https://github.com/connor-lab/ncov2019-artic-nf
Revision 540a88d06a6a16c36ea9d1acfeeac5f93d44f815 authored by Matt Bull on 19 March 2020, 15:08:47 UTC, committed by Matt Bull on 19 March 2020, 15:08:47 UTC
1 parent 71356d4
Tip revision: 540a88d06a6a16c36ea9d1acfeeac5f93d44f815 authored by Matt Bull on 19 March 2020, 15:08:47 UTC
Merge illumina work from @tonbar
Merge illumina work from @tonbar
Tip revision: 540a88d
Dockerfile
FROM continuumio/miniconda3:latest
LABEL authors="Matt Bull" \
description="Docker image containing all requirements for the ARTIC project's ncov2019 pipeline"
COPY environment.yml /
RUN apt-get update && apt-get install -y g++ git make procps && apt-get clean -y
RUN git clone https://github.com/artic-network/artic-ncov2019 /artic-ncov2019
RUN /opt/conda/bin/conda env create -f /environment.yml && /opt/conda/bin/conda clean -a
ENV PATH /opt/conda/envs/artic-ncov2019/bin:$PATH
ENTRYPOINT ["/opt/conda/envs/artic-ncov2019/bin/artic"]
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