https://github.com/ctlab/phantasus
Revision 495ad23902412a1daae6ad01a8b5a4cecd93a24c authored by Vladislav Kamenev on 19 June 2019, 12:56:44 UTC, committed by Vladislav Kamenev on 20 June 2019, 12:27:23 UTC
1 parent 8499e74
Tip revision: 495ad23902412a1daae6ad01a8b5a4cecd93a24c authored by Vladislav Kamenev on 19 June 2019, 12:56:44 UTC
Fix Docker build
Fix Docker build
Tip revision: 495ad23
collapseDataset.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/collapseDataset.R
\name{collapseDataset}
\alias{collapseDataset}
\title{Collapse dataset}
\usage{
collapseDataset(es, isRows = TRUE, selectOne = FALSE, fn, fields,
removeEmpty = TRUE)
}
\arguments{
\item{es}{Expression set}
\item{isRows}{Work with rows. False if columns (default True - row mode)}
\item{selectOne}{select best match or merge duplicates}
\item{fn}{select/merge function}
\item{fields}{fields to unique on}
\item{removeEmpty}{remove unannotated genes}
}
\value{
Nothing. Collapsed dataset will be assigned to es in environment
}
\description{
\code{collapseDataset} performs a collapse action on expression set
}
\examples{
\dontrun{
es <- getGSE('GSE53986')[[1]]
collapseDataset(es, isRows = TRUE, selectOne = TRUE,
fn = mean, fields = c('Gene ID', 'Gene symbol'))
}
}
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