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https://github.com/bcgsc/ntCard
13 September 2022, 05:32:57 UTC
Revision 36b91df1d69a1b768ab532da51e37c75045443a2 authored by Johnathan Wong on 15 January 2020, 23:20:09 UTC, committed by Johnathan Wong on 15 January 2020, 23:20:09 UTC 
add integration test
1 parent 0863ce9
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Tip revision: 36b91df1d69a1b768ab532da51e37c75045443a2 authored by Johnathan Wong on 15 January 2020, 23:20:09 UTC
add integration test
Tip revision: 36b91df
Makefile.am 
bin_PROGRAMS = ntcard nthll

ntcard_CPPFLAGS = -I$(top_srcdir)/Common

ntcard_SOURCES = \
        Common/Uncompress.cpp \
        Common/Uncompress.h \
        Common/SignalHandler.cpp \
        Common/SignalHandler.h \
        Common/StringUtil.h \
        Common/Fcontrol.cpp \
        Common/Fcontrol.h \
        Common/nthash.hpp \
        Common/ntHashIterator.hpp \
        ntcard.cpp

nthll_CPPFLAGS = -I$(top_srcdir)/Common

nthll_SOURCES = \
        Common/Uncompress.cpp \
        Common/Uncompress.h \
        Common/SignalHandler.cpp \
        Common/SignalHandler.h \
        Common/Fcontrol.cpp \
        Common/Fcontrol.h \
        Common/nthash.hpp \
        Common/ntHashIterator.hpp \
        nthll.cpp

dist_doc_DATA = \
	ChangeLog \
	CITATION.bib \
	LICENSE \
	README.md

EXTRA_DIST=autogen.sh

test-data.tar.gz:
	wget https://www.bcgsc.ca/sites/default/files/bioinformatics/software/abyss/releases/1.3.4/test-data.tar.gz

test_k12.hist: test-data.tar.gz
	./ntcard -k 12 -p test test-data.tar.gz

check: test_k12.hist
	diff -q test_k12.hist data/test_k12.hist.good
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