03 03:27 tan2
* module/Exchanger/Boundary.cc: enable journal output
2004-06-03 03:23 tan2
* module/Exchanger/CitcomInterpolator.cc: throw an exception if
selfTest() is failed
2004-06-02 06:59 tan2
* Make.mm, local.def: remove incorrect copyright listing
2004-05-29 08:19 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: 1. added new
boolean property 'two_way_communication' in Exchanger.py. If it
is false, communication is only one way (coarse to fine). 2.
added new boolean properties 'excludeTop' and 'excludeBottom' in
FineGridExchanger.py. These two are new construtor arguments of
Boundary class.
2004-05-29 04:26 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/exchangers.cc: 1. Boundary can be constucted
without top or bottom surfaces. This is done through two c'tor
argument 'bool excludeTop, excludeBottom'. 2. disable journal
2004-05-27 06:56 tan2
* module/Regional/bindings.cc, module/Regional/misc.cc,
module/Regional/misc.h: split 'BC_update_bc()' into
'Visc_update_material()' and 'BC_update_plate_velocity()'
2004-05-27 06:55 tan2
* pyre/Components/BC.py, pyre/Components/Visc.py,
pyre/Solver/Solver.py: split 'BC.updateBC()' into
'Visc.updateMaterial()' and 'BC.updatePlateVelocity()'
2004-05-27 06:53 tan2
* pyre/Components/Advection_diffusion/Advection_diffusion.py: made
"fixed_timestep" and "finetunedt" an inventory property (they
were ordinary class member).
2004-05-26 05:41 tan2
* visual/visRegional.net: using relative path to the data files
2004-05-26 05:34 tan2
* visual/visRegional.cfg, visual/visRegional.net: basic OpenDX
network script to visualize result from regional version of
CitcomS
2004-05-26 05:24 tan2
* visual/samples, visual/samples/regtest.cap0.0,
visual/samples/regtest.cap0.0.general: added new sample files
for visualization
2004-05-25 07:29 tan2
* module/Exchanger/CitcomSource.cc, module/Exchanger/SVTInlet.cc,
module/Exchanger/SVTOutlet.cc: journal is known to leak memory.
Commented out journal output before the leak is fixed.
2004-05-25 03:32 tan2
* module/Regional/bindings.cc, module/Regional/misc.cc,
module/Regional/misc.h, pyre/Components/BC.py,
pyre/Solver/Solver.py: added support to read vel_bc files at
every timestep
2004-05-25 03:30 tan2
* module/Regional/stokes_solver.cc: added function name in the
argument to PyArg_ParseTuple()
2004-05-25 03:27 tan2
* tests/.cvsignore: tell cvs to ignore files generated by citcoms
output
2004-05-25 02:59 tan2
* module/Exchanger/SVTInlet.cc: Two types of temperature b.c:
upwind/normal. In upwind bc, bc can be either fixed
temperature/heatflux depending on the direction of flow. In
normal bc, bc is always fixed temperature. After more testing, I
found normal bc works better than upwind bc.
2004-05-24 02:13 tan2
* lib/Common/Pan_problem_misc_functions.c: 'side_sbc' is
applicable in regional version only. add a sanity check here.
also remove some (incorrect) conditional #include
2004-05-24 02:10 tan2
* lib/Common/Topo_gravity.c, lib/Full/Boundary_conditions.c,
lib/Regional/Boundary_conditions.c: fully implemented
stress_conform_bcs() and moved it from Boundary_conditions.c to
Topo_gravity.c
2004-05-24 01:45 tan2
* examples/Regional/input.sample: add missing parameter
'perturblayer'
2004-05-19 04:21 ces74
* module/Exchanger/Make.mm, module/Exchanger/bindings.cc,
module/Exchanger/inlets_outlets.cc: * bindings for VOutlet,
which sends only the velocity to a sink.
2004-05-19 04:18 ces74
* module/Exchanger/VOutlet.cc, module/Exchanger/VOutlet.h,
module/Exchanger/inlets_outlets.h: * Binding for VOutlet
created: this send only the velocity to a sink.
2004-05-19 04:15 ces74
* pyre/Components/Exchanger/Outlet.py: * a class added for
exchanging only the velocity.
2004-05-19 03:40 tan2
* visual/OpenDXMacro/ScaledGlyphs.net: macro that takes two data
and plot them as two glyphs that has the same size (eg. length
of arrow) scale. The shape (eg. the thickness of arrow) cannot
be scaled automaticly though.
2004-05-19 03:38 tan2
* visual/OpenDXMacro/ShowSphere.net: input1: origin of sphere;
default=[0 0 0] input2: radius of sphere; default=0.5 output:
sphere object
2004-05-13 02:10 patrick
* doc/Exchanger.doxyconf: * Updated the package name in the
Doxygen docs
2004-05-13 02:05 tan2
* visual/OpenDXMacro/CitcomSFullImport.net: Added two more inputs.
One is an integer indicating the starting cap number. The other
is an integer indicating the ending cap number. The default is
0-11, ie. all caps. If you wanna plot some specific caps only,
change these two values.
2004-05-13 02:01 tan2
* visual/dxgeneral.sh: Changed the order of 'grid'. Now it is YXZ.
Don't know why, but the old XYZ ordering doesn't work.
2004-05-12 02:32 tan2
* visual/OpenDXMacro, visual/OpenDXMacro/CitcomSFullImport.net,
visual/OpenDXMacro/CitcomSImport.net,
visual/OpenDXMacro/CitcomSTemperature.net,
visual/OpenDXMacro/CitcomSVelocity.net,
visual/OpenDXMacro/RTFtoXYZ.net,
visual/OpenDXMacro/VelocityRTFtoXYZ.net: * OpenDX macros for
importing CitcomS data file * how to use: 1. create the 'cap'
files and '.general' files using scripts in CitcomS/visual/
directory. 2. use CitcomSImport to import single cap-file. use
CitcomSFullImport to import 12 cap-files.
2005-08-23 03:30 unknown_user
* module/Exchanger/TractionInlet.cc,
module/Exchanger/TractionInlet.h,
module/Exchanger/TractionOutlet.cc,
module/Exchanger/TractionOutlet.h: [vcp] delete of edited
revision with dead state
2004-05-12 01:36 tan2
* module/Exchanger/TractionInlet.cc,
module/Exchanger/TractionInlet.h,
module/Exchanger/TractionOutlet.cc,
module/Exchanger/TractionOutlet.h: obsolete classes
2004-05-12 01:35 tan2
* module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/AreaWeightedNormal.h,
module/Exchanger/BoundaryVTInlet.cc,
module/Exchanger/BoundaryVTInlet.h: modified these classes using
new base exchanger. these classes are not used currently and I
didn't write any binding for them.
2004-05-11 14:59 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
pyre/Components/Exchanger/Inlet.py,
pyre/Components/Exchanger/Outlet.py: * using new c++ class
hierarchy
2005-08-23 03:30 unknown_user
* module/Exchanger/AbstractSource.cc,
module/Exchanger/AbstractSource.h, module/Exchanger/Array2D.cc,
module/Exchanger/Array2D.h, module/Exchanger/BoundedBox.cc,
module/Exchanger/BoundedBox.h, module/Exchanger/BoundedMesh.cc,
module/Exchanger/BoundedMesh.h,
module/Exchanger/CartesianCoord.cc,
module/Exchanger/CartesianCoord.h, module/Exchanger/DIM.h,
module/Exchanger/FEMInterpolator.cc,
module/Exchanger/FEMInterpolator.h, module/Exchanger/Inlet.cc,
module/Exchanger/Inlet.h, module/Exchanger/Outlet.cc,
module/Exchanger/Outlet.h, module/Exchanger/Sink.cc,
module/Exchanger/Sink.h,
module/Exchanger/TractionInterpolator.cc,
module/Exchanger/TractionInterpolator.h,
module/Exchanger/TractionSource.cc,
module/Exchanger/TractionSource.h,
module/Exchanger/VTInterpolator.cc,
module/Exchanger/VTInterpolator.h, module/Exchanger/VTSource.cc,
module/Exchanger/VTSource.h, module/Exchanger/utilTemplate.cc,
module/Exchanger/utilTemplate.h, module/Exchanger/utility.cc,
module/Exchanger/utility.h: [vcp] delete of edited revision with
dead state
2004-05-11 14:55 tan2
* module/Exchanger/AbstractSource.cc,
module/Exchanger/AbstractSource.h, module/Exchanger/Array2D.cc,
module/Exchanger/Array2D.h, module/Exchanger/Boundary.cc,
module/Exchanger/Boundary.h, module/Exchanger/BoundedBox.cc,
module/Exchanger/BoundedBox.h, module/Exchanger/BoundedMesh.cc,
module/Exchanger/BoundedMesh.h,
module/Exchanger/CartesianCoord.cc,
module/Exchanger/CartesianCoord.h,
module/Exchanger/CitcomInterpolator.cc,
module/Exchanger/CitcomInterpolator.h,
module/Exchanger/CitcomSource.cc,
module/Exchanger/CitcomSource.h, module/Exchanger/Convertor.cc,
module/Exchanger/Convertor.h, module/Exchanger/DIM.h,
module/Exchanger/FEMInterpolator.cc,
module/Exchanger/FEMInterpolator.h, module/Exchanger/Inlet.cc,
module/Exchanger/Inlet.h, module/Exchanger/Interior.cc,
module/Exchanger/Interior.h, module/Exchanger/Make.mm,
module/Exchanger/Outlet.cc, module/Exchanger/Outlet.h,
module/Exchanger/SIUnit.cc, module/Exchanger/SIUnit.h,
module/Exchanger/SVTInlet.cc, module/Exchanger/SVTInlet.h,
module/Exchanger/SVTOutlet.cc, module/Exchanger/SVTOutlet.h,
module/Exchanger/Sink.cc, module/Exchanger/Sink.h,
module/Exchanger/TInlet.cc, module/Exchanger/TInlet.h,
module/Exchanger/TOutlet.cc, module/Exchanger/TOutlet.h,
module/Exchanger/TractionInterpolator.cc,
module/Exchanger/TractionInterpolator.h,
module/Exchanger/TractionSource.cc,
module/Exchanger/TractionSource.h, module/Exchanger/VTInlet.cc,
module/Exchanger/VTInlet.h, module/Exchanger/VTInterpolator.cc,
module/Exchanger/VTInterpolator.h, module/Exchanger/VTOutlet.cc,
module/Exchanger/VTOutlet.h, module/Exchanger/VTSource.cc,
module/Exchanger/VTSource.h, module/Exchanger/bindings.cc,
module/Exchanger/bindings.h, module/Exchanger/exceptions.h,
module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h,
module/Exchanger/global_bbox.cc, module/Exchanger/global_bbox.h,
module/Exchanger/initTemperature.cc,
module/Exchanger/initTemperature.h,
module/Exchanger/inlets_outlets.cc,
module/Exchanger/inlets_outlets.h, module/Exchanger/misc.cc,
module/Exchanger/misc.h, module/Exchanger/utilTemplate.cc,
module/Exchanger/utilTemplate.h, module/Exchanger/utility.cc,
module/Exchanger/utility.h: * New class hierarchy. All base
classes are moved to packages/Exchanger, so does
non-CitcomS-specific utility classes. * Removed 'mode' argument
in VTInlet and VTOutlet c'tors. Every Inlet and Outlet class is
reponsible for only one job. * Merged all Interpolator into
CitcomInterpolator * Merged all Source into CitcomSource
2004-05-08 01:44 tan2
* module/Exchanger/SVTInlet.cc: impose temperature b.c. when flow
is toward into my domain. Otherwise, impose no-heatflux b.c.
2004-05-08 01:41 tan2
* module/Exchanger/misc.cc: changed default initial temperature
field -- a hot spherical blob below the fine mesh
2004-05-01 01:41 tan2
* module/Exchanger/Sink.cc: added another self test. This test
will make sure that every mesh node is interpolated.
2004-04-30 05:19 tan2
* lib/Common/Instructions.c: remove debug print out
2004-04-30 04:41 tan2
* module/Exchanger/SVTInlet.cc: implemented imposeSV(), passed
benchmark.
2004-04-30 04:36 tan2
* module/Exchanger/VTInterpolator.cc: fixed a bug in accessing
E->gstress array
2004-04-30 04:35 tan2
* lib/Common/Topo_gravity.c, lib/Full/Boundary_conditions.c,
lib/Regional/Boundary_conditions.c: After stress is calculated,
replace stress of boundary nodes with boundary conditions (if
stress BC is specified). This is partially done in Regional
version (if E->control.side_sbcs is on, should use different bc
arrays). Not implemented in Full version.
2004-04-30 03:40 patrick
* doc, doc/.cvsignore, doc/Exchanger.doxyconf: Commiting Doxygen
config file to build the documents for the exchanger
2004-04-29 07:23 tan2
* pyre/Components/BC.py: side_sbcs default to False
* lib/Common/Instructions.c: E->control.side_sbcs default to 0
2004-04-29 07:21 tan2
* lib/Common/Output.c: added new function output_stress()
2004-04-29 07:13 tan2
* lib/Regional/Version_dependent.c: added some comment for initial
temperature in spherical harmonic for future reference
2005-08-23 03:29 unknown_user
* tests/citcomsfull.py, tests/citcomsregional.py,
tests/coupledcitcoms.py: [vcp] delete of edited revision with
dead state
2004-04-24 05:15 tan2
* tests/citcomsfull.py, tests/citcomsfull.sh,
tests/citcomsregional.py, tests/citcomsregional.sh,
tests/coupledcitcoms.py, tests/coupledcitcoms.sh: update the
scripts that executes pyreized versions
2004-04-24 04:15 tan2
* drivers/Regional/Make.mm: export binary executable
2004-04-23 03:52 tan2
* drivers/Full/Make.mm: export binary
2004-04-17 02:12 tan2
* lib/Common/Pan_problem_misc_functions.c: bug fix
2004-04-16 08:17 tan2
* module/Regional/setProperties.cc, pyre/Components/BC.py: add
'side_sbcs' to property list
2004-04-16 07:08 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: use SVTInlet and
SVTOutlet as BC
2004-04-16 07:05 tan2
* pyre/Components/Exchanger/Inlet.py,
pyre/Components/Exchanger/Outlet.py: add SVTOutlet and SVTInlet
classes and their bindings. These classes are for
CitcomS-CitcomS coupling, b.c. with temperature, normal velocity
and shear traction
2004-04-16 07:03 tan2
* module/Exchanger/Make.mm, module/Exchanger/SVTInlet.cc,
module/Exchanger/SVTInlet.h, module/Exchanger/SVTOutlet.cc,
module/Exchanger/SVTOutlet.h, module/Exchanger/bindings.cc,
module/Exchanger/inlets_outlets.cc,
module/Exchanger/inlets_outlets.h: add SVTOutlet and SVTInlet
classes and their bindings. These classes are for
CitcomS-CitcomS coupling, b.c. with temperature, normal velocity
and shear traction
2004-04-16 07:01 tan2
* module/Exchanger/VTSource.cc: add some journal debug output
2004-04-16 01:39 tan2
* lib/Common/Topo_gravity.c,
module/Exchanger/TractionInterpolator.cc: rearranged the order
of stress vector so that it conforms with Hugh's convention | 1
4 5 | stress =| 4 2 6 | | 5 6 3 |
2004-04-16 01:35 tan2
* lib/Common/Make.mm, lib/Common/Process_velocity.c: remove the
empty file, Process_velocity.c, from the repository
2004-04-16 01:33 tan2
* lib/Common/Obsolete.c, lib/Common/Process_velocity.c,
lib/Common/Topo_gravity.c: 1. move get_surf_stress() from
Process_velocity.c to Topo_gravity.c 2. move get_ele_visc() from
Process_velocity.c to Obsolete.c
2004-04-15 03:12 tan2
* module/Exchanger/VTSource.cc, module/Exchanger/VTSource.h:
implement interpolateStress()
2004-04-15 03:06 tan2
* module/Exchanger/VTInterpolator.cc,
module/Exchanger/VTInterpolator.h: implement interpolateStress()
2004-04-15 02:41 tan2
* module/Exchanger/AbstractSource.h, module/Exchanger/DIM.h,
module/Exchanger/FEMInterpolator.h,
module/Exchanger/TractionInterpolator.h,
module/Exchanger/TractionSource.h,
module/Exchanger/VTInterpolator.h, module/Exchanger/VTSource.h:
1. add a new constant, 'STRESS_DIM', for the dimension of stress
(=6 in 3D) 2. in Interpolator and Source, stress has correct
dimension now 3. add virtual function 'interpolateDisplacement'
in Source
2004-04-15 01:29 tan2
* lib/Common/Element_calculations.c, lib/Common/Instructions.c,
lib/Common/Pan_problem_misc_functions.c,
lib/Common/global_defs.h, lib/Full/Boundary_conditions.c,
lib/Regional/Boundary_conditions.c: convert b.c. data structure
to support traction b.c. on all sides of a element
2004-04-13 06:30 tan2
* lib/Common/Element_calculations.c: bug fix
2004-04-13 06:23 tan2
* lib/Common/Element_calculations.c: modify get_elt_tr() so that
it computes traction per side, not per element. Also, some minor
speed improvement.
2004-04-10 08:05 tan2
* module/Exchanger/TractionInterpolator.cc: changes in interfaces
of construct_side_c3x3matrix_el() and
get_global_side_1d_shape_fn()
2004-04-10 08:03 tan2
* lib/Common/Size_does_matter.c: change the interface of
get_global_side_1d_shape_fn(): NS and far is replaced by side
2004-04-10 07:49 tan2
* lib/Common/Element_calculations.c,
lib/Common/Size_does_matter.c: 1. change interface of
construct_side_c3x3matrix_el(): NS, far is replaced by side 2.
in get_elt_tr(), traction is only imposed on top/bottom sides
(will relax this constraint later)
2004-04-10 07:00 tan2
* lib/Common/Element_calculations.c: bug fix
2004-04-10 06:56 tan2
* lib/Common/Element_calculations.c, lib/Common/Obsolete.c: move
get_elt_h() from Element_calculations.c to Obsolete.c
2004-04-10 06:31 tan2
* lib/Common/Element_calculations.c: 1. finished get_elt_tr(),
which computes RHS vector contributed to traction b.c. 2. remove
declaration of unused variables
2004-04-10 06:20 tan2
* lib/Common/Size_does_matter.c: 1. finished construct_bdry_det()
2. modify other functions related to sides 3. remove declaration
unused variables
2004-04-10 06:19 tan2
* lib/Common/element_definitions.h: add/change side definition
2004-04-10 02:05 tan2
* lib/Common/Element_calculations.c: fixed a bug in calculating
RHS force vector due to boundary velocity
2004-04-10 01:39 tan2
* lib/Common/Element_calculations.c: undo previous (uninit'd
memory) bug fix -- it is not a bug
2004-04-09 07:13 tan2
* lib/Common/Element_calculations.c: fixed a bug in initializing
array
2004-04-06 02:36 tan2
* module/Exchanger/FEMInterpolator.cc: minor modification to
previous check-in
2004-04-05 06:03 tan2
* module/Exchanger/FEMInterpolator.cc: sometimes after coordinate
conversion, surface nodes of different solvers won't line up,
need this special treatment -- if x is a little bit above my top
surface, move it back to the surface
2004-03-29 07:31 tan2
* module/Regional/mesher.cc: in sphere_launch(), call
construct_bdry_det() to compute (6-side) surface determinants of
boundary elements
2004-03-29 07:22 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: usage of
VTOutlet and VTInlet is replaced by TractionInlet and
TractionOutlet. Goal: impose normal velocity and shear traction
as bounary conditions
2004-03-29 07:20 tan2
* pyre/Components/Exchanger/Inlet.py: bug fix
2004-03-29 07:19 tan2
* module/Exchanger/TractionInterpolator.cc,
module/Exchanger/TractionInterpolator.h,
module/Exchanger/TractionOutlet.cc,
module/Exchanger/TractionOutlet.h,
module/Exchanger/TractionSource.cc,
module/Exchanger/TractionSource.h,
module/Exchanger/exchangers.cc: 1. TractionOutlet c'tor has a
new argument to specify 'mode'. Avaiable modes are: 'F': send
traction only 'V": send velocity only (this is somewhat
duplicated with VTOutlet) 'FV": send both traction and velocity
2. TractionSource and TractionInterpolateor have to know how to
interpolate velocity (because of 1) 3. remove domian_cutout() 4.
restructure TractionInterpolateor class to reuse CitcomS library
2004-03-29 07:05 tan2
* module/Exchanger/bindings.cc: add bindings to TractionOutlet and
TractionInlet
* module/Exchanger/Make.mm, module/Exchanger/TractionInlet.cc,
module/Exchanger/TractionInlet.h,
module/Exchanger/inlets_outlets.cc,
module/Exchanger/inlets_outlets.h: add new class TractionInlet
and its bindings
2004-03-29 07:01 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h:
send/recv/broadcast normal array as well
2004-03-27 08:10 steve
* module/Exchanger/Make.mm: changed from $TOOLS_DIR/lib to
$TOOL_LIBDIR
2004-03-27 08:04 tan2
* lib/Common/Element_calculations.c: 1. extract repeated codes to
a new function add_force() 2. remove unused variables 3. add new
function to compute RHS of momemtum eqn due to traction b.c.
(not finished yet)
2004-03-27 07:42 tan2
* lib/Common/Size_does_matter.c: 1. move
get_global_1d_shape_fn_1() form Size_does_matter.c to Obsolete.c
2. add new function construct_bdry_det() to compute (6-side)
surface determinant of boundary element 3. isolate some repeated
codes to new function get_x_cart()
2004-03-27 07:41 tan2
* lib/Common/Obsolete.c: move get_global_1d_shape_fn_1() form
Size_does_matter.c to Obsolete.c
2004-03-27 07:39 tan2
* lib/Common/element_definitions.h: add a section defines the
ordering of the 6 surfaces of a element and the ordering of 4
nodes within each surface
* lib/Common/global_defs.h: add definition of new structure Bdry
and declaration of E->boundary. This structure is used to mark
boundary element and store its (6-side) surface determinants
2004-03-27 07:36 tan2
* lib/Full/Version_dependent.c, lib/Regional/Version_dependent.c:
1. add new function construct_boundary() to find boundary
elements 2. fix bug in using fscanf() 3. remove unused variables
2004-03-27 01:53 tan2
* lib/Common/Instructions.c: 'read uninitialized value' bug fixed
2004-03-26 06:45 tan2
* lib/Common/Tracer_advection.c: minor bug fixed
2004-03-26 06:42 tan2
* lib/Regional/Sphere_related.c: minor bug fixed
2004-03-25 04:14 tan2
* lib/Common/Instructions.c: *** empty log message ***
2004-03-25 04:13 tan2
* lib/Common/Convection.c, lib/Common/Instructions.c: input of
Rayleigh number is moved
2004-03-17 07:17 tan2
* lib/Common/Topo_gravity.c, lib/Common/global_defs.h,
lib/Full/Parallel_related.c, lib/Regional/Parallel_related.c: 1.
add function pointers void (* exchange_node_d) and void (*
exchange_node_f) in struct All_variables 2. replace calls to
exchange_node_d() by void (* exchange_node_d) in Topo_gravity.c.
Because exchange_node_d() is version dependent and can't be
called from Exchanger.
2004-03-17 05:07 tan2
* module/Regional/mesher.cc: construct surface arrays and compute
surface determinant
2004-03-17 05:03 tan2
* lib/Common/Construct_arrays.c, lib/Common/Instructions.c,
lib/Common/Size_does_matter.c: 1. construct surface node and
element array for bookkeeping 2. compute surface determinant
2004-03-14 07:11 tan2
* lib/Common/Size_does_matter.c: remove debugging print out
2004-03-13 07:13 tan2
* lib/Common/Topo_gravity.c: another bug fix
2004-03-13 07:05 tan2
* lib/Common/Topo_gravity.c: restructure function get_STD_topo()
* lib/Common/Output.c: bug fix
2004-03-13 07:01 tan2
* lib/Common/Output.c: isolate calculation and output of
horizontal average into one function
2004-03-12 07:25 tan2
* pyre/Components/Exchanger/Inlet.py,
pyre/Components/Exchanger/Outlet.py: 1. add TractionInlet class
2. simplified bindings for inlets and outlets
2004-03-12 07:23 tan2
* module/Exchanger/bindings.cc,
module/Exchanger/inlets_outlets.cc,
module/Exchanger/inlets_outlets.h: simplified bindings to inlets
and outlets
2004-03-12 06:50 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h: add
attribute 'normal_' to indicate the direction of outward normal
on each node.
2004-03-12 06:46 tan2
* module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: remove obsolete bindings
2004-03-12 06:42 tan2
* module/Exchanger/Sink.cc, module/Exchanger/VTInlet.cc: bug fixed
2004-03-12 06:36 tan2
* module/Exchanger/Sink.h, module/Exchanger/VTInlet.cc: change
method name: 'recvArray2D' --> 'recv'
2005-08-23 03:27 unknown_user
* module/Exchanger/BoundaryCondition.cc,
module/Exchanger/BoundaryCondition.h,
module/Exchanger/InteriorImposing.cc,
module/Exchanger/InteriorImposing.h, module/Exchanger/Source.cc,
module/Exchanger/Source.h, module/Exchanger/TractionBC.cc,
module/Exchanger/TractionBC.h: [vcp] delete of edited revision
with dead state
2004-03-12 06:22 tan2
* module/Exchanger/BoundaryCondition.cc,
module/Exchanger/BoundaryCondition.h,
module/Exchanger/InteriorImposing.cc,
module/Exchanger/InteriorImposing.h, module/Exchanger/Make.mm,
module/Exchanger/Source.cc, module/Exchanger/Source.h,
module/Exchanger/TractionBC.cc, module/Exchanger/TractionBC.h:
remove obsolete files
2004-03-11 09:07 tan2
* pyre/Components/Exchanger/Inlet.py: method 'storeTimestep' is
moved up to the parent class
2004-03-11 09:06 tan2
* module/Exchanger/Inlet.cc, module/Exchanger/Inlet.h,
module/Exchanger/VTInlet.cc, module/Exchanger/VTInlet.h,
module/Exchanger/bindings.cc,
module/Exchanger/inlets_outlets.cc,
module/Exchanger/inlets_outlets.h: 1. move attributes 'fge_t'
and 'cge_t', methods 'storeTimestep' and 'getFactor' from
VTInlet to Inlet. 2. change the binding accordingly
2004-02-27 07:04 tan2
* module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/initTemperature.cc,
module/Exchanger/initTemperature.h: delete
initTemperatureSource(), initTemperatureSink() and their
bindings.
2004-02-27 06:29 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: use Inlet and
Outlet
* pyre/Components/Exchanger/Inlet.py,
pyre/Components/Exchanger/Make.mm,
pyre/Components/Exchanger/Outlet.py: add various classes for
exchanger
2004-02-27 03:27 tan2
* module/Exchanger/BoundedMesh.cc, module/Exchanger/BoundedMesh.h:
1. remove "before_send_bbox" and "converted_bbox" journal log 2.
add 'send' and 'recv' methods
2005-08-23 03:27 unknown_user
* module/Exchanger/InformationSourceSink.h: [vcp] delete of edited
revision with dead state
2004-02-26 07:29 tan2
* module/Exchanger/InformationSourceSink.h: obsolete (actually
never used), replaced by Inlet and Outlet classes.
2004-02-26 07:25 tan2
* pyre/Components/Exchanger/FineGridExchanger.py: activate
journal.info("incompressibility")
2004-02-26 07:24 tan2
* module/Exchanger/AreaWeightedNormal.cc: outputing outflow
information is moved to journal.info category
2004-02-26 07:07 tan2
* module/Exchanger/Make.mm: add AbstractSource.cc
* module/Exchanger/AbstractSource.cc,
module/Exchanger/AbstractSource.h,
module/Exchanger/TractionSource.cc,
module/Exchanger/TractionSource.h, module/Exchanger/VTSource.cc,
module/Exchanger/VTSource.h: 1. add AbstractSource.cc 2. move
initialization of TractionSource and VTSource to AbstractSource
2004-02-25 08:54 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: new Exchanger,
using inlets and outlets.
2004-02-25 04:40 tan2
* module/Exchanger/Make.mm: add new source files
2004-02-25 04:39 tan2
* module/Exchanger/bindings.cc: add bindings to various inlet and
outlet classes in method table
2004-02-25 04:37 tan2
* module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h:
move 'createVTSource' function to inlets_outlets.cc
2004-02-25 04:35 tan2
* module/Exchanger/inlets_outlets.cc,
module/Exchanger/inlets_outlets.h: bindings for various inlets
and outlets classes
2004-02-25 04:34 tan2
* module/Exchanger/BoundaryVTInlet.cc,
module/Exchanger/BoundaryVTInlet.h: class which consumes nodal
velocities and temperature and enforce imcompressibility
constraint, replacing BoundaryConditionSink class.
2004-02-25 04:26 tan2
* module/Exchanger/VTInlet.cc, module/Exchanger/VTInlet.h: class
which consuming nodal velocities and temperature, replacing
(part of) BoundaryConditionSink class.
2004-02-25 04:24 tan2
* module/Exchanger/VTOutlet.cc, module/Exchanger/VTOutlet.h: class
which provides nodal velocities and temperature, replacing (part
of) BoundaryConditionSource class.
2004-02-25 04:20 tan2
* module/Exchanger/VTSource.cc, module/Exchanger/VTSource.h: class
which sends velocity and temperature across the network,
replacing Source class.
2004-02-25 04:14 tan2
* module/Exchanger/TractionOutlet.cc,
module/Exchanger/TractionOutlet.h: class which provides nodal
traction, replacing TractionBC class.
2004-02-25 04:09 tan2
* module/Exchanger/FEMInterpolator.cc: small modification on
convergence criterion
2004-02-25 04:03 tan2
* module/Exchanger/Inlet.cc, module/Exchanger/Inlet.h,
module/Exchanger/Outlet.cc, module/Exchanger/Outlet.h: base
classes for send/receive/impose exchanged information
2004-02-12 07:34 ces74
* lib/Common/Output.c: Pressure output added
2004-02-07 07:28 tan2
* lib/Common/Output.c: increase number of digits for coordinate
and viscosity output
2004-02-06 04:17 tan2
* lib/Common/Initial_temperature.c,
lib/Common/convection_variables.h,
module/Regional/setProperties.cc: increase max. allowed # of
perturbations to 255
2004-02-06 03:56 tan2
* module/Regional/setProperties.cc: change echo format of
get*Property
2004-02-06 03:46 tan2
* module/Exchanger/misc.cc: allocate and init temperature boundary
condition flags
2004-02-06 03:45 tan2
* module/Exchanger/FEMInterpolator.cc, module/Exchanger/Sink.cc:
changes in journal log
2004-02-06 03:06 tan2
* pyre/Components/IC.py, pyre/Components/Visc.py: use
pyre.properties.list instead of pyre.properties.sequence for
several component properties because: 1. sequence only accepts
integer from command line input 2. list doesn't require '[]'
around command line input
2004-02-05 08:46 tan2
* visual/pasteCitcomData.sh: use space char. as field delimiter
instead of tab char.
2004-01-23 04:06 puru
* module/Exchanger/InteriorImposing.cc,
module/Exchanger/InteriorImposing.h: Temporarily setVBCFlag is
called inside recvV, which is computationally inefficient for
testing purpose.
2004-01-22 11:38 puru
* module/Exchanger/BoundedBox.cc: Corrected to include the case
when one bounded box completely subsumes the other boundedbox
2004-01-22 04:46 tan2
* module/Exchanger/AreaWeightedNormal.h: #include mpi.h in the
header
2004-01-22 02:09 tan2
* module/Exchanger/Source.h: #include BoundedBox.h in the header
2004-01-22 01:40 tan2
* module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/AreaWeightedNormal.h: remove Sink from the
arguement list of computeWeightedNormal()
2004-01-21 08:13 puru
* module/Exchanger/InteriorImposing.cc: A typo has been corrected
* module/Exchanger/exchangers.cc: Corrected a typo
2004-01-21 06:57 tan2
* module/Exchanger/misc.cc: 1. seperate codes that is in original
initTemperatureTest() to new functions: hot_blob(),
add_hot_blob() and debug_output() 2. add new function
five_hot_blob(), which put a hot blob in the center of bbox, and
4 hot blobs outside and around bbox.
2004-01-19 05:07 tan2
* module/Exchanger/FEMInterpolator.cc: add comments
2004-01-18 06:22 ces74
* module/Exchanger/TractionInterpolator.cc: a bug fixed in
traction calculation.
2004-01-17 10:10 puru
* module/Exchanger/InteriorImposing.cc,
module/Exchanger/InteriorImposing.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: Facility to impose velocity from
Snac to Citcom has been added.
2004-01-16 10:05 tan2
* module/Exchanger/FEMInterpolator.cc: revert to previous version
2004-01-16 09:50 tan2
* module/Exchanger/FEMInterpolator.cc: changes to make floating
point comparison friendly
2004-01-15 11:00 ces74
* module/Exchanger/TractionInterpolator.h: header file for
TractionInterpolator.cc
2004-01-15 10:59 ces74
* module/Exchanger/TractionBC.cc: converted fbc can be printed out
for debugging.
2004-01-15 09:04 ces74
* module/Exchanger/TractionInterpolator.cc: 1. in
initComputeTraction, bbox is now boundedMesh.tightBBox(). 2.
domain_cutout() causes a problem in Citcom. Until fixed, it's
not called.
2004-01-15 08:48 tan2
* visual/batchcombine.py: script to retrieve/combine Citcom data
in OpenDX-friendly format
2004-01-15 08:47 tan2
* visual/batchpaste.sh: run 'rsh ...' in the foreground
2004-01-15 08:17 tan2
* visual/dxgeneral.sh: can have multiple input files now
2004-01-15 07:22 tan2
* visual, visual/batchpaste.sh, visual/combine.py,
visual/dxgeneral.sh, visual/getlog.sh,
visual/pasteCitcomData.sh: add scripts to combine/retrieve
Citcom data
2004-01-15 03:07 tan2
* module/Exchanger/BoundedMesh.cc: small improvement
2004-01-15 02:52 tan2
* module/Exchanger/Boundary.cc: call tightBBox() to init bbox_
2004-01-15 02:49 tan2
* module/Exchanger/BoundedMesh.cc, module/Exchanger/BoundedMesh.h:
add new method tightBBox() which returns a tight bounding box
for current X_
2005-08-23 03:26 unknown_user
* module/Exchanger/TractionBC.cc~, module/Exchanger/TractionBC.h~:
[vcp] delete of edited revision with dead state
2004-01-15 00:52 puru
* module/Exchanger/TractionBC.cc~, module/Exchanger/TractionBC.h~:
TractionBC.cc~ and Traction.h~ have been removed from repository
2004-01-14 10:40 ces74
* module/Exchanger/TractionBC.cc,
module/Exchanger/TractionInterpolator.cc,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.h: bug
fixed. The changes in the name of classes are corrected.
2004-01-14 10:11 ces74
* module/Exchanger/Make.mm, module/Exchanger/TractionBC.cc,
module/Exchanger/TractionBC.cc~, module/Exchanger/TractionBC.h,
module/Exchanger/TractionBC.h~,
module/Exchanger/TractionSource.cc,
module/Exchanger/TractionSource.h, module/Exchanger/bindings.cc,
module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h:
1) New files TractionBC.cc TractionBC.h have been added. 2)
sendTraction is now a method of TractionSource.
2004-01-14 08:34 tan2
* module/Exchanger/initTemperature.cc: add function
basal_tbl_central_hot_blob()
* module/Exchanger/Source.cc, module/Exchanger/Source.h:
definition of destructor is moved from Source.h to Source.cc
2004-01-14 02:53 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
pyre/Solver/Solver.py: change Solver attributes so that
Exchangers don't access Solver.inventory.IC.inventory directly
2004-01-13 11:55 tan2
* module/Exchanger/FEMInterpolator.cc,
module/Exchanger/FEMInterpolator.h, module/Exchanger/misc.cc:
new FEMInterpolator using every element nodes to do
interpolation (was using 4 element nodes)
2004-01-13 11:01 ces74
* pyre/Solver/Solver.py: initialization was improper.
2004-01-13 09:32 tan2
* drivers/Full/Make.mm, drivers/Regional/Make.mm: when linking
binary file, will check dependency on object file
2004-01-13 09:21 ces74
* module/Exchanger/BoundaryCondition.cc,
module/Exchanger/BoundedMesh.cc, module/Exchanger/Interior.cc,
module/Exchanger/InteriorImposing.cc, module/Exchanger/Make.mm,
module/Exchanger/SIUnit.cc, module/Exchanger/Sink.cc,
module/Exchanger/Source.cc, module/Exchanger/exchangers.cc: bugs
fixed. For synchronization between users.
2004-01-10 06:42 ces74
* module/Exchanger/FEMInterpolator.cc: Added a comment line
2004-01-09 14:10 ces74
* module/Exchanger/CartesianCoord.cc: fixed bugs in degenerate
cases.
2004-01-09 09:25 tan2
* module/Exchanger/Convertor.cc: when unconverting,
un-transformate first, then non-dimensionalize next.
2004-01-09 08:38 ces74
* module/Exchanger/CartesianCoord.cc: fixed bug in degenerate case
2004-01-09 07:43 tan2
* pyre/Solver/Solver.py: coupler get init'ed after setProperties()
is called
2005-08-23 03:25 unknown_user
* module/Exchanger/Dimensional.cc, module/Exchanger/Dimensional.h:
[vcp] delete of edited revision with dead state
2004-01-09 07:31 tan2
* module/Exchanger/Dimensional.cc, module/Exchanger/Dimensional.h:
renamed to SIUnit
2004-01-09 05:19 tan2
* module/Exchanger/CartesianCoord.cc: 'Array2D: second index out
of range' bug fixed
2005-08-23 03:25 unknown_user
* module/Exchanger/Interpolator.cc,
module/Exchanger/Interpolator.h: [vcp] delete of edited revision
with dead state
2004-01-09 04:42 tan2
* module/Exchanger/FEMInterpolator.cc,
module/Exchanger/FEMInterpolator.h,
module/Exchanger/Interpolator.cc,
module/Exchanger/Interpolator.h, module/Exchanger/Make.mm,
module/Exchanger/Source.cc, module/Exchanger/Source.h,
module/Exchanger/TractionInterpolator.cc,
module/Exchanger/TractionInterpolator.h,
module/Exchanger/TractionSource.cc,
module/Exchanger/VTInterpolator.cc,
module/Exchanger/VTInterpolator.h: 1. Interpolator is renamed to
VTInterpolator 2. Calculation of shape function is moved to
FEMInterpolator 3. VTInterpolator and TractionInterpolatore
inherit from FEMInterpolator 4. change Source and TractionSource
accordingly
2004-01-09 02:40 tan2
* module/Exchanger/dimensionalization.h: obsolete
2004-01-09 02:38 tan2
* module/Exchanger/SIUnit.cc, module/Exchanger/SIUnit.h:
dimensionalize temperature is done
2004-01-09 02:37 tan2
* module/Regional/setProperties.cc: bug fix
2004-01-09 02:26 tan2
* lib/Common/Instructions.c, module/Regional/setProperties.cc,
pyre/Components/Const.py: 1. Const class has new property
'surftemp' 2. Instruction.c and setProperties.cc readin
E->data.surf_temp and calculate temperature scale from Rayleigh
number and other dimensional constants
2004-01-09 02:04 tan2
* module/Exchanger/Convertor.cc, module/Exchanger/Convertor.h: use
plain pointer instead of auto_ptr
2004-01-09 00:28 puru
* module/Exchanger/CartesianCoord.cc: Bounded box has been
transformed while accounting for degenerate cases
2004-01-08 10:29 tan2
* module/Exchanger/AbstractSource.h,
module/Exchanger/BoundaryCondition.cc,
module/Exchanger/Convertor.cc, module/Exchanger/Interpolator.cc,
module/Exchanger/Sink.cc, module/Exchanger/Sink.h,
module/Exchanger/Source.cc, module/Exchanger/Source.h,
module/Exchanger/TractionInterpolator.cc,
module/Exchanger/TractionSource.cc,
module/Exchanger/TractionSource.h: convert (dimensionalization +
coordinate transformation) of exchanged velocity/temperature is
done
2004-01-08 09:50 tan2
* module/Exchanger/exchangers.cc: bug fixed
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: typo fixed
2004-01-08 07:54 tan2
* module/Exchanger/InteriorImposing.cc,
module/Exchanger/InteriorImposing.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: 1. remove unnecessary functions
in InteriorImposingSink and their bindings 2. convert/unconvert
temperature to standard/internal representation
2004-01-08 06:01 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: changes in
dimensionalization and coordinate transformation scheme
2004-01-08 05:54 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/BoundedMesh.cc, module/Exchanger/BoundedMesh.h,
module/Exchanger/CartesianCoord.cc,
module/Exchanger/CartesianCoord.h,
module/Exchanger/Convertor.cc, module/Exchanger/Convertor.h,
module/Exchanger/Interior.cc, module/Exchanger/Interior.h,
module/Exchanger/Interpolator.cc, module/Exchanger/Make.mm,
module/Exchanger/SIUnit.cc, module/Exchanger/SIUnit.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: 1. Convertor class will convert
coordinate/velocity/traction/time/... from CitcomS' internal
representation to some standard representation (currently in SI
unit and Cartesian coordinate) 2. change other parts of code
accordingly
2004-01-07 16:12 tan2
* module/Exchanger/exchangers.cc: remove calls to Transformation
class
2005-08-23 03:24 unknown_user
* module/Exchanger/Transformational.h: [vcp] delete of edited
revision with dead state
2004-01-07 15:41 tan2
* module/Exchanger/Transformational.cc,
module/Exchanger/Transformational.h: renamed to CartesianCoord
2004-01-07 09:07 tan2
* module/Exchanger/Interpolator.cc,
module/Exchanger/Interpolator.h: remove obsolete function
findMaxGridSpacing()
2004-01-07 06:40 puru
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/BoundedMesh.cc, module/Exchanger/BoundedMesh.h,
module/Exchanger/Interior.cc, module/Exchanger/Interior.h,
module/Exchanger/exchangers.cc: Transformation from Spherical
coordinate system to Euclidean coordinate is done at citcom end
2004-01-07 06:38 puru
* module/Exchanger/CartesianCoord.cc,
module/Exchanger/CartesianCoord.h,
module/Exchanger/Transformational.cc,
module/Exchanger/Transformational.h: Added a new cleass
Transformational for transforming from one coordinate system to
another coordinate system
2003-12-31 05:46 tan2
* module/Exchanger/BoundaryCondition.cc: temporary fix
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/BoundedBox.cc, module/Exchanger/BoundedMesh.cc,
module/Exchanger/BoundedMesh.h, module/Exchanger/Interior.cc,
module/Exchanger/Interior.h, module/Exchanger/bindings.cc,
module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h:
optional dimensionalization
2003-12-31 05:44 tan2
* module/Exchanger/Dimensional.cc, module/Exchanger/Dimensional.h,
module/Exchanger/Make.mm, module/Exchanger/SIUnit.cc,
module/Exchanger/SIUnit.h: add Dimensional class
2003-12-31 05:42 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: 1. add new
property 'dimensional': if it is true, quantities exchanged are
dimensional 2. (optional) dimensional BoundedBox, Boundary,
Interior and timestep
2003-12-30 08:31 ces74
* module/Exchanger/BoundedBox.cc: dimensional_len was being used
without a value assigned. --> temporarily, not used in
regionalGlobalBoundedBox().
2003-12-25 06:46 ces74
* pyre/Solver/Solver.py: a bug fixed: initTemperature is an
attribute of exchanger, not coupler.
2003-12-23 15:02 puru
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: Initial
condition initialization has been done at a higher level
2003-12-23 08:42 puru
* module/Exchanger/Boundary.cc,
module/Exchanger/InteriorImposing.cc,
module/Exchanger/dimensionalization.h: fixed dimensionalization
2003-12-23 01:47 puru
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: all_variables
has been moved from Exchanger to Finegrid and Coarsegrid
Exchangers (for CitcomS-Snac Coupling)
2003-12-20 02:21 tan2
* module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: add bindings to functions
initTemperatureSink(), initTemperatureSource() and modifyT() for
exchange initial temperature field between CitcomS-CitcomS
2003-12-19 16:05 tan2
* module/Exchanger/initTemperature.h: add functions
initTemperatureSink(), initTemperatureSource() and modifyT() for
exchange initial temperature field between CitcomS-CitcomS
2003-12-19 06:30 puru
* pyre/Components/Exchanger/__init__.py: Changed __init__.py to
export Exchange class
2003-12-17 12:27 puru
* module/Exchanger/Boundary.cc,
module/Exchanger/BoundaryCondition.cc,
module/Exchanger/BoundedBox.cc, module/Exchanger/Interior.cc,
module/Exchanger/InteriorImposing.cc,
module/Exchanger/Interpolator.cc,
module/Exchanger/TractionInterpolator.cc,
module/Exchanger/dimensionalization.h: 1) Added dimensionalize.h
which contains variables for dimensionalizing CitcomS variables
2) All variables sent out by Citcom exchanger are
dimensionalized 3) All variables received in by Citcom exchanger
are non-dimensionalized
2003-12-17 09:35 puru
* module/Exchanger/Interpolator.cc: fixed bug
2003-12-17 03:09 tan2
* module/Exchanger/Make.mm: add compilation for
TractionInterpolator.cc and TractionSource.cc
2003-12-17 03:08 tan2
* module/Exchanger/Source.cc, module/Exchanger/Source.h: remove
functions about traction interpolation (moved to TractionSource)
2003-12-17 02:50 tan2
* module/Exchanger/TractionSource.cc,
module/Exchanger/TractionSource.h: source for CitcomS-Snac
coupling
2003-12-16 11:01 puru
* module/Exchanger/Boundary.cc, module/Exchanger/BoundedBox.cc,
module/Exchanger/Interior.cc, module/Exchanger/Interpolator.cc:
Dimensionalized exchanger part for the ease of interaction with
Snac
2003-12-16 10:14 tan2
* module/Exchanger/FEMInterpolator.h,
module/Exchanger/TractionInterpolator.cc,
module/Exchanger/TractionInterpolator.h: 1. remove const-ness in
Interpolate*() functions 2. remove passing E in
TractionInterpolator 3. remove static qualifier of some local
var. in TractionInterpolator
2003-12-04 08:28 puru
* module/Exchanger/InteriorImposing.cc,
module/Exchanger/TractionInterpolator.cc: Conevrsion from
dimensional to non-dimensional and vice-versa 1) Forces have
been dimensionalized in TractioInterpolator before sent to Snac
2) Velocities have been non-dimensionalized in InteriorImposing
after receiving from Snac
2003-11-30 09:22 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: add
restartTemperature() for read/send/receive/modify restarted
temperature
2003-11-30 09:21 tan2
* module/Exchanger/initTemperature.cc: add comments and call
temperatures_conform_bcs()
2003-11-30 08:12 tan2
* lib/Common/Process_buoyancy.c: fix a bug of flushing (maybe)
non-existing file handle
2003-11-29 06:34 ces74
* module/Exchanger/TractionInterpolator.cc,
module/Exchanger/TractionInterpolator.h: a new class added, but
not being used yet.
2003-11-29 06:32 ces74
* module/Exchanger/Interpolator.cc: interpolateF removed.
* module/Exchanger/Interpolator.h: interpolateF removed
2003-11-29 06:25 ces74
* module/Exchanger/exchangers.h: new definitions added for
domain_cutout and sendTraction
2003-11-29 06:23 ces74
* module/Exchanger/exchangers.cc: new bindings added: PyObject *
pyExchanger_sendTraction(PyObject *, PyObject *args) PyObject *
pyExchanger_domain_cutout(PyObject *, PyObject *args)
2003-11-29 06:21 ces74
* module/Exchanger/bindings.cc: two entries added: sendTraction
and domain_cutout
2003-11-29 06:20 ces74
* module/Exchanger/BoundaryCondition.h: new functions added: void
sendTraction() void domain_cutout()
2003-11-29 06:20 tan2
* module/Regional/bindings.cc,
module/Regional/initial_conditions.cc,
module/Regional/initial_conditions.h: add bindings to
'restartTemperature()' and 'constructTemperature()', which are
used for temperature initial condition
2003-11-29 06:19 ces74
* module/Exchanger/Source.h: new functions defined: void
interpolateF(Array2D<double,DIM>& F, All_variables* E) const;
void domain_cutout(const All_variables* E) const;
2003-11-29 06:18 ces74
* module/Exchanger/Source.cc: new functions added: void
Source::interpolateF() void Source::domain_cutout()
2003-11-29 06:18 tan2
* module/Regional/setProperties.cc: *** empty log message ***
2003-11-29 06:17 tan2
* pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/IC.py, pyre/Solver/Solver.py: move properties
'inputdiffusivity' from Solver to Advecton_diffusion; 'restart',
'post_p', 'solution_cycles_init', and 'zero_elapsed_time' from
Solver to IC
2003-11-29 06:16 ces74
* module/Exchanger/BoundaryCondition.cc: The body of the following
functions are commented out: void
BoundaryConditionSource::sendTraction() void
BoundaryConditionSource::domain_cutout()
2003-11-29 06:14 tan2
* pyre/CoupledApp.py, pyre/SimpleApp.py: add factory functions
2003-11-29 05:42 ces74
* lib/Common/Size_does_matter.c: two new functions added: 1. void
construct_side_c3x3matrix_el() 2. void
get_global_side_1d_shape_fn()
2003-11-27 07:27 tan2
* drivers/Full/Make.mm, drivers/Regional/Make.mm: modify Make.mm
so that it always make a new binary file
2003-11-27 07:25 tan2
* lib/Regional/Parallel_related.c: fix a bug of memory leak
2003-11-27 06:31 tan2
* lib/Regional/Geometry_cartesian.c: fix a bug when reading input
parameters
2003-11-27 05:26 tan2
* lib/Common/Initial_temperature.c, lib/Full/Version_dependent.c,
lib/Regional/Version_dependent.c: 1. combine and move
'restart_tic_from_file()' from Version_dependent.c to
Initial_temperature.c 2. fix bug in calculating dimensional
information: E->data.layer_km is in kilometers, not in meters.
2003-11-27 05:24 tan2
* lib/Full/Make.mm, lib/Regional/Make.mm: remove options related
to library linking
2003-11-26 02:41 puru
* module/Exchanger/InteriorImposing.cc: fixed a bug
2003-11-26 01:58 puru
* module/Exchanger/InteriorImposing.cc,
module/Exchanger/InteriorImposing.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: Added facility (recvV) for
CitcomS to receive velocity boundary condition in Snac-Citcom
coupling
2003-11-25 10:59 tan2
* module/Exchanger/AbstractSource.h,
module/Exchanger/FEMInterpolator.h,
module/Exchanger/InformationSourceSink.h: base classes for
exchanger
2003-11-25 05:38 ces74
* lib/Common/Instructions.c: The line for assigning memory to
E->traction[] has been removed.
2003-11-25 05:37 ces74
* lib/Common/global_defs.h: traction[] array removed.
* lib/Common/Topo_gravity.c: populate E->gstress in get_STD_topo.
2003-11-25 05:26 ces74
* lib/Common/Instructions.c: memory allocation to "E->gstress" and
"E->traction[j]".
2003-11-25 05:25 ces74
* lib/Common/global_defs.h: new data members, "gstress" and
"traction", added to the "All_variables" structure.
2003-11-25 05:22 ces74
* module/Exchanger/Interpolator.cc: a typo fixed
2003-11-25 05:03 ces74
* module/Exchanger/Interpolator.h: The prototype of "interpolateF"
added to the class "Interpolator" as a public member function.
* module/Exchanger/Source.h: The prototype of "interpolateF" added
to the class "Source" as a public member function.
2003-11-24 03:08 ces74
* module/Exchanger/exchangers.h: the definition of
"pyExchanger_sendTraction" added.
2003-11-24 03:06 ces74
* module/Exchanger/exchangers.cc: Python binding for sendTraction
implemented.
2003-11-24 03:04 ces74
* module/Exchanger/bindings.cc: "sendTraction" added to
Exchanger's method table
2003-11-24 02:25 ces74
* module/Exchanger/BoundaryCondition.cc: a typo fixed
* module/Exchanger/BoundaryCondition.cc:
BoundaryConditionSource::sendTraction() has been implemented.
This is for sending CitcomS' traction to other app as force BC.
2003-11-24 02:21 ces74
* module/Exchanger/BoundaryCondition.h: 1. A datamember, "fbc",
added to the class, "BoundaryConditionSource". 2. A public
memberfunction, "sendTraction()" added to
"BoundaryConditionSource". These are for sending CitcomS'
traction to other app. as force BC.
2003-11-24 02:11 ces74
* module/Exchanger/Source.cc: a typo fixed
2003-11-24 02:10 ces74
* module/Exchanger/Source.cc: Source::interpolateF added. This is
for sending CitcomS' traction to other app's as force BC.
2003-11-24 02:05 ces74
* module/Exchanger/Interpolator.cc: a typo fixed
2003-11-24 02:02 ces74
* module/Exchanger/Interpolator.cc: interpolateF added. This is
for sending CitcomS' traction to other app's force BC.
2003-11-23 16:33 steve
* module/Regional/Make.mm: changed from $(TOOLS_DIR)/lib to
$(TOOLS_LIBDIR) as the former is not always true (if you let
pyre choose the export dir it will be in .../lib/Linux...)
2003-11-23 16:31 steve
* module/Full/Make.mm: changed from $(TOOLS_DIR)/lib to
$(TOOLS_LIBDIR) as the former is not always true (if you let
pyre choose the export dir it will be in .../lib/Linux...)
2003-11-22 07:15 tan2
* module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/Boundary.cc,
module/Exchanger/BoundaryCondition.cc,
module/Exchanger/BoundedMesh.h, module/Exchanger/Interior.cc,
module/Exchanger/InteriorImposing.cc: 1. attribute name changed:
BoundedMesh.meshID ==> BounedMesh.nodeID 2. in
BoundaryConditionSink::imposeTBC, call 'temperatures_conform_bcs'
2003-11-20 03:06 tan2
* lib/Full/Read_input_from_files.c: restart file has cap number
0~11 (was 1~12)
2003-11-12 03:45 ces74
* module/Exchanger/BoundaryCondition.cc: setTBCFlag and imposeTBC
completed.
2003-11-12 03:29 tan2
* module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h,
module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/Interior.cc, module/Exchanger/Interior.h,
module/Exchanger/InteriorImposing.cc,
module/Exchanger/InteriorImposing.h,
module/Exchanger/Interpolator.cc, module/Exchanger/Sink.cc,
module/Exchanger/Sink.h, module/Exchanger/Source.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h, module/Exchanger/misc.cc,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: 2-way
communication
2003-11-11 05:59 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: change in
BoundaryConditionSink c'tor
2003-11-11 05:55 tan2
* module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/AreaWeightedNormal.h,
module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h,
module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/BoundaryCondition.cc,
module/Exchanger/BoundaryCondition.h,
module/Exchanger/BoundedMesh.cc, module/Exchanger/BoundedMesh.h,
module/Exchanger/Interior.h, module/Exchanger/Make.mm,
module/Exchanger/Sink.h, module/Exchanger/Source.h,
module/Exchanger/exchangers.cc,
module/Exchanger/utilTemplate.cc,
module/Exchanger/utilTemplate.h, module/Exchanger/utility.cc,
module/Exchanger/utility.h: 1. multi-processor
AreaWeightedNormal 2. small improvements
2003-11-08 05:43 puru
* module/Exchanger/InteriorImposing.cc,
module/Exchanger/InteriorImposing.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: added bindings for two way
communication
2003-11-08 04:41 puru
* module/Exchanger/Interior.cc: Made it easier to read and
initialized bbox_
2003-11-08 04:39 puru
* module/Exchanger/InteriorImposing.cc,
module/Exchanger/InteriorImposing.h: Added InteriorImposing for
two-way communication
2003-11-07 13:47 puru
* module/Exchanger/Interior.cc: fixed the bug
2003-11-07 13:14 puru
* module/Exchanger/Interior.cc: Set interior nodes for two way
communication
2003-11-07 09:20 tan2
* module/Exchanger/BoundaryCondition.cc,
module/Exchanger/BoundaryCondition.h: remove unnecessary base
class BoundaryCondition
2005-08-23 03:21 unknown_user
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h,
module/Exchanger/Mapping.cc, module/Exchanger/Mapping.h,
module/Exchanger/auto_array_ptr.h: [vcp] delete of edited
revision with dead state
2003-11-07 09:08 tan2
* module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/AreaWeightedNormal.h,
module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h,
module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/BoundaryCondition.cc,
module/Exchanger/BoundaryCondition.h,
module/Exchanger/BoundedBox.cc, module/Exchanger/BoundedBox.h,
module/Exchanger/BoundedMesh.cc, module/Exchanger/BoundedMesh.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h, module/Exchanger/DIM.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/Exchangermodule.cc,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h,
module/Exchanger/Interior.cc, module/Exchanger/Interior.h,
module/Exchanger/Interpolator.cc,
module/Exchanger/Interpolator.h, module/Exchanger/Make.mm,
module/Exchanger/Mapping.cc, module/Exchanger/Mapping.h,
module/Exchanger/Sink.cc, module/Exchanger/Sink.h,
module/Exchanger/Source.cc, module/Exchanger/Source.h,
module/Exchanger/auto_array_ptr.h, module/Exchanger/bindings.cc,
module/Exchanger/bindings.h, module/Exchanger/exceptions.cc,
module/Exchanger/exceptions.h, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h,
module/Exchanger/initTemperature.cc,
module/Exchanger/initTemperature.h, module/Exchanger/misc.cc,
module/Exchanger/misc.h, module/Exchanger/utilTemplate.cc,
module/Exchanger/utilTemplate.h,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
pyre/CoupledApp.py, pyre/Coupler.py, pyre/Layout.py,
pyre/Solver/Solver.py: point-to-point communication
2003-10-31 07:36 tan2
* module/Exchanger/ExchangerClass.cc, module/Exchanger/Mapping.cc:
replace c functions/macros (fabs, min, max) with c++ functions
2003-10-31 07:28 tan2
* lib/Common/global_defs.h: add "#if defined(__cplusplus)" clause
to skip macro (max, min, SWAP) definition when included in C++
2003-10-31 06:45 tan2
* module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h: fixed a
bug that send/receive used different tag.
2003-10-31 06:25 tan2
* tests/Make.mm, tests/array2d.cc: add tests for Array2D class
2003-10-31 06:21 tan2
* module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h: 1. add
non-blocking version of send/receive 2. move inlined function
definition from .h to .cc file
2003-10-30 02:40 tan2
* module/Full/Make.mm, module/Regional/Make.mm,
module/Regional/bindings.cc,
module/Regional/initial_conditions.cc,
module/Regional/initial_conditions.h, module/Regional/mesher.cc,
module/Regional/stokes_solver.cc,
module/Regional/stokes_solver.h, pyre/Components/IC.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Solver/Solver.py: 1. let IC initialize temperature,
pressure, velocity, and viscosity fields 2. let Incompressible
call general_stokes_solver_setup() 3. coupler.initTemperature
replaces ic.initTemperature
2003-10-30 01:18 tan2
* module/Exchanger/Array2D.h: index range check when debugging
2003-10-29 09:13 tan2
* pyre/CoupledApp.py, pyre/Coupler.py, pyre/Solver/Solver.py: bug
fix and small improvement
2003-10-29 07:52 tan2
* module/Regional/bindings.cc, module/Regional/setProperties.cc,
module/Regional/setProperties.h: add Solver_set_properties() and
its binding
2005-08-23 03:20 unknown_user
* pyre/Components/Stokes_solver/Stokes_solver.py: [vcp] delete of
edited revision with dead state
2003-10-29 07:51 tan2
* pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Advection_diffusion/__init__.py,
pyre/Components/BC.py, pyre/Components/Const.py,
pyre/Components/Exchanger/__init__.py, pyre/Components/IC.py,
pyre/Components/Param.py, pyre/Components/Phase.py,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Sphere/Sphere.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Stokes_solver.py,
pyre/Components/Stokes_solver/__init__.py,
pyre/Components/Visc.py, pyre/CoupledApp.py, pyre/SimpleApp.py,
pyre/Solver/FullSolver.py, pyre/Solver/RegionalSolver.py,
pyre/Solver/Solver.py: 1. move properties around 2. provide
default argurments to all constructors or factories
2003-10-29 03:57 tan2
* module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h: 1. add
sendSize(), receiveSize(), broadcastSize() and empty() methods
2. send(), receive(), and broadcast() will send/recieve size
information and adjust its memory accordingly
2003-10-29 01:24 tan2
* pyre/Controller.py: *** empty log message ***
2003-10-28 10:34 puru
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h,
module/Exchanger/Mapping.cc, module/Exchanger/Mapping.h: Two way
communication between Coarse and Fine Grid has been incorporated
2003-10-28 09:56 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Solver/Solver.py: fixed bugs in time marching and output
2003-10-28 09:55 tan2
* pyre/Components/Sphere/__init__.py: add default component name
2003-10-28 09:52 tan2
* module/Make.mm: change the order of complilation: Exchanger/ is
done last
2003-10-28 09:51 tan2
* module/Exchanger/ExchangerClass.cc: change to Array2D.swap()
* module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h: 1.
implementation changed: using vector as internal representation
2. swap() becomes a member function
2003-10-25 07:45 ces74
* lib/Full/Version_dependent.c: a bug fixed in
global_derived_values(): nox = E->mesh.mgunitx * (int)
pow(2.0,(double)i), etc. ===> nox = E->mesh.mgunitx * (int)
pow(2.0,(double)i)*E->parallel.nprocx, etc.
2003-10-24 12:23 tan2
* tests/coupledcitcoms.py, tests/exchange.py, tests/test1.sh,
tests/test2.sh: update tests according to changes in module/ and
pyre/
2003-10-24 12:04 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
pyre/Components/Exchanger/__init__.py: 1. remove unsed
attributes 'localLeader' 2. in __init__.py, factory methods now
doesn't need any argument
2005-08-23 03:19 unknown_user
* pyre/Controller/Make.mm, pyre/Controller/__init__.py,
pyre/Coupler/Coupler.py, pyre/Coupler/Make.mm,
pyre/Coupler/__init__.py, pyre/Layout/Layout.py,
pyre/Layout/Make.mm, pyre/Layout/__init__.py: [vcp] delete of
edited revision with dead state
2003-10-24 11:55 tan2
* pyre/Controller.py, pyre/Controller/Controller.py,
pyre/Controller/Make.mm, pyre/Controller/__init__.py,
pyre/CoupledApp.py, pyre/Coupler.py, pyre/Coupler/Coupler.py,
pyre/Coupler/Make.mm, pyre/Coupler/__init__.py, pyre/Layout.py,
pyre/Layout/Layout.py, pyre/Layout/Make.mm,
pyre/Layout/__init__.py, pyre/Make.mm, pyre/Solver/Solver.py: 1.
move Controller.py, Coupler.py, and Layout.py to pyre/ directory
2. change Make.mm accordingly 3. remove unused attributes
'self.localLeader' in Layout, CoupledApp, and Solver
2003-10-24 11:51 tan2
* module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h,
module/Exchanger/Boundary.cc,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h,
module/Exchanger/Mapping.cc, module/Exchanger/Mapping.h,
module/Exchanger/exchangers.cc: 1. add shrink() in Array2D 2.
add shrinksize() in Boundary and Mapping 3. write (most) output
via journal 4. remove unused attribute 'localLeader' in Exchanger
2003-10-24 02:06 puru
* module/Exchanger/Mapping.cc, module/Exchanger/Mapping.h: fixed
bugs
2003-10-24 01:26 puru
* module/Exchanger/Mapping.cc, module/Exchanger/Mapping.h: added
FindInteriorNodes
2003-10-23 03:33 ces74
* module/Exchanger/AreaWeightedNormal.cc: a bug fixed: in
AreaWeightedNormal::imposeConstraint() if(outflow >
toleranceOutflow_) ==> if (fabs(outflow) > toleranceOutflow_)
2003-10-22 08:15 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/Mapping.cc, module/Exchanger/Mapping.h: add
resize() method
2003-10-22 08:13 tan2
* module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h: 1.
resize() will copy the old data to new memory location 2. make
reset() private (because its syntax in error-prone)
2003-10-22 00:32 tan2
* tests/test2.sh: with correction on outflow
2003-10-22 00:31 tan2
* tests/test2.sh: coupled citcoms test (4-proc coarse-grid solver,
1-proc fine-grid solver, no correction on outflow)
2003-10-22 00:26 tan2
* tests/test1.sh: functional test of exchanger
2003-10-21 00:13 tan2
* module/Exchanger/AreaWeightedNormal.cc,
module/Exchanger/AreaWeightedNormal.h,
module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h, module/Exchanger/Make.mm:
more small improvements
2003-10-21 00:12 tan2
* module/Exchanger/Array2D.cc: bug in memory allocation fixed
2003-10-20 02:54 tan2
* module/Exchanger/Array2D.h, module/Exchanger/Mapping.h: fixed a
bug in declaration
2003-10-19 08:01 tan2
* module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h,
module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h,
module/Exchanger/Mapping.cc, module/Exchanger/Mapping.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: many many small improvements
2003-10-18 03:18 ces74
* lib/Common/General_matrix_functions.c: A bug fixed in
solve_del2_u(): now multigrid method can be used.
2003-10-17 03:06 tan2
* module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/Mapping.cc, module/Exchanger/Mapping.h: 1.
generalize template Array2D<class T, int N>, T can be double,
float, int, or char. 2. using Array2D in class Mapping 3. throw
exception when selftest failed
2003-10-16 01:51 tan2
* module/Exchanger/FineGridExchanger.cc: bug in reduceOutflow()
fixed
2003-10-11 07:40 tan2
* pyre/Components/Exchanger/FineGridExchanger.py: add call to
module.imposeConstraint()
2003-10-11 07:38 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h, module/Exchanger/Make.mm,
module/Exchanger/Mapping.cc, module/Exchanger/Mapping.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: 1. add class 'Mapping' and its
derived classes 'CoarseGridMapping' and 'FineGridMapping' 2.
move 'bid2gid', 'bid2proc', 'bid2elem', and 'shape' from
Boundary to Mapping 3. change Exchanger classes accordingly
2003-10-11 07:35 tan2
* module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h: add
prefix to the output
2003-10-11 01:14 tan2
* module/Exchanger/Array2D.cc, module/Exchanger/Array2D.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h: 1. replace 'strcut Data' by
'Array2D<int N>', replace 'incoming' and 'outgoing' by
'incomingV', 'outgoingV', 'incomingT' and 'outgoingT' 2.
decompose 'imposeConstraint()' into 'computeWeightedNormal()',
'computeOutflow()', and 'reduceOutflow()'
2003-10-06 11:31 tan2
* lib/Common/global_defs.h: header guard #define directive is added
2003-10-06 11:30 tan2
* lib/Common/Viscosity_structures.c: bug preventing viscosity
initialization is fixed
2003-10-06 08:09 puru
* module/Exchanger/Boundary.cc: Bug associated with round off
error of degenerate case in fine grid node to Coarse grid
element map has been fixed.
2003-10-06 07:53 puru
* module/Exchanger/ExchangerClass.cc: bug associated switching of
indices of theta and of theta fi has been fixed
2003-10-06 01:55 tan2
* module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h: 1. smoother temperature field
in initTemperature() 2. remove obsolete functions
2003-10-05 06:37 puru
* module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h: added method imposeConstraint
to correct velocities which are consistent with
incompressibility of the fluid.
2003-10-04 21:24 puru
* module/Exchanger/ExchangerClass.cc: Boundary conditions for fine
mesh have been modified to satisfy incompressiblility constraint
in receiveVelocities
2003-10-04 04:50 puru
* module/Exchanger/ExchangerClass.cc: net outflow corresponding to
velocity boundary conditions has been added.
2003-10-04 02:20 tan2
* module/Exchanger/Boundary.cc: bug fix
2003-10-04 01:36 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h: 1.
decompose init() to two functions initBound() and
findBoundaryNodes() 2. remove init(), all of its functionality
is done in mapFindGrid() 3. in mapCoarseGrid(), extend the
domain when searching for node mapping 4. use auto_array_ptr for
all member arrays to improve exception safety
2003-10-04 01:25 tan2
* module/Exchanger/auto_array_ptr.h: first import, modified from
Jack W. Reeves' code on March 1996 issue of the C++ Report.
2003-10-04 01:18 tan2
* pyre/Solver/Solver.py: call coupler.launch() right after
mesher.run() to set BC flag and reconstruct ID array
2003-10-04 01:17 tan2
* pyre/Components/Exchanger/FineGridExchanger.py: 1. add call to
self.module.setBCFlag() 2. call mapBoundary() before
sendBoundary() to reflect change in module/Exchanger/Boundary.cc
2003-10-04 01:12 tan2
* module/Exchanger/FineGridExchanger.cc: 1. calculate
boundary.size in a simplified way 2. remove call to
boundary.init() (the job of init() is done in mapFindGrid() now)
2003-10-04 01:10 tan2
* module/Exchanger/misc.cc: init E->mesh.nno in commonE()
2003-10-02 08:14 tan2
* module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h, module/Exchanger/Make.mm,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: 1. add Exchanger::setBCFlag() to
set BC Flag and reconstruct E->ID 2. add binding to
Exchanger::setBCFlag()
2003-10-02 05:21 tan2
* module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h, module/Exchanger/bindings.cc,
module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h:
add Exchanger::initTemperature() and its binding
2003-10-02 05:16 tan2
* pyre/Solver/Solver.py: 1. pass Solver.inventory.datafile to
Param.inventory.datafile to get around a bug in pyre 2. add
solveVelocities() and solverTemperature() 3. comment out
applyBoundaryConditions(). BC is applied by FGE.preVSolverRun()
or CGE.postVSolverRun() 4. fix a logical bug, exchanging
velocities is done at the correct timestep
2003-10-02 05:07 tan2
* pyre/Solver/FullSolver.py, pyre/Solver/RegionalSolver.py: add
property 'datafile' to get around a bug in pyre
2003-10-02 05:06 tan2
* pyre/Coupler.py, pyre/Coupler/Coupler.py: 1. remove
solveVelocities() 2. add preVSolverRun() and postVSolverRun()
2003-10-02 05:04 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: 1. remove
solverVelocities() 2. add preVSolverRun() and postVSolverRun()
3. add attribute 'toApplyBC' in FGE, which flags applying BC or
not 4. print time marching information
2003-09-30 09:02 puru
* module/Exchanger/ExchangerClass.cc: fixed degeneracy associated
with cge=0
2003-09-30 08:50 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: add
solveVelocities() and storeTimestep()
2003-09-30 08:49 tan2
* pyre/Controller.py, pyre/Controller/Controller.py: disable call
to applyBoundaryConditions()
2003-09-30 08:48 tan2
* pyre/Coupler.py, pyre/Coupler/Coupler.py: add solveVelocities()
2003-09-30 08:47 tan2
* pyre/Solver/Solver.py: when coupled, call solveVelocities()
instead of vsolver.run()
2003-09-30 08:45 puru
* module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h: Interpolated Boundary
conditions for fine mesh from coarse mesh has been added
2003-09-30 08:33 tan2
* module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h, module/Exchanger/bindings.cc,
module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h:
1. add attributes 'fge_t' and 'cge_t' in Exchanger class 2. init
'fge_t' and 'cge_t' in constructor 3. add functions
storeTimestep() in Exchanger class 4. add binding to
storeTimestep()
2003-09-30 07:48 puru
* module/Exchanger/Boundary.cc: Modified to account for multiple
processes
2003-09-30 07:39 tan2
* module/Full/Make.mm, module/Regional/Make.mm: bug fixed
2003-09-30 05:31 puru
* module/Exchanger/Boundary.cc, module/Exchanger/misc.cc: Modified
to account for 2*PI crossover in spherical coordinates system
2003-09-30 03:25 tan2
* module/Full/Make.mm, module/Regional/Make.mm: update library and
include path
2003-09-30 03:23 tan2
* pyre/Layout.py, pyre/Layout/Layout.py: cosmetics
2003-09-30 03:22 tan2
* pyre/Coupler.py, pyre/Coupler/Coupler.py: bug fix
* module/Regional/setProperties.cc: bug in output fixed
2003-09-30 03:21 tan2
* drivers/Citcom.c, lib/Common/Instructions.c,
module/Regional/mesher.cc, pyre/Controller.py,
pyre/Controller/Controller.py, pyre/Solver/Solver.py: 1. open
'fptime' is moved to drivers/Citcom.c 2. rename
open_log_and_time() to open_log() 3. add time ouput in pyre
version
2003-09-30 01:34 puru
* module/Exchanger/Boundary.cc: Implemented more efficient search
of coarse element for fine mesh nodes
2003-09-30 01:06 tan2
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h: 1. add helper functions
printDataT() and printDataV() 2. replace old debugging output by
printDataV()
2003-09-30 01:03 tan2
* module/Exchanger/misc.cc: 1. allocate and initialize
E->sphere.cap[].V 2. change debugging output accordingly
2003-09-29 09:52 puru
* module/Exchanger/CoarseGridExchanger.cc: *** empty log message
***
2003-09-29 09:20 puru
* module/Exchanger/misc.cc: fixed a bug
2003-09-29 09:09 puru
* module/Exchanger/misc.cc: converted from cartesian to spherical
coordinates
2003-09-29 09:04 puru
* module/Exchanger/Boundary.cc: Converted from cartesian
coordinates to spherical coordinates
2003-09-29 04:44 tan2
* pyre/CoupledApp.py: change default coarse solver to full version
* pyre/Controller.py, pyre/Controller/Controller.py: pass
'totalTime' and 'steps' to endTimestep()
2003-09-29 04:43 tan2
* pyre/Coupler.py, pyre/Coupler/Coupler.py: 1. remove call to
exchanger.mapBoundary() 2. comment out call to
exchanger.initTemperature()
2003-09-29 03:45 tan2
* module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h, module/Exchanger/bindings.cc,
module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h:
1. wait() and nowait() is replaced by exchangeSignal() 2. add
helper functions exchangeInt(), exchangeDouble() and
exchangeFloat()
2003-09-29 03:41 tan2
* module/Exchanger/misc.cc: cosmetics
2003-09-29 03:40 tan2
* pyre/Controller.py, pyre/Controller/Controller.py,
pyre/Coupler.py, pyre/Coupler/Coupler.py, pyre/Solver/Solver.py:
1. add attribute 'self.done' in Controller indicating end of
simulation 2. change argument list and return list of
endTimestep() 3. Coupler can terminate the time marching by
returning False at endTimestep() 4. synchronization between
solvers is done in endTimestep
2003-09-29 03:36 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
tests/exchange.py: 1. synchronization between solvers is done in
endTimestep() (was in NewStep()) 2. pass the test on
synchronization 3. delete functions createDataArrays() and
deleteDataArrays()
2003-09-28 22:47 tan2
* module/Exchanger/ExchangerClass.cc: check proc. rank in
imposeBC()
2003-09-28 22:36 tan2
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/FineGridExchanger.cc: call createDataArrays()
inside mapBoundary()
2003-09-28 13:03 tan2
* module/Exchanger/misc.cc: allocate and init E->node and E->cap.VB
2003-09-28 13:01 tan2
* pyre/Components/Exchanger/FineGridExchanger.py: finish test
2003-09-28 07:35 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
tests/exchange.py: 1. rename 'leaderRank' to 'leader' 2. remove
unused functions
2003-09-28 07:34 tan2
* module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: remove unused bindings
2003-09-28 07:30 tan2
* pyre/Layout.py, pyre/Layout/Layout.py, pyre/Solver/Solver.py:
rename attribute 'leaderRank' to 'leader'
2003-09-28 07:11 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h,
module/Exchanger/exchangers.cc: 1. remove attribute 'lrank' in
Exchanger class 2. 'rank' is processor rank in local
communicator 3. modify Exchanger::createDataArray() and
Exchanger::deleteDataArray() 4. gather() and distribute() become
pure virtual functions 5. finish CGE::gather() 6. rename
interpolate() to interpretate() 7. modify CGE::interpretate()
2003-09-28 04:04 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h: 1.
bid2proc contains current proc. rank (was current capid) 2. add
sendBid2proc(), which send bid2proc array of each processor to
localLeader 3. add printBid2proc() and printBid2elem() for
debugging
2003-09-28 03:52 tan2
* module/Exchanger/exchangers.cc: change argument list of
create*Exchanger()
2003-09-28 03:30 tan2
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h: 1. add attribute
'leaderRank' 2. change argument list of constructors 3. rewrite
sendVelocities() and receiveVelocities()
2003-09-28 03:24 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
pyre/CoupledApp.py, pyre/Solver/Solver.py: 1. add attribute
'leaderRank' 2. pass 'leaderRank' to createExchanger()
2003-09-28 03:17 tan2
* pyre/Layout.py, pyre/Layout/Layout.py: add attribute 'leaderRank'
2003-09-28 03:16 tan2
* module/Exchanger/misc.cc: init E->parallel.nproc
2003-09-28 00:12 tan2
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h,
module/Exchanger/exchangers.cc: 1. add new attributes 'lrank' 2.
change arugment list of consturctors of all exchangers 3.
cosmetics
2003-09-27 07:30 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py: remove
getBid2crseelem()
2003-09-27 07:29 tan2
* module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h: add dummy definition of
gather() and distribute()
2003-09-27 07:28 tan2
* module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: 1. remove binding to
CoarseGridExchanger::getBid2crseelem()
2003-09-27 07:27 tan2
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h: 1. sendBoundary() and
receiveBoundary() delegate most of their jobs to
Boundary::send(), Boundary::receive() and Boundary::broadcast()
2. change return type of sendBoundary() from int to void 3.
change argument list of mapFineGrid() and mapCoarseGrid() 4.
remove CoarseGridExchanger::getBid2crseelem()
2003-09-27 07:09 tan2
* module/Exchanger/misc.cc: 1. init E->X according domain bound
information in commonE() 2. add initialization of
E->sphere.capid[] 3. change domain bound in FinereturnE()
2003-09-27 07:05 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h: 1.
delete attribute 'connectivity' 2. change argument list of
mapFineGrid() and mapCoarseGrid() 3. add send(), receive() and
broadcast() 4. add printBound() 5. move Tetrahedronvolume() and
det3_sub() to private section 6. fix 'delete []' bug in
mapFineGrid() 7. remove redundant initialization of X in
mapFineGrid() 8. cosmetics
2003-09-27 05:04 puru
* module/Exchanger/Boundary.cc: bug fixed
2003-09-27 04:54 ces74
* pyre/Solver/Solver.py: a typo fixed.
2003-09-27 04:11 tan2
* module/Exchanger/misc.cc: reduce repeated codes and do some
cosmetics
2003-09-27 02:04 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
tests/exchange.py: replace self.fine_E and self.coarse_E by
self.all_variables
2003-09-27 02:03 tan2
* pyre/Layout.py, pyre/Layout/Layout.py: change back: 'coarse' is
full CitcomS
2003-09-27 01:24 puru
* module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc: bid2crseelem has been
replaced with more obvious bid2elem and bid2proc
2003-09-27 01:23 puru
* module/Exchanger/Boundary.cc: bid2crseelem with more obvious
bid2elem and bid2proc have been introduced
2003-09-27 00:33 tan2
* module/Exchanger/Boundary.cc: uncomment self test
2003-09-27 00:01 ces74
* module/Exchanger/ExchangerClass.cc: Exchanger::imposeBC fixed.
2003-09-26 08:05 ces74
* module/Exchanger/ExchangerClass.cc: ImposeBC now changes flags
of boundary nodes.
2003-09-26 05:47 ces74
* module/Exchanger/CoarseGridExchanger.cc: test output modified in
CoarseGridExchanger::interpolate
2003-09-26 05:45 ces74
* module/Exchanger/Boundary.cc: an error fixed in
Boundary::getBid2crseelem
2003-09-26 05:37 ces74
* module/Exchanger/Boundary.cc: Test part of
Boundary::getBid2crseelem() is temporarily commented out.
2003-09-26 05:25 ces74
* module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/FineGridExchanger.h: gather and distribute are
members of Exchanger Class.
2003-09-26 05:14 ces74
* module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h:
CoarseGridExchanger.interpolateTemperature added
* module/Exchanger/bindings.cc:
CoarseGridExchanger.interpolateTemperature addedcc
2003-09-26 02:17 ces74
* module/Exchanger/CoarseGridExchanger.cc: errors fixed in
CoarseGridExchanger::interpolate.
2003-09-26 02:16 ces74
* module/Exchanger/FineGridExchanger.cc: boundary->bid2gid is
transferred from Fine to Coarse Grid.
2003-09-25 10:37 ces74
* module/Exchanger/Boundary.cc: theta_max, theta_min, fi_max,
fi_min, ro ,ri were being redeclared as local variables -->
fixed so that they are used only as members of boundary class.
2003-09-25 09:51 ces74
* module/Exchanger/CoarseGridExchanger.cc: typo fixed.
2003-09-25 03:14 puru
* module/Exchanger/Boundary.cc,
module/Exchanger/CoarseGridExchanger.cc: Interpolation with
arbitrary element shapes has been added
2003-09-25 02:42 puru
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc: interpolation test added
2003-09-24 11:53 puru
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h:
interpolation from corase to fine has been added
2003-09-23 01:14 ces74
* lib/Common/global_defs.h, lib/Regional/Boundary_conditions.c,
module/Exchanger/Boundary.cc,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h, module/Exchanger/misc.cc,
pyre/Components/Exchanger/FineGridExchanger.py,
tests/exchange.py: 1. in Boundary.cc, bid2gid is now generated
in a consistent way with assigning boundary.X arrays. 2. in
ExchangerClass.cc, imposeBC method is added and tested.
2003-09-22 05:24 ces74
* lib/Common/element_definitions.h, module/Exchanger/Boundary.cc,
module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h, module/Exchanger/misc.cc,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
tests/exchange.py: All the functions needed by Exchanger are
created and tested.
2003-09-20 08:32 ces74
* lib/Common/element_definitions.h, module/Exchanger/Boundary.cc,
module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h, module/Exchanger/bindings.cc,
module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h,
module/Exchanger/misc.cc,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
tests/exchange.py: intermediate updates
2003-09-19 13:32 ces74
* module/Exchanger/Boundary.cc,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h, module/Exchanger/bindings.cc,
module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h,
module/Exchanger/misc.cc,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
tests/exchange.py: send/receive temperature between leader
processors tested.
2003-09-19 05:37 ces74
* module/Exchanger/ExchangerClass.h: *** empty log message ***
2003-09-19 05:03 ces74
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/bindings.cc, module/Exchanger/misc.cc,
module/Exchanger/misc.h,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
tests/exchange.py: intermediate updates
2003-09-19 00:16 puru
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/ExchangerClass.h: Exchanger for Coarse grid has
been introduced
2003-09-18 23:12 puru
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/FineGridExchanger.cc: New variables added to
Boundary Class
2003-09-18 06:15 ces74
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
tests/exchange.py: two methods for exchanger added: 'gather' and
'distribute'
2003-09-12 23:25 tan2
* tests/citcomsfull.py, tests/citcomsregional.py,
tests/coupledcitcoms.py: test
2003-09-12 05:10 tan2
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h: 1. change argument lists
of createBoundary(), sendBoundary(), receiveBoundary() and
mapBoundary() 2. createBoundary(), sendBoundary(),
receiveBoundary() and mapBoundary() have passed test
2003-09-12 04:56 tan2
* module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h: 1. comment out send() and
receive() declaration 2. change argument list of mapBoundary()
3. fix some bugs in sendVelocities() and receiveVelocities() 4.
comment out reset_target() 5. add some output in constructor
(commented out)
2003-09-12 04:50 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h: add
printX() and printBid2gid() methods
2003-09-12 04:43 tan2
* module/Exchanger/exchangers.cc: change the argument lists of
createBoundary(), sendBoundary(), receiveBoundary(), and
mapBoundary()
2003-09-12 04:41 tan2
* module/Exchanger/misc.cc: add All_variables data, which is
required by Boundary object
2003-09-12 04:33 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: findBoundary
will not return boundary object
2003-09-12 04:32 tan2
* tests/exchange.py: change output slightly
2003-09-11 11:07 puru
* module/Exchanger/Boundary.cc: duplication of nodes on edges and
vertices are removed
2003-09-11 06:40 puru
* module/Exchanger/Boundary.cc: Duplication of nodes on edges and
vertices has been fixed
2003-09-11 04:11 puru
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h: Boundary mapping completed
2003-09-11 01:51 ces74
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/ExchangerClass.cc: Added: functions to
send/receive velocities between leader and workers
2003-09-10 11:03 tan2
* module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h, module/Exchanger/bindings.cc,
module/Exchanger/exchangers.cc, module/Exchanger/exchangers.h:
1. finish exchangeTimestep(), wait() and nowait() to Exchanger,
test passed 2. add skeleton of sendTemperature() and
receiveTemperature() to Exchanger 3. add bindings to the
functions above
2003-09-10 11:01 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py: finish
stableTimestep() and NewStep()
2003-09-10 11:00 tan2
* tests/exchange.py: 1. add test for stableTimestep() and NewStep()
2003-09-10 04:08 tan2
* tests/exchange.py: reflecting changes in Exchanger.py
2003-09-10 04:04 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py, pyre/Coupler.py,
pyre/Coupler/Coupler.py, pyre/Solver/Solver.py: 1. remove
exchanger.initialize() 2. change argument lists of
initTemperature() and applyBoundaryConditions() 3. add more
calls to Coupler in Solver
2003-09-10 03:57 tan2
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h, module/Exchanger/misc.cc,
module/Exchanger/misc.h: 1. add boundary as a data member of
Exchanger 2. assign boundary at sendBoundary and receiveBoundary
3. change argument list of gather, distribute, send and receive
functions
2003-09-10 03:41 puru
* module/Exchanger/FineGridExchanger.cc: global_defs.h has been
included
2003-09-10 03:07 puru
* module/Exchanger/FineGridExchanger.cc: fixed bug
2003-09-10 03:03 puru
* module/Exchanger/FineGridExchanger.cc: size in
FineGridExchanger::createBoundary has been set
2003-09-10 01:25 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: 1. declare map() in Boundary
class 2. changer argument list of several Exchanger functions
2003-09-09 09:35 tan2
* module/Exchanger/Boundary.cc, module/Exchanger/Boundary.h,
module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h, module/Exchanger/Make.mm,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h: 1. move declartion and definition
of Boundary class to seperated files (was in ExchangerClass.h)
2. add boundary creation and exchanging functions 3. add
bindings to boundary creation and exchanging functions
2003-09-09 09:28 tan2
* tests/exchange.py: add test to Exchanger.findBoundary()
2003-09-09 09:27 tan2
* pyre/Layout.py, pyre/Layout/Layout.py: createIntercomm() returns
mpi.world()
2005-08-23 03:11 unknown_user
* module/Exchanger/Exchanger.cc, module/Exchanger/Exchanger.h:
[vcp] delete of edited revision with dead state
2003-09-09 04:47 tan2
* module/Exchanger/CoarseGridExchanger.cc,
module/Exchanger/CoarseGridExchanger.h,
module/Exchanger/Exchanger.cc, module/Exchanger/Exchanger.h,
module/Exchanger/ExchangerClass.cc,
module/Exchanger/ExchangerClass.h,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h, module/Exchanger/Make.mm,
module/Exchanger/bindings.cc, module/Exchanger/exchangers.cc,
module/Exchanger/exchangers.h, module/Exchanger/misc.cc: 1.
change filename Exchanger.* -> ExchangerClass.* to avoid import
problem in python 2. add constructors to Exchanger and its child
class 3. add bindings to constructors
2003-09-09 04:38 tan2
* module/Make.mm: add Exchanger module`
2003-09-09 04:37 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py:
createExchanger() is done
2003-09-09 04:35 tan2
* tests/exchange.py: test for Exchanger component
2003-09-07 06:44 tan2
* module/Exchanger, module/Exchanger/Exchanger.cc,
module/Exchanger/Exchanger.h,
module/Exchanger/Exchangermodule.cc,
module/Exchanger/FineGridExchanger.cc,
module/Exchanger/FineGridExchanger.h, module/Exchanger/Make.mm,
module/Exchanger/bindings.cc, module/Exchanger/bindings.h,
module/Exchanger/exceptions.cc, module/Exchanger/exceptions.h,
module/Exchanger/misc.cc, module/Exchanger/misc.h: original
source
2003-09-06 02:49 tan2
* pyre/Components/Exchanger/CoarseGridExchanger.py,
pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/FineGridExchanger.py,
pyre/Components/Exchanger/Make.mm,
pyre/Components/Exchanger/__init__.py, pyre/CoupledApp.py,
pyre/Coupler.py, pyre/Coupler/Coupler.py,
pyre/Coupler/__init__.py, pyre/Layout.py, pyre/Layout/Layout.py,
pyre/Layout/__init__.py, pyre/Solver/FullSolver.py,
pyre/Solver/RegionalSolver.py, pyre/Solver/Solver.py: add
skeletons of coupler and exchanger, change application, layout,
and solver accordingly.
2005-08-23 03:10 unknown_user
* pyre/FullApp.py, pyre/RegionalApp.py: [vcp] delete of edited
revision with dead state
2003-09-06 02:26 tan2
* pyre/FullApp.py, pyre/RegionalApp.py: obsolete
2005-08-23 03:10 unknown_user
* pyre/CoupledRegionalApp.py: [vcp] delete of edited revision with
dead state
2003-09-06 02:25 tan2
* pyre/CoupledRegionalApp.py: obsolete
2003-09-04 04:18 tan2
* pyre/CoupledApp.py, pyre/SimpleApp.py: 1. change layout() to
findLayout() 2. change calling sequence in initialize()
2003-09-04 04:16 tan2
* pyre/Layout.py, pyre/Layout/Layout.py: 1. change layout() to
initialize() 2. create intercommunicator (not finished)
2003-09-04 04:13 tan2
* pyre/Controller.py, pyre/Controller/Controller.py: add
Controller.initialize()
2003-09-04 04:08 tan2
* pyre/Solver/Solver.py: Solver is now "coupler-awared". It will
initialize/launch coupler and call coupler.stableTimestep() and
coupler.applyBoundaryConditions() if necessary.
2003-09-03 11:02 ces74
* examples/Full/velbc/README: Typos fixed.
2003-09-03 11:01 ces74
* examples/Regional/velbc/README,
examples/Regional/velbc/velbc_regional.tar.gz: 1. Velbc example
files are now tarred and compressed. 2. README file explains how
to untar the provided velbc archive and the naming scheme of the
velbc files.
2003-09-03 10:57 ces74
* examples/Full/input.sample, examples/Full/velbc,
examples/Full/velbc/README,
examples/Full/velbc/velbc_full.tar.gz: 1. input.sample has been
modified to show how to read in velocity b.c. from files. 2. The
gzipped tar file, velbc_full.tar.gz, contains velbc files for
each M.Y. and for each sphereical cap. 3. README explains how to
untar the velbc files and their naming scheme.
2003-09-03 07:23 ces74
* examples/Regional/input.sample, examples/Regional/velbc,
examples/Regional/velbc/velbc_regional40,
examples/Regional/velbc/velbc_regional41: 1. The example input
file is modified to show how to use velbc files. 2. velbc
directory is added together with velbc examples.
2003-09-02 01:30 ces74
* lib/Common/Problem_related.c, lib/Full/Make.mm,
lib/Full/Read_input_from_files.c, lib/Regional/Make.mm,
lib/Regional/Read_input_from_files.c: 1. The function to read in
velocity boundary conditions for every My is removed from
Common/Problem_related.c. 2. A new file, Read_input_from_files.c
is added to lib/Full/ and lib/Regional/. This file contains a
sinlge function 'read_input_files_for_timesteps'. 3.
Full/Make.mm and Regional/Make.mm have been changed accordingly.
2003-09-01 09:02 ces74
* drivers/Full/Make.mm, drivers/Regional/Make.mm: A bug fixed in
the Makefiles: The rule for linking binaries, CitcomSFull and
CitcomSRegional, had libCitcomSCommon.a and libCitcomSFull(or
Regional).a as dependencies. --> now these are treated as
libraries to which Citcom.o is linked.
2005-08-23 03:10 unknown_user
* pyre/Components/Coupler.py, pyre/Components/Exchanger.py: [vcp]
delete of edited revision with dead state
2003-08-30 07:45 tan2
* pyre/Components/Coupler.py, pyre/Components/Exchanger.py,
pyre/Components/Make.mm, pyre/Make.mm: change directory structure
2003-08-30 07:44 tan2
* pyre/Components/Exchanger/Exchanger.py,
pyre/Components/Exchanger/Make.mm,
pyre/Components/Exchanger/__init__.py: original source
2003-08-30 07:39 tan2
* pyre/Components/Exchanger,
pyre/Components/Exchanger/Exchanger.py, pyre/CoupledApp.py:
original source
2003-08-30 07:37 tan2
* pyre/Coupler, pyre/Coupler/Make.mm, pyre/Coupler/__init__.py:
original source
2003-08-30 07:35 tan2
* pyre/Layout, pyre/Layout.py, pyre/Layout/Layout.py,
pyre/Layout/Make.mm, pyre/Layout/__init__.py: original source
2003-08-30 07:29 ces74
* pyre/Components/Advection_diffusion/Advection_diffusion.py:
'maxadvtime' is removed from Advection_diffusion.inventory.
2003-08-30 07:27 ces74
* pyre/Components/Param.py: The following five parameters are
removed from the Param.inventory. minstep, maxstep, maxtotstep,
storage_spacing, cpu_limits_in_seconds
2003-08-30 07:24 ces74
* drivers/Citcom.c: 1. A step is added to decide whether to
proceed time-marching. 2. max_dimensionless_time is not a
criterion for time-marching any more.
2003-08-30 07:19 ces74
* lib/Common/Advection_diffusion.c: The following parameters are
no more used in PG_timestep_solve: minstep, maxstep, and
maxtotstep
2003-08-30 03:41 tan2
* pyre/SimpleApp.py, pyre/Solver/FullSolver.py,
pyre/Solver/RegionalSolver.py, pyre/Solver/Solver.py: use new
interface of Facilities
2003-08-30 03:40 tan2
* pyre/Facilities/Mesher.py, pyre/Facilities/Solver.py,
pyre/Facilities/TSolver.py, pyre/Facilities/VSolver.py: change
argument list of __init__() to be compatible with pyre facility
2003-08-30 02:46 tan2
* pyre/Facilities/Make.mm, pyre/Facilities/Solver.py,
pyre/SimpleApp.py: add Solver facility and use it in SimpleApp.py
2003-08-30 01:33 tan2
* pyre/Controller.py, pyre/Controller/Controller.py: 1. change
march() so that final step is saved 2. remove
run_init_simulation() 3. change the argument list of save()
2003-08-30 01:31 tan2
* pyre/Solver/Solver.py: merge run_init_simulation() with launch()
2003-08-30 01:06 tan2
* pyre/SimpleApp.py, pyre/Solver/Solver.py: communicator is
assigned in Application
2003-08-29 07:43 tan2
* pyre/Make.mm: add SimpleApp.py
2003-08-29 07:08 tan2
* pyre/SimpleApp.py, tests/citcomsregional.py: 1. add SimpleApp,
which using Controller and Solver componets 2. change
citcomsregional.py accordingly
2003-08-29 06:58 tan2
* pyre/Controller.py, pyre/Controller/Controller.py,
pyre/Solver/Solver.py: fix typos
2003-08-29 06:18 ces74
* pyre/Solver/Solver.py: bug fixed in the 'advance' method:
tsolver and vsolver are now defined before being used.
2003-08-29 06:12 ces74
* pyre/Controller/__init__.py: bug fixed: Controller is now
imported before being used.
2003-08-29 06:10 ces74
* pyre/Make.mm: Controller is added to 'BLD_DIRS'
2003-08-29 06:04 ces74
* pyre/Controller.py, pyre/Controller/Controller.py,
pyre/Controller/Make.mm, pyre/Controller/__init__.py,
pyre/Solver/Solver.py: 1. Controller.py modified:
self.solver.start_simulation --> self.solver.launch 2. Solver.
py modified: self.start_simulation --> self.launch 3. Make.mm
and __init__.py added to CitcomS/pyre/Controller/
2003-08-29 05:53 ces74
* pyre/Controller, pyre/Controller.py,
pyre/Controller/Controller.py: Controller.py newly added. It's a
derivation from pyre/components/SimulationController.py.
2003-08-29 05:49 ces74
* pyre/Solver/Solver.py: method endSimulation modified:
endSimulation(self) --> endSimulation(self,step)
2003-08-29 05:37 ces74
* pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Solver/Solver.py: 1. Solver.py modified to be consistent
with 'Controller'. 2. Advection_diffusion.py A new method,
'launch', runs PG_timestep_init(). The '_solve' method now
executes only PG_timestep_solve()
2005-08-23 03:09 unknown_user
* pyre/Citcom.py, pyre/CitcomSFull.py, pyre/CitcomSRegional.py:
[vcp] delete of edited revision with dead state
2003-08-28 05:24 tan2
* pyre/Citcom.py, pyre/CitcomSFull.py, pyre/CitcomSRegional.py,
pyre/FullApp.py, pyre/Make.mm, pyre/RegionalApp.py,
pyre/Solver/FullSolver.py, pyre/Solver/Make.mm,
pyre/Solver/RegionalSolver.py, pyre/Solver/Solver.py,
pyre/Solver/__init__.py: 1. move and rename files: Citcom.py ->
Solver/Solver.py CitcomSFull.py -> Solver/FullSolver.py
CitcomSRegional.py -> Solver/RegionalSolver.py 2. add Solver
module 3. change Make.mm, FullApp.py and RegionalApp.py
accordingly
2005-08-23 03:08 unknown_user
* pyre/Components/Parallel.py: [vcp] delete of edited revision
with dead state
2003-08-28 03:52 tan2
* pyre/Citcom.py, pyre/CitcomSFull.py, pyre/CitcomSRegional.py,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Advection_diffusion/__init__.py,
pyre/Components/BC.py, pyre/Components/CitcomComponent.py,
pyre/Components/Const.py, pyre/Components/IC.py,
pyre/Components/Parallel.py, pyre/Components/Param.py,
pyre/Components/Phase.py, pyre/Components/Sphere/FullSphere.py,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Sphere/Sphere.py,
pyre/Components/Sphere/__init__.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/__init__.py,
pyre/Components/Visc.py, pyre/CoupledRegionalApp.py,
pyre/Solver/FullSolver.py, pyre/Solver/RegionalSolver.py,
pyre/Solver/Solver.py: simplified components layout
2003-08-27 03:58 tan2
* pyre/Components/Advection_diffusion/Advection_diffusion.py: add
stable_timestep() method
2003-08-27 03:56 tan2
* lib/Common/Advection_diffusion.c,
lib/Common/advection_diffusion.h, module/Regional/advdiffu.cc,
module/Regional/advdiffu.h, module/Regional/bindings.cc: add
stable_timestep() to lib/ and its binding to module/
2003-08-26 02:34 tan2
* pyre/CitcomSFull.py, pyre/FullApp.py, pyre/Solver/FullSolver.py:
add components CitcomSRegional and CitcomSFull
2005-08-23 03:08 unknown_user
* pyre/CitcomApp.py: [vcp] delete of edited revision with dead
state
2003-08-26 02:16 tan2
* pyre/Citcom.py, pyre/CitcomApp.py, pyre/CitcomSRegional.py,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Sphere/Sphere.py,
pyre/Components/Stokes_solver/Incompressible.py, pyre/Make.mm,
pyre/RegionalApp.py, pyre/Solver/RegionalSolver.py,
pyre/Solver/Solver.py: add components CitcomSRegional and
CitcomSFull
2003-08-23 05:35 tan2
* pyre/Citcom.py, pyre/CitcomApp.py, pyre/CitcomSFull.py,
pyre/CitcomSRegional.py, pyre/FullApp.py, pyre/RegionalApp.py,
pyre/Solver/FullSolver.py, pyre/Solver/RegionalSolver.py,
pyre/Solver/Solver.py: fix bug introduced by previous check-in
* module/Regional/bindings.cc, module/Regional/setProperties.cc,
module/Regional/setProperties.h: fix typo
2005-08-23 03:07 unknown_user
* pyre/Components/Stokes_solver/Imcompressible.py: [vcp] delete of
edited revision with dead state
2003-08-23 05:24 tan2
* pyre/Components/Stokes_solver/Imcompressible.py: rename file
2003-08-23 05:21 tan2
* drivers/Citcom.c: output is performed every 'storage_spacing'
time step
2003-08-23 05:19 tan2
* tests/citcomsfull.py, tests/citcomsregional.py,
tests/coupledcitcoms.py: *** empty log message ***
2005-08-23 03:07 unknown_user
* pyre/RadiusDepth.py: [vcp] delete of edited revision with dead
state
2003-08-23 05:18 tan2
* pyre/Citcom.py, pyre/CitcomApp.py, pyre/CitcomSFull.py,
pyre/CitcomSRegional.py, pyre/Components/Coupler.py,
pyre/Components/Exchanger.py, pyre/Components/Make.mm,
pyre/CoupledRegionalApp.py, pyre/FullApp.py, pyre/Make.mm,
pyre/RadiusDepth.py, pyre/RegionalApp.py,
pyre/Solver/FullSolver.py, pyre/Solver/RegionalSolver.py,
pyre/Solver/Solver.py: a small step toward coupled application
2003-08-23 05:16 tan2
* pyre/Facilities/VSolver.py: *** empty log message ***
2003-08-23 05:14 tan2
* pyre/Components/Stokes_solver/Imcompressible.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Make.mm,
pyre/Components/Stokes_solver/__init__.py: fix typo
2003-08-21 02:18 tan2
* lib/Common/Instructions.c, lib/Common/convection_variables.h,
lib/Common/global_defs.h: remove several obsolelte variables
2003-08-21 01:54 tan2
* lib/Regional/Boundary_conditions.c: add open_top velocity
boundary condition
2003-08-20 09:45 tan2
* tests/citcomsfull.py, tests/citcomsregional.py: determine
staging.nodes from input parameters automatically
2003-08-20 04:24 tan2
* pyre/Citcom.py, pyre/CitcomApp.py,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/CitcomComponent.py,
pyre/Components/Sphere/FullSphere.py,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Stokes_solver/Imcompressible.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Solver/Solver.py: create a python variable
CitcomApp.all_variables, which holds the C pointer "struct
All_varialbes *E". CitcomApp.all_variables is passed as an
argument to most CitcomModule functions.
2003-08-20 04:21 tan2
* module/Regional/advdiffu.cc, module/Regional/mesher.cc,
module/Regional/misc.cc, module/Regional/outputs.cc,
module/Regional/setProperties.cc,
module/Regional/stokes_solver.cc: remove global declaration of
"struct All_variables *E", E is passed as an argument to all
functions.
2003-08-20 04:20 tan2
* drivers/Citcom.c, lib/Common/Citcom_init.c,
lib/Common/Instructions.c, lib/Common/citcom_init.h: 1. remove
declaration of "extern struct All_variables *E" in citcom_init.h
2. E is allocated in Citcom_init() and returned to main() 3.
change other files accordingly.
2003-08-16 01:59 tan2
* lib/Common/Drive_solvers.c, lib/Common/drive_solvers.h: ***
empty log message ***
2003-08-16 01:56 tan2
* module/Regional/bindings.cc, module/Regional/stokes_solver.cc,
module/Regional/stokes_solver.h: remove obsolete bindings to
general_stokes_solver_*()
* module/Regional/setProperties.cc,
module/Regional/setProperties.h: change function name:
pyCitcom_Stokes_solver_set_properties() ->
pyCitcom_Imcompressible_set_properties()
2003-08-16 01:47 tan2
* pyre/Components/Stokes_solver/Imcompressible.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/__init__.py: merge
ImcompressibleNewtonian() and ImcompressibleNonNewtonian() to
Imcompressible(), Stokes_solver() becomes obsolete.
2003-08-15 07:28 tan2
* lib/Common/Convection.c, lib/Common/Element_calculations.c,
lib/Common/General_matrix_functions.c, lib/Common/global_defs.h,
lib/Full/Lith_age.c, lib/Regional/Boundary_conditions.c,
lib/Regional/Lith_age.c: eliminate static variables
2003-08-15 05:50 tan2
* module/Regional/bindings.cc, module/Regional/mesher.cc,
module/Regional/stokes_solver.cc,
module/Regional/stokes_solver.h,
pyre/Components/Stokes_solver/Stokes_solver.py: reflect the
change in general_stokes_solver()
2003-08-15 05:43 tan2
* lib/Common/Construct_arrays.c, lib/Common/Drive_solvers.c,
lib/Common/Instructions.c: 1. change the flowline of
general_stokes_solver() 2. eliminate static variables in
construct_stiffness_B_matrix() 3. add call to
general_stokes_solver_setup() in read_instructions()
2003-08-15 01:36 tan2
* lib/Full/Parallel_related.c: elimanate static variables.
2003-08-15 01:35 tan2
* module/Full/Make.mm, module/Regional/Make.mm: add
$(TOOLS_DIR)/lib to library path
2003-08-13 08:22 tan2
* module/Full/Make.mm, module/Regional/Make.mm: change the library
link paths
2003-08-13 03:43 ces74
* drivers/Full/Make.mm, drivers/Regional/Make.mm: Modified in
order to use separate static libraries: libCitcomSCommon.a,
libCitcomSFull.a, and libCitcomSRegional.a
2003-08-13 03:40 ces74
* lib/Common/Initial_temperature.c: Typo fixed: "Missing input
parameter: 'perturbml' -> "Missing input parameter: 'perturbl'
2003-08-12 23:54 ces74
* lib/Full/Make.mm, lib/Regional/Make.mm: a bug fixed: lib/Common
is now included in paths for header files.
2003-08-12 23:34 ces74
* lib/Common/Make.mm, lib/Full/Make.mm, lib/Make.mm,
lib/Regional/Make.mm, module/Full/Make.mm,
module/Regional/Make.mm: Makefiles in module/ and lib/ modified
to create three separate static libraries: libCitcomSCommon.a,
libCitcomSFull.a, and libCitcomSRegional.a These libraries are
used when linking *.so objects.
2003-08-10 03:25 tan2
* lib/Common/Instructions.c, lib/Full/Version_dependent.c,
lib/Regional/Version_dependent.c: unifying
read_initial_settings()
2003-08-09 05:51 tan2
* lib/Common/Make.mm, lib/Full/Make.mm, lib/Full/Output.c,
lib/Regional/Make.mm, lib/Regional/Obsolete.c,
lib/Regional/Output.c: unifying
2003-08-09 05:34 tan2
* lib/Common/Make.mm, lib/Full/Make.mm,
lib/Full/Process_buoyancy.c, lib/Regional/Make.mm,
lib/Regional/Process_buoyancy.c: unifying
2005-08-23 03:05 unknown_user
* pyre/Components/Advection_diffusion/Temperature_diffadv.py:
[vcp] delete of edited revision with dead state
2003-08-09 05:13 tan2
* examples/Full/input.sample, examples/Full/machine.sample,
pyre/Components/Advection_diffusion/Temperature_diffadv.py:
obsolete
2003-08-09 05:03 tan2
* lib/Common/Output.c, lib/Common/Problem_related.c,
lib/Common/Tracer_advection.c, lib/Common/global_defs.h,
lib/Full/Output.c, lib/Full/Parallel_related.c,
lib/Regional/Boundary_conditions.c, lib/Regional/Obsolete.c,
lib/Regional/Output.c, lib/Regional/Parallel_related.c,
lib/Regional/Process_buoyancy.c, lib/Regional/Sphere_related.c,
lib/Regional/Version_dependent.c, module/Regional/bindings.cc,
module/Regional/setProperties.cc,
module/Regional/setProperties.h: 1. eliminate several global
variables- parallel: mst, nproc[xyz]l, me_locl sphere:
local_capid, pid_surf, cap.connection 2. change the way
Regional/Parallel_related.c used to assign me_loc and
PROCESSOR.pass
2003-08-08 05:05 tan2
* module/Make.mm: default action will link files from Regional/ to
Full/
2003-08-08 04:34 tan2
* module/Regional/setProperties.cc: only processor 0 can write to
stderr now Note: device /dev/null and /dev/stderr are used, may
not portable to non-unix platform
2003-08-08 02:49 tan2
* drivers/Citcom.c, lib/Common/Instructions.c,
lib/Common/Sphere_harmonics.c, lib/Common/parallel_related.h,
lib/Full/Obsolete.c, lib/Full/Parallel_related.c,
lib/Regional/Obsolete.c, lib/Regional/Parallel_related.c,
module/Regional/mesher.cc: *** empty log message ***
2003-08-08 01:41 tan2
* drivers/Full/Make.mm, drivers/Full/local.def, drivers/Make.mm,
drivers/Regional/Make.mm, drivers/Regional/local.def,
drivers/local.def, lib/Common/Output.c,
lib/Common/global_defs.h, lib/Full/Output.c,
lib/Full/global_defs.h, lib/Full/lith_age.h, lib/Full/output.h,
lib/Full/parallel_related.h, lib/Make.mm,
lib/Regional/global_defs.h, lib/Regional/lith_age.h,
lib/Regional/output.h, lib/Regional/parallel_related.h,
lib/local.def: move header files global_defs.h, lith_age.h,
output.h, and parallel_related.h to Common/
2003-08-07 04:09 tan2
* lib/Common/Make.mm, lib/Full/Make.mm,
lib/Full/Problem_related.c, lib/Regional/Make.mm,
lib/Regional/Problem_related.c: unify Problem_related.c
2003-08-07 04:00 tan2
* lib/Common/Initial_temperature.c, lib/Common/Make.mm,
lib/Common/convection_variables.h,
lib/Full/Initial_temperature.c, lib/Full/Make.mm,
lib/Full/Version_dependent.c, lib/Full/initial_temperature.h,
lib/Regional/Initial_temperature.c, lib/Regional/Make.mm,
lib/Regional/Version_dependent.c,
lib/Regional/initial_temperature.h,
module/Regional/setProperties.cc: unify Initial_temperature.c
and initial_temperature.h
2003-08-07 01:56 tan2
* lib/Common/Output.c, lib/Full/Obsolete.c, lib/Full/Output.c:
move obsolete functions from Output.c to Obsolete.c
2003-08-07 01:47 tan2
* lib/Common/Global_operations.c, lib/Common/Make.mm,
lib/Full/Global_operations.c, lib/Full/Make.mm,
lib/Full/Obsolete.c, lib/Regional/Global_operations.c,
lib/Regional/Make.mm, lib/Regional/Obsolete.c: unify two
versions of Global_operations.c, and put it to Common/
2003-08-03 07:43 tan2
* module/Regional/setProperties.cc: bug fixed,
tests/citcomsfull.py now gives correct result
2003-08-02 05:57 tan2
* tests/citcomsfull.py, tests/hrothgar.py: to run a Full version
of CitcomS, use the following command: ./citcomsfull.py
--staging=hrothgar --param.datafile=/SOME_PATH/test
2005-08-23 03:02 unknown_user
* module/local.def: [vcp] delete of edited revision with dead state
2003-08-02 05:53 tan2
* module/Make.mm, module/Regional/Regionalmodule.cc,
module/Regional/advdiffu.cc, module/Regional/advdiffu.h,
module/Regional/bindings.cc, module/Regional/bindings.h,
module/Regional/exceptions.cc, module/Regional/exceptions.h,
module/Regional/local.def, module/Regional/mesher.cc,
module/Regional/mesher.h, module/Regional/misc.cc,
module/Regional/misc.h, module/Regional/outputs.cc,
module/Regional/outputs.h, module/Regional/setProperties.cc,
module/Regional/setProperties.h,
module/Regional/stokes_solver.cc,
module/Regional/stokes_solver.h, module/local.def: make some
changes in function names so that both Full and Regioanl
versions can use the same source code.
2005-08-23 03:02 unknown_user
* module/Full/bindings.cc, module/Full/bindings.h,
module/Full/exceptions.cc, module/Full/exceptions.h,
module/Full/misc.cc, module/Full/misc.h: [vcp] delete of edited
revision with dead state
2003-08-02 05:52 tan2
* module/Full/Fullmodule.cc, module/Full/Make.mm,
module/Full/bindings.cc, module/Full/bindings.h,
module/Full/exceptions.cc, module/Full/exceptions.h,
module/Full/local.def, module/Full/misc.cc, module/Full/misc.h:
module/Full and module/Regional now use the same files, except
$(TYPE)module.cc and Make.mm. ***** Important ***** When you
check out this directory (module/Full) in the first time, do 'mm
link' in this directory. This will hard-link every source files
in module/Regional to this directory.
2003-08-02 05:25 tan2
* lib/Full/global_defs.h: add some variable declaration which are
only used by regional version
2003-08-02 05:24 tan2
* pyre/Citcom.py, pyre/CitcomApp.py, pyre/CitcomSFull.py,
pyre/CitcomSRegional.py, pyre/FullApp.py, pyre/Make.mm,
pyre/RegionalApp.py, pyre/Solver/FullSolver.py,
pyre/Solver/RegionalSolver.py, pyre/Solver/Solver.py: 1. add
base class CitcomApp 2. derive FullApp and RegionalApp form
CitcomApp
2003-08-02 02:05 tan2
* pyre/Components/Sphere/FullSphere.py,
pyre/Components/Sphere/Make.mm,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Sphere/Sphere.py,
pyre/Components/Sphere/__init__.py, pyre/Facilities/Mesher.py:
1. add a base class Sphere for component Sphere 2. add a new
component FullSphere for Full version 3. change Make.mm,
__init__.py, and the binder of facility Mesher accordingly
2003-08-01 02:41 tan2
* lib/Common/General_matrix_functions.c,
lib/Common/Initial_temperature.c, lib/Common/Instructions.c,
lib/Full/Initial_temperature.c, lib/Full/Parallel_related.c,
lib/Regional/Initial_temperature.c: bug fix
2003-08-01 02:40 tan2
* lib/Common/Process_buoyancy.c, lib/Full/Obsolete.c,
lib/Full/Process_buoyancy.c: remove obsolete function
2003-07-30 03:54 tan2
* drivers/Make.mm, lib/Make.mm: *** empty log message ***
* lib/Common/Output.c, lib/Common/Process_buoyancy.c,
lib/Full/Boundary_conditions.c, lib/Full/Global_operations.c,
lib/Full/Initial_temperature.c, lib/Full/Lith_age.c,
lib/Full/Make.mm, lib/Full/Output.c,
lib/Full/Parallel_related.c, lib/Full/Problem_related.c,
lib/Full/Process_buoyancy.c, lib/Full/Version_dependent.c,
lib/Full/global_defs.h, lib/Full/initial_temperature.h,
lib/Full/lith_age.h, lib/Full/output.h,
lib/Full/parallel_related.h: copy changes in Regional version to
Full version
2003-07-29 06:03 tan2
* pyre/CitcomSRegional.py,
pyre/Components/Advection_diffusion/Make.mm,
pyre/Components/Make.mm, pyre/Components/Sphere/Make.mm,
pyre/Components/Stokes_solver/Make.mm,
pyre/Facilities/Mesher.py, pyre/Facilities/TSolver.py,
pyre/Facilities/VSolver.py, pyre/Make.mm, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: change directory structures
2003-07-29 04:57 tan2
* lib/Common/Convection.c, lib/Common/Solver_multigrid.c,
module/Regional/bindings.cc, module/Regional/outputs.cc,
module/Regional/outputs.h, module/Regional/setProperties.cc,
pyre/CitcomSRegional.py,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Stokes_solver/Stokes_solver.py,
pyre/RegionalApp.py, pyre/Solver/RegionalSolver.py: 1.
RegionalApp._setProperties() is called before Component.init()
2. some cosmetics
2003-07-27 04:47 tan2
* drivers/Citcom.c, lib/Common/Instructions.c,
lib/Common/Problem_related.c, lib/Common/Process_velocity.c,
lib/Common/output.h, lib/Regional/Obsolete.c,
lib/Regional/Output.c, lib/Regional/Problem_related.c,
lib/Regional/Process_buoyancy.c,
lib/Regional/Version_dependent.c, lib/Regional/output.h,
module/Regional/bindings.cc, module/Regional/mesher.cc,
module/Regional/misc.cc, module/Regional/misc.h,
module/Regional/outputs.cc, module/Regional/outputs.h,
pyre/CitcomSRegional.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: complete output part
2003-07-26 03:43 tan2
* drivers/Citcom.c, lib/Common/Advection_diffusion.c,
lib/Common/Initial_temperature.c,
lib/Regional/Initial_temperature.c, module/Regional/advdiffu.cc,
module/Regional/bindings.cc, module/Regional/mesher.cc,
module/Regional/misc.cc, module/Regional/misc.h,
module/Regional/setProperties.cc, pyre/CitcomSRegional.py,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Advection_diffusion/__init__.py,
pyre/Components/BC.py, pyre/Components/Const.py,
pyre/Components/Param.py, pyre/Components/Phase.py,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Stokes_solver/Stokes_solver.py,
pyre/Components/Visc.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: complete VSolver and TSolver
2003-07-26 02:17 tan2
* lib/Common/Parsing.c: bug fix
2003-07-26 02:13 tan2
* lib/Common/Parsing.c: cosmetic output
2003-07-25 03:10 tan2
* lib/Common/Global_operations.c,
lib/Regional/Global_operations.c,
lib/Regional/Parallel_related.c, module/Regional/bindings.cc,
module/Regional/mesher.cc, module/Regional/mesher.h,
module/Regional/setProperties.cc, pyre/CitcomSRegional.py,
pyre/Components/Sphere/RegionalSphere.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: finish RegionalSphere.run(), it
gives identical results as stand-alone CitcomSRegional
2003-07-25 00:46 tan2
* pyre/CitcomSRegional.py,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Advection_diffusion/__init__.py,
pyre/Components/BC.py, pyre/Components/CitcomComponent.py,
pyre/Components/Const.py, pyre/Components/IC.py,
pyre/Components/Make.mm, pyre/Components/Parallel.py,
pyre/Components/Param.py, pyre/Components/Phase.py,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Sphere/__init__.py,
pyre/Components/Stokes_solver/Imcompressible.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Stokes_solver.py,
pyre/Components/Stokes_solver/__init__.py,
pyre/Components/Visc.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py, tests/citcomsregional.py,
tests/signon.py: 1. remove passing filename to
RegionalApp.__init__() 2. add new base component
CitcomComponent(), derive every component from CitcomComponent,
the interface to __init__ and setProperties are changed
2003-07-24 07:04 tan2
* module/Regional/advdiffu.cc, module/Regional/advdiffu.h,
module/Regional/bindings.cc, module/Regional/misc.cc,
module/Regional/misc.h,
pyre/Components/Advection_diffusion/Advection_diffusion.py: add
binding of set_convection_defaults()
2003-07-24 06:00 tan2
* lib/Common/Initial_temperature.c,
lib/Common/initial_temperature.h,
lib/Regional/Initial_temperature.c,
lib/Regional/Version_dependent.c,
lib/Regional/initial_temperature.h: seperate input and init
phases of temperature IC
2003-07-24 05:59 tan2
* lib/Common/global_defs.h, lib/Regional/global_defs.h,
module/Regional/setProperties.cc: remove global variables
VERBOSE, DESCRIBE, and BEGINNER
2003-07-24 05:00 tan2
* module/Regional/bindings.cc, module/Regional/setProperties.cc,
module/Regional/setProperties.h, pyre/CitcomSRegional.py,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Const.py, pyre/Components/Parallel.py,
pyre/Components/Param.py,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Stokes_solver/Stokes_solver.py,
pyre/RegionalApp.py, pyre/Solver/RegionalSolver.py: finished
setting properties
2003-07-24 02:00 tan2
* pyre/Components/IC.py: typo fixed
2003-07-23 12:29 ces74
* pyre/Components/BC.py, pyre/Components/Const.py,
pyre/Components/IC.py, pyre/Components/Parallel.py,
pyre/Components/Param.py, pyre/Components/Phase.py,
pyre/Components/Visc.py: '*_set_prop' methods of the 'Regioanl'
module are now called '*_set_properties'.
2003-07-23 12:27 ces74
* lib/Common/global_defs.h, lib/Regional/global_defs.h: New
members of the "CONTROL" and the "All_variables" structure added.
2003-07-23 12:26 ces74
* lib/Common/Initial_temperature.c,
lib/Regional/Initial_temperature.c: Originally local variables,
number_of_perturbations, perturb_ll, perturb_mm, load_depth, and
perturb_mag, are now members of the global "All_variables"
structure.
2003-07-23 12:22 ces74
* lib/Common/Parsing.c: Originally local variables, VERBOSE,
DESCRIBE, and BEGINNER, are now global: members of the
'All_variables' structure.
2003-07-23 12:19 ces74
* module/Regional/bindings.cc, module/Regional/outputs.cc,
module/Regional/stokes_solver.cc: function name changed from
*_set_prop to *_set_properties.
2003-07-23 12:18 ces74
* module/Regional/setProperties.cc,
module/Regional/setProperties.h: Properties for the following
components added: IC, Const, Param, Phase, and Parallel.
2003-07-23 04:58 tan2
* module/Regional/bindings.cc, module/Regional/mesher.cc,
module/Regional/misc.cc, module/Regional/misc.h,
pyre/CitcomSRegional.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: 1. change Citcom_Init() to
citcom_init() (finished) 2. add binding to open info_file
2003-07-23 02:52 tan2
* lib/Common/Advection_diffusion.c, lib/Common/advection.h: ***
empty log message ***
2003-07-22 04:58 ces74
* lib/Common/Drive_solvers.c: Functions uncommented: void
general_stokes_solver_init(struct All_variables *E) void
general_stokes_solver_fini(struct All_variables *E) void
general_stokes_solver_update_velo(struct All_variables *E) void
general_stokes_solver_Unorm(struct All_variables *E, double
*Udot_mag, double *dUdot_mag) void
general_stokes_solver_log(struct All_variables *E, float
Udot_mag, float dUdot_mag, int count)
2003-07-22 04:44 tan2
* lib/Common/output.h, lib/Regional/Boundary_conditions.c,
lib/Regional/Obsolete.c, lib/Regional/Output.c,
lib/Regional/Parallel_related.c, lib/Regional/output.h:
partially eliminate use of static variables
2003-07-19 07:34 tan2
* lib/Common/Global_operations.c, lib/Common/global_defs.h,
lib/Regional/Global_operations.c,
lib/Regional/Parallel_related.c, lib/Regional/global_defs.h: add
communicators E->parallel.horizontal_comm and
E->parallel.vertical_comm and initialize them at
set_horizontal_communicator() and set_vertical_communicator()
2003-07-19 05:15 tan2
* drivers/Citcom.c: change Citcom_Init() to citcom_init()
2003-07-18 07:10 tan2
* lib/Common/Citcom_init.c, lib/Common/Drive_solvers.c,
lib/Common/Element_calculations.c,
lib/Common/General_matrix_functions.c,
lib/Common/Instructions.c, lib/Common/Interuption.c,
lib/Common/Process_velocity.c, lib/Common/Solver_multigrid.c,
lib/Common/Stokes_flow_Incomp.c, lib/Common/Tracer_advection.c,
lib/Common/Viscosity_structures.c, lib/Common/citcom_init.h,
lib/Common/interuption.h: 1. change Citcom_Init() to
citcom_init() 2. add interuption.h, header file of Interuption.c
3. partially eliminate use of static variables
2003-07-18 06:31 tan2
* lib/Common/Global_operations.c,
lib/Regional/Global_operations.c: vnorm_nonnewt() returned NaN
if there was only one material type. bug? fixed.
2003-07-18 04:19 tan2
* lib/Regional/Sphere_related.c: memory-leak fixed
2003-07-17 04:52 tan2
* lib/Common/global_defs.h, lib/Regional/global_defs.h: add
argument declaration for function pointers (necessarily when
linking with C++)
2003-07-17 04:49 tan2
* module/Regional/Make.mm, module/Regional/bindings.cc,
module/Regional/mesher.cc, module/Regional/mesher.h: add
bindings of component RegionalSphere()
2005-08-23 02:55 unknown_user
* pyre/Components/Mesh.py: [vcp] delete of edited revision with
dead state
2003-07-16 04:53 tan2
* pyre/Components/Make.mm, pyre/Components/Mesh.py: component
Mesh() is replaced by component RegionalSphere()
2003-07-16 04:50 tan2
* pyre/CitcomSRegional.py, pyre/Components/Sphere,
pyre/Components/Sphere/Make.mm,
pyre/Components/Sphere/RegionalSphere.py,
pyre/Components/Sphere/__init__.py, pyre/Facilities/Make.mm,
pyre/Facilities/Mesher.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: add new facility Mesher() and its
default component RegionalSphere()
2003-07-16 04:47 tan2
* pyre/Components/Stokes_solver/Stokes_solver.py: typo fixed
2003-07-16 01:17 ces74
* module/Regional/bindings.cc: A missing part of the method talbe
added: set_cg_defaults, set_mg_defaults, set_mg_el_defaults.
2005-08-23 02:55 unknown_user
* pyre/Components/Adv_solver.py: [vcp] delete of edited revision
with dead state
2003-07-16 01:06 ces74
* pyre/Components/Adv_solver.py: Binding for advection-diffusion
solver is now in pyre/Regional/Facilities/TSolver.py
2003-07-16 01:04 ces74
* pyre/Facilities/TSolver.py: Binding of TSolver with a component
(Temperature_diffadv.py) is implemented.
2003-07-16 01:03 ces74
* pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Advection_diffusion/Temperature_diffadv.py,
pyre/Components/Advection_diffusion/__init__.py:
Temperature_diffadv now can call CitcomS subroutines to
initialize and solve for the advection/diffusion of temperature
field.
2003-07-16 01:01 ces74
* pyre/CitcomSRegional.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: modified to initialize the
Advection_diffusion facility
2003-07-15 07:40 tan2
* module/Regional/Make.mm, module/Regional/bindings.cc,
module/Regional/misc.cc, module/Regional/misc.h,
module/Regional/stokes_solver.cc,
module/Regional/stokes_solver.h, pyre/CitcomSRegional.py,
pyre/Components/Stokes_solver/Stokes_solver.py,
pyre/RegionalApp.py, pyre/Solver/RegionalSolver.py: 1. move
bindings related to Stokes_solver() to stokes_solver.cc 2. call
set_cg_defaults()/set_mg_defaults() in Stokes_solver.init()
2003-07-15 04:08 tan2
* lib/Common/Instructions.c, lib/Common/Interuption.c,
lib/Common/Make.mm: move everything related to System Signal to
interuption.c
2003-07-15 02:44 tan2
* module/Regional/setProperties.cc: change helper functions to
templates
2003-07-14 05:58 tan2
* module/Regional/bindings.cc, module/Regional/setProperties.cc,
module/Regional/setProperties.h, pyre/CitcomSRegional.py,
pyre/Components/Visc.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py, tests/signon.py: 1. more helper
functions in setProperties.cc 2. Regional.BC_set_prop() and its
binding 3. RegionalApp._setProperties() 4. some test in singon.py
2005-08-23 02:54 unknown_user
* pyre/Components/Stokes_solver.py: [vcp] delete of edited
revision with dead state
2003-07-10 02:42 tan2
* pyre/CitcomSRegional.py, pyre/Components/Adv_solver.py,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/BC.py, pyre/Components/Const.py,
pyre/Components/IC.py, pyre/Components/Mesh.py,
pyre/Components/Parallel.py, pyre/Components/Param.py,
pyre/Components/Phase.py, pyre/Components/Stokes_solver.py,
pyre/Components/Stokes_solver/Imcompressible.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Stokes_solver.py,
pyre/Components/Visc.py, pyre/Facilities/VSolver.py,
pyre/RegionalApp.py, pyre/Solver/RegionalSolver.py: migrate
toward pythia-0.4
2003-07-04 06:56 ces74
* pyre/CitcomSRegional.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: Typos corrected
2003-07-04 06:52 ces74
* pyre/CitcomSRegional.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: Modified to use the TSolver
facility.
2003-07-04 06:43 ces74
* pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Advection_diffusion/Make.mm,
pyre/Components/Advection_diffusion/Temperature_diffadv.py,
pyre/Components/Advection_diffusion/__init__.py: A component of
"TSoler" facility added. Advection_diffusion.py is a general
class of advection_diffusion solvers. Temperature_diffadv.py is
a solver for temperature field. __init__.py exports
temperature_diffadv under Advection_diffusion module.
2003-07-04 06:40 ces74
* pyre/Facilities/Make.mm, pyre/Facilities/TSolver.py: TSolver
facility added. Make.mm modified accordingly.
2003-06-27 07:15 tan2
* module/Regional/Make.mm, module/Regional/bindings.cc,
module/Regional/setProperties.cc,
module/Regional/setProperties.h, pyre/CitcomSRegional.py,
pyre/Components/BC.py, pyre/Components/Make.mm,
pyre/RegionalApp.py, pyre/Solver/RegionalSolver.py: passing
properties of BC() to C variables
2003-06-27 06:14 tan2
* pyre/Components/Stokes_solver/Imcompressible.py,
pyre/Components/Stokes_solver/Incompressible.py:
ImcompressibleNonNewtonian() is inherited from
ImcompressibleNewtonian() now
* pyre/Components/Stokes_solver/Stokes_solver.py: remove
properties related to viscosity
2003-06-24 04:01 tan2
* pyre/Facilities/VSolver.py: bug fix
2003-06-24 03:54 tan2
* pyre/Components/Stokes_solver/Imcompressible.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Make.mm,
pyre/Components/Stokes_solver/Stokes_solver.py,
pyre/Components/Stokes_solver/__init__.py: 1. Stokes_solver() is
a Component of new facility VSolver() 2. add properties to
Stokes_solver(), including properties belong to (future)
Viscosity component 3. change ImcompressibleNewtonian() and
ImcompressibleNonNewtonian() accordingly
2003-06-24 03:43 tan2
* pyre/Facilities, pyre/Facilities/Make.mm,
pyre/Facilities/VSolver.py, pyre/Facilities/__init__.py: add new
facilities
2003-06-14 00:12 tan2
* pyre/CitcomSRegional.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: add facilities
2003-06-14 00:11 tan2
* tests/citcomsregional.py: tests for facilities
2003-06-13 01:25 tan2
* pyre/Components/__init__.py, pyre/__init__.py: 1. remove
'license_text' 2. add Common/Component/__init__.py
2003-06-12 06:02 tan2
* pyre/Components/Adv_solver.py, pyre/Components/BC.py,
pyre/Components/Const.py, pyre/Components/IC.py,
pyre/Components/Make.mm, pyre/Components/Mesh.py,
pyre/Components/Parallel.py, pyre/Components/Param.py,
pyre/Components/Phase.py, pyre/Components/Stokes_solver.py,
pyre/Components/Visc.py: 1. move all components to new directory
Component/ 2. all components have a new and shorter name 3.
'SimulationSolver' is splited into two components: 'Adv_solver'
and 'Stokes_solver' 4. change Make.mm accordingly
2003-06-08 15:11 tan2
* module/Regional/Make.mm: fixed bug in linking with
'libmpimodule.a' (I don't like this solution though)
2003-06-07 02:04 tan2
* module/Regional/Make.mm, module/Regional/misc.cc: passing mpi
communicator to Citcom_Init()
2003-05-24 00:58 tan2
* tests/asap.py, tests/hrothgar.py: add two staging classes
(copied from specfem_globe/tests/)
2003-05-24 00:49 tan2
* module/Regional/misc.cc, module/Regional/outputs.cc: append
function name to the argument of PyArg_ParseTuple()
2003-05-24 00:07 tan2
* module/Make.mm: fix a typo
2003-05-23 12:12 ces74
* module/Regional/advdiffu.cc, module/Regional/advdiffu.h,
module/Regional/bindings.cc, module/Regional/misc.cc,
module/Regional/misc.h: test methods are removed. class
PG_timestep now has only two methods: init and solve
2003-05-23 12:11 ces74
* lib/Common/Drive_solvers.c,
lib/Common/General_matrix_functions.c,
lib/Common/Stokes_flow_Incomp.c, lib/Common/drive_solvers.h:
test functions removed.
2003-05-23 11:47 ces74
* lib/Common/Advection_diffusion.c, lib/Common/Drive_solvers.c,
lib/Common/General_matrix_functions.c,
lib/Common/Stokes_flow_Incomp.c,
lib/Common/advection_diffusion.h, lib/Common/drive_solvers.h:
Fixed a bug related to deciding the validity of velocity
solution in General_matrix_functions.c Functions reorganized for
PG_timestep class.
2003-05-23 11:22 ces74
* pyre/Components/Advection_diffusion/Advection_diffusion.py:
class PG_timestep now has only two methods: .init and .solve
2003-05-23 09:41 tan2
* module/Regional/outputs.cc, pyre/CitcomSRegional.py,
pyre/RegionalApp.py, pyre/Solver/RegionalSolver.py: add class
OutputVisc and its bindings
2003-05-23 07:46 ces74
* lib/Common/Advection_diffusion.c, lib/Common/Make.mm,
lib/Common/advection_diffusion.h: bug in Make.mm fixed.
advection_diffusion.h is now included in Advection_diffusion.c
2003-05-23 06:18 tan2
* lib/Common/output.h, lib/Regional/Output.c,
lib/Regional/output.h: *** empty log message ***
2003-05-23 06:10 tan2
* module/Regional/bindings.cc: *** empty log message ***
2003-05-23 06:08 tan2
* module/Regional/outputs.cc, module/Regional/outputs.h: add
bindings to class OutputVisc
2003-05-23 05:41 ces74
* module/Regional/outputs.cc: bug fixed: include outputs.h, not
output_binding.h
2003-05-23 05:39 ces74
* module/Regional/advdiffu.cc: bug fixed: PG_timestep_Init to
..._init PG_timestep_Fini to ..._fini
2003-05-23 05:37 ces74
* lib/Common/advection_diffusion.h, lib/Regional/Output.c: Bugs
fixed.
2003-05-23 05:27 ces74
* pyre/Components/Advection_diffusion/Advection_diffusion.py:
Changed class name from Advection_diffusion to PG_timestep
2003-05-23 01:32 ces74
* module/Regional/Make.mm, module/Regional/advdiffu.cc,
module/Regional/advdiffu.h, module/Regional/bindings.cc,
module/Regional/misc.cc, module/Regional/misc.h: Inconsistency
caused by adding advdiffu modules has been fixed.
2003-05-23 01:21 tan2
* lib/Regional/Output.c, module/Regional/Make.mm,
module/Regional/bindings.cc: 1. change filename from
'output_bindings.*' to 'outputs.*' 2. delete
OutputCoord.writeheader() method 3. fix a typo in Output.py
2003-05-23 01:20 ces74
* pyre/CitcomSRegional.py, pyre/Components/Advection_diffusion,
pyre/Components/Advection_diffusion/Advection_diffusion.py,
pyre/Components/Advection_diffusion/Make.mm,
pyre/Components/Advection_diffusion/__init__.py,
pyre/RegionalApp.py, pyre/Solver/RegionalSolver.py: A new
package Advection_diffusion created. This package includes a new
class, PG_timestep.
2003-05-23 01:17 ces74
* lib/Common/Advection_diffusion.c, lib/Common/Make.mm,
lib/Common/advection_diffusion.h: Functions added and modified
for PG_timestep class
2003-05-22 04:28 tan2
* lib/Common/output.h, lib/Regional/Output.c,
lib/Regional/output.h, module/Regional/Make.mm,
module/Regional/bindings.cc, module/Regional/misc.cc,
module/Regional/misc.h, module/Regional/outputs.cc,
module/Regional/outputs.h, pyre/CitcomSRegional.py,
pyre/RegionalApp.py, pyre/Solver/RegionalSolver.py: 1. add class
CitcomOutput 2. add classes OutputCoord and OutputVelo, which
write out coordinate and velocity output 3. add some functions
in lib/Regional/Output.c for bindings 4. add python bindings to
all above
2003-05-21 01:56 tan2
* pyre/Components/Stokes_solver/Imcompressible.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Stokes_solver.py: 1. change
implementation of Stokes_solver 2. change
ImcompressibleNewtonian and ImcompressibleNonNewtonian
accordingly
2003-05-21 01:55 tan2
* lib/Common/Drive_solvers.c: initialize
'monitor.elapsed_time_vsoln'
2003-05-17 04:11 tan2
* lib/Common/Drive_solvers.c, lib/Common/drive_solvers.h,
module/Regional/bindings.cc, module/Regional/misc.cc,
module/Regional/misc.h, pyre/CitcomSRegional.py,
pyre/Components/Stokes_solver/Imcompressible.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Make.mm,
pyre/Components/Stokes_solver/Stokes_solver.py,
pyre/Components/Stokes_solver/__init__.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py, tests/citcomsregional.py,
tests/signon.py: 1. add python class Stokes_solver 2. add python
classes ImcompressibleNewtonian and ImcompressibleNonNewtonian,
derived from Stokes_solver 3. add python binding to methods of
ImcompressibleNewtonian 4. modify tests accordingly
2003-05-15 07:07 tan2
* pyre/Components, pyre/Components/Stokes_solver,
pyre/Components/Stokes_solver/Imcompressible.py,
pyre/Components/Stokes_solver/Incompressible.py,
pyre/Components/Stokes_solver/Make.mm,
pyre/Components/Stokes_solver/Stokes_solver.py,
pyre/Components/Stokes_solver/__init__.py: Initial revision
2003-05-15 01:31 tan2
* lib/Common/Instructions.c, lib/Common/Viscosity_structures.c,
lib/Regional/Version_dependent.c, module/Regional/misc.cc,
tests/signon.py: seperate viscosity input and computation into
different functions
2003-05-14 02:51 tan2
* drivers/Citcom.c, lib/Common/Citcom_init.c,
lib/Common/Global_operations.c, lib/Common/citcom_init.h,
lib/Common/global_defs.h, lib/Common/parallel_related.h,
lib/Regional/Global_operations.c,
lib/Regional/Parallel_related.c, lib/Regional/global_defs.h,
lib/Regional/parallel_related.h, module/Regional/misc.cc,
tests/signon.py: 1. creat a new global variable
E->parallel.world 2. replace all MPI_COMM_WORLD by
E->parallel.world
2003-04-30 03:14 tan2
* lib/Common/phase_change.h: add function prototypes
2003-04-30 03:13 tan2
* lib/Regional/Version_dependent.c: fix bugs when input
'control.coor_file', 'control.reset_startage', and
'control.zero_elapsed_time'
2003-04-29 01:55 tan2
* lib/Common/Instructions.c,
lib/Common/Pan_problem_misc_functions.c,
lib/Common/Phase_change.c, lib/Regional/Version_dependent.c: 1.
move everything about phase change to 'Phase_change.c' 2.
restructure phase change functions
2003-04-26 07:59 tan2
* lib/Common/Problem_related.c, lib/Common/global_defs.h,
lib/Regional/Boundary_conditions.c,
lib/Regional/Problem_related.c,
lib/Regional/Version_dependent.c, lib/Regional/global_defs.h: 1.
change 'control.mantle_temp' to 'control.lith_age_mantle_temp'
2. move functions deal with 'lith_age' to a 'Lith_age.c'
(complete)
2003-04-26 07:36 tan2
* lib/Common/Element_calculations.c,
lib/Common/Sphere_harmonics.c: bug fix in original code
2003-04-26 05:58 tan2
* drivers/Make.mm, lib/Make.mm, module/Make.mm, pyre/Make.mm:
diable build on 'Full' version
2003-04-26 05:29 tan2
* lib/Common/Initial_temperature.c, lib/Common/global_defs.h,
lib/Common/initial_temperature.h, lib/Common/lith_age.h,
lib/Common/parsing.h, lib/Regional/Initial_temperature.c,
lib/Regional/Lith_age.c, lib/Regional/Make.mm,
lib/Regional/global_defs.h, lib/Regional/initial_temperature.h,
lib/Regional/lith_age.h: 1. add parsing.h 2. modularize
convection_initial_temperature() 3. move functions deal with
'lith_age' to a 'Lith_age.c' (not finished)
2003-04-26 05:12 tan2
* drivers/Citcom.c, lib/Common/Citcom_init.c: 1. more
initialization done in Citcom_Init() 2. fix bug from previous
commit in main()
2003-04-25 02:07 tan2
* lib/Common/Element_calculations.c,
lib/Common/General_matrix_functions.c: bug fix
2003-04-11 08:31 tan2
* lib/Common/Citcom_init.c, module/Regional/misc.cc: clean up
debug message
2003-04-11 08:27 ces74
* pyre/CitcomSRegional.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: class name changed to RegionalApp
2003-04-11 06:40 tan2
* tests/citcomsregional.py, tests/signon.py: change module name
from CitcomSRegional to Regional
2003-04-11 06:34 tan2
* pyre/CitcomSRegional.py, pyre/RegionalApp.py,
pyre/Solver/RegionalSolver.py: 1. add preInit() and postInit()
2. change EarthModelGrid to SimulationGrid
2003-04-11 06:25 tan2
* module/Full/Fullmodule.cc, module/Full/Make.mm,
module/Full/bindings.cc, module/Full/bindings.h,
module/Full/exceptions.cc, module/Full/exceptions.h,
module/Full/misc.cc, module/Full/misc.h: change module name from
CitcomSFull to Full
2003-04-11 06:18 tan2
* module/Regional/Make.mm, module/Regional/Regionalmodule.cc,
module/Regional/bindings.cc, module/Regional/bindings.h,
module/Regional/exceptions.cc, module/Regional/exceptions.h,
module/Regional/misc.cc, module/Regional/misc.h: change module
name from CitcomSRegional to Regional
2003-04-11 03:15 tan2
* tests/signon.py: test for new Citcom_Init(), which takes 2
arguments now.
2003-04-11 02:07 tan2
* drivers/Citcom.c, lib/Common/Citcom_init.c,
lib/Common/citcom_init.h, module/Regional/misc.cc: 1. Pass rank
and size to Citcom_Init(). 2. Disable
parallel_process_initilization(). Its functionality is performed
by Citcom_Init().
2003-04-10 01:59 ces74
* pyre/CitcomSRegional.py, pyre/RegionalApp.py, pyre/Solver,
pyre/Solver/RegionalSolver.py: Modified to reflect changes in
moduels in pyre/Common
2003-04-06 07:51 tan2
* drivers/Citcom.c, lib/Common/Citcom_init.c,
lib/Common/Instructions.c, lib/Common/Parsing.c,
module/Regional/bindings.cc, module/Regional/misc.cc,
module/Regional/misc.h, tests/signon.py: 1. pass input filename,
rather than argc and argv, to read_instructions() 2. pass input
filename, rather than argc and argv, to setup_parser() 3. more
initialization done in Citcom_Init() 4. add python binding to
read_instructions()
2003-04-06 04:57 tan2
* drivers/Citcom.c, lib/Common/Citcom_init.c,
lib/Common/citcom_init.h, module/Regional/misc.cc: binding of
Citcom_Init(), finished
2003-04-06 04:25 tan2
* drivers/Full/Make.mm, drivers/Make.mm, drivers/Regional/Make.mm,
examples/Full/Make.mm, examples/Make.mm,
examples/Regional/Make.mm, lib/Common/Make.mm, lib/Full/Make.mm,
lib/Make.mm, lib/Regional/Make.mm, module/Full/Make.mm,
module/Make.mm, module/Regional/Make.mm, pyre/Make.mm,
tests/Make.mm: PROJ_TMPDIR is specified by PACKAGE too
2003-04-04 08:42 tan2
* module/Regional/Make.mm, module/Regional/bindings.cc,
module/Regional/misc.cc, module/Regional/misc.h,
tests/signon.py: trial on binding of Citcom_Init(), not finished.
2003-04-04 08:41 tan2
* lib/Full/Make.mm, lib/Regional/Make.mm: export header files
2003-04-04 08:40 tan2
* drivers/Citcom.c: 1. declare "struct All_variables *E" as global
in read_instruction() 2. allocate *E in Citcom_Init()
2003-04-04 08:39 tan2
* lib/Common/Citcom.c: redundant file
2003-04-04 08:37 tan2
* lib/Common/Citcom_init.c, lib/Common/Instructions.c,
lib/Common/Make.mm, lib/Common/citcom_init.h: 1. declare "struct
All_variables *E" as global in read_instruction() 2. allocate *E
in Citcom_Init()
2003-04-04 03:40 tan2
* lib/Make.mm, module/Make.mm, pyre/RadiusDepth.py: cosmetics
2003-04-04 03:38 tan2
* drivers/Full/Make.mm, drivers/Make.mm, drivers/Regional/Make.mm:
fix bugs caused by symlink to Citcom.c
2003-03-26 08:49 ces74
* tests/citcomsregional.py: for testing EarthModel properties
2003-03-25 05:48 tan2
* pyre/RadiusDepth.py: 1. change attribute 'R0' to 'outer_radius'
2. outer_radius, inRadius, and inDepth are read-only now 3. add
self-test section
2003-03-25 03:48 tan2
* pyre/RadiusDepth.py: Add RadiusDepth.py, which defines two
classed converting depth to radius, and vise versa.
2003-03-25 01:38 tan2
* drivers/Make.mm, module/Make.mm, pyre/Make.mm: add
BLD_ACTION="all"
2003-03-24 09:46 tan2
* Make.mm, drivers, drivers/Citcom.c, drivers/Full,
drivers/Full/Make.mm, drivers/Full/local.def, drivers/Make.mm,
drivers/Regional, drivers/Regional/Make.mm,
drivers/Regional/local.def, drivers/local.def, examples,
examples/.reset-temporary, examples/Full, examples/Full/Make.mm,
examples/Full/input.sample, examples/Full/local.def,
examples/Full/machine.sample, examples/Make.mm,
examples/Regional, examples/Regional/Make.mm,
examples/Regional/input.sample, examples/Regional/local.def,
examples/Regional/machines.sample, examples/local.def, lib,
lib/Common, lib/Common/Advection_diffusion.c,
lib/Common/Citcom.c, lib/Common/Construct_arrays.c,
lib/Common/Convection.c, lib/Common/Drive_solvers.c,
lib/Common/Element_calculations.c,
lib/Common/General_matrix_functions.c,
lib/Common/Global_operations.c,
lib/Common/Initial_temperature.c, lib/Common/Instructions.c,
lib/Common/Make.mm, lib/Common/Nodal_mesh.c,
lib/Common/Output.c, lib/Common/Pan_problem_misc_functions.c,
lib/Common/Parsing.c, lib/Common/Phase_change.c,
lib/Common/Problem_related.c, lib/Common/Process_buoyancy.c,
lib/Common/Process_velocity.c, lib/Common/Shape_functions.c,
lib/Common/Size_does_matter.c, lib/Common/Solver_conj_grad.c,
lib/Common/Solver_multigrid.c, lib/Common/Sphere_harmonics.c,
lib/Common/Stokes_flow_Incomp.c, lib/Common/Topo_gravity.c,
lib/Common/Tracer_advection.c,
lib/Common/Viscosity_structures.c, lib/Common/advection.h,
lib/Common/convection_variables.h,
lib/Common/element_definitions.h, lib/Common/global_defs.h,
lib/Common/local.def, lib/Common/sphere_communication.h,
lib/Common/temperature_descriptions.h, lib/Common/tracer_defs.h,
lib/Common/viscosity_descriptions.h, lib/Full,
lib/Full/Boundary_conditions.c, lib/Full/Geometry_cartesian.c,
lib/Full/Global_operations.c, lib/Full/Initial_temperature.c,
lib/Full/Make.mm, lib/Full/Output.c,
lib/Full/Parallel_related.c, lib/Full/Problem_related.c,
lib/Full/Process_buoyancy.c, lib/Full/Sphere_related.c,
lib/Full/Version_dependent.c, lib/Full/global_defs.h,
lib/Full/local.def, lib/Make.mm, lib/Regional,
lib/Regional/Boundary_conditions.c,
lib/Regional/Geometry_cartesian.c,
lib/Regional/Global_operations.c,
lib/Regional/Initial_temperature.c, lib/Regional/Make.mm,
lib/Regional/Output.c, lib/Regional/Parallel_related.c,
lib/Regional/Problem_related.c, lib/Regional/Process_buoyancy.c,
lib/Regional/Sphere_related.c, lib/Regional/Version_dependent.c,
lib/Regional/global_defs.h, lib/Regional/local.def,
lib/local.def, local.def, module, module/Full,
module/Full/Fullmodule.cc, module/Full/Make.mm,
module/Full/bindings.cc, module/Full/bindings.h,
module/Full/exceptions.cc, module/Full/exceptions.h,
module/Full/local.def, module/Full/misc.cc, module/Full/misc.h,
module/Make.mm, module/Regional, module/Regional/Make.mm,
module/Regional/Regionalmodule.cc, module/Regional/bindings.cc,
module/Regional/bindings.h, module/Regional/exceptions.cc,
module/Regional/exceptions.h, module/Regional/local.def,
module/Regional/misc.cc, module/Regional/misc.h,
module/local.def, pyre, pyre/Make.mm, pyre/__init__.py,
pyre/local.def, tests, tests/Make.mm, tests/local.def,
tests/signon.py: Initial revision
2005-08-23 02:43 boo
* .: [vcp] select <> as trunk
2005-08-23 02:42 VCP
* mc/3D/CitcomS/branches, .: VCP: initializing layout
Computing file changes ...
