https://github.com/splatlab/squeakr
Revision 4c60869fbe9f18857c6095fd9bcdaabeab6268ee authored by Prashant Pandey on 02 May 2017, 13:07:05 UTC, committed by GitHub on 02 May 2017, 13:07:05 UTC
Also, added a note that Squeakr currently only supports fastq file formats.
1 parent 849dbe1
Tip revision: 4c60869fbe9f18857c6095fd9bcdaabeab6268ee authored by Prashant Pandey on 02 May 2017, 13:07:05 UTC
Adding library dependencies in the README.
Adding library dependencies in the README.
Tip revision: 4c60869
chunk.h
/*
* =====================================================================================
*
* Filename: chunk.h
*
* Description:
*
* Version: 1.0
* Created: 04/18/2016 04:49:32 PM
* Revision: none
* Compiler: gcc
*
* Author: Prashant Pandey (ppandey@cs.stonybrook.edu)
* Rob Patro (rob.patro@cs.stonybrook.edu)
* Rob Johnson (rob@cs.stonybrook.edu)
* Organization: Stony Brook University
*
* =====================================================================================
*/
#ifndef _CHUNK_H_
#define _CHUNK_H_
#include <stdio.h>
namespace kmercounting {
class chunk {
public:
chunk();
chunk(char *reads, uint32_t size);
inline char *get_reads();
inline uint32_t get_size();
private:
char *_reads;
uint32_t _size;
};
chunk::chunk()
{
_reads = NULL;
_size = 0;
}
chunk::chunk(char *reads, uint32_t size)
{
_reads = reads;
_size = size;
}
inline char *chunk::get_reads()
{
return _reads;
}
inline uint32_t chunk::get_size()
{
return _size;
}
}
#endif
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