https://github.com/GPflow/GPflow
Revision 57d8ab787dbb1b7b555279d38641d8b4db5dda0e authored by st-- on 26 February 2020, 14:09:18 UTC, committed by GitHub on 26 February 2020, 14:09:18 UTC
Historically, there was just a single flat directory full of test modules. This had several negative implications: a) some test files ended up very long, b) it was occasionally hard to find a good place for new tests, c) no separation between unit and integration tests.

This PR gives the tests a directory structure that mirrors that of the gpflow package. Where possible, the code in gpflow/submodule/file.py is tested in tests/gpflow/submodule/test_file.py. Integration tests (e.g. notebooks, method equivalence) are now in tests/integration/.

Most of this PR is simple file moves, plus some splitting up of tests (particularly for models) according to the new structure. The reference kernel implementations are now unified in tests/gpflow/kernels/reference.py.
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Tip revision: 57d8ab787dbb1b7b555279d38641d8b4db5dda0e authored by st-- on 26 February 2020, 14:09:18 UTC
improve organization of test modules (#1288)
Tip revision: 57d8ab7
GLOSSARY.md
## Glossary

GPflow does not always follow standard Python naming conventions,
and instead tries to apply the notation in the relevant GP papers.\
The following is the convention we aim to use in the code.

---

<dl>
  <dt>GPR</dt>
  <dd>Gaussian process regression</dd>

  <dt>SVGP</dt>
  <dd>stochastic variational inference for Gaussian process models</dd>

  <dt>Shape constructions [..., A, B]</dt>
  <dd>the way of describing tensor shapes in docstrings and comments. Example: <i>[..., N, D, D]</i>, this is a tensor with an arbitrary number of leading dimensions indicated using the ellipsis sign, and the last two dimensions are equal</dd>

  <dt>X</dt>
  <dd>(and variations like Xnew) refers to input points; always of rank 2, e.g. shape <i>[N, D]</i>, even when <i>D=1</i></dd>

  <dt>Y</dt>
  <dd>(and variations like Ynew) refers to observed output values, potentially with multiple output dimensions; always of rank 2, e.g. shape <i>[N, P]</i>, even when <i>P=1</i></dd>

  <dt>Z</dt>
  <dd>refers to inducing points</dd>

  <dt>M</dt>
  <dd>stands for the number of inducing features (e.g. length of Z)</dd>

  <dt>N</dt>
  <dd>stands for the number of data or minibatch size in docstrings and shape constructions</dd>

  <dt>P</dt>
  <dd>stands for the number of output dimensions in docstrings and shape constructions</dd>

  <dt>D</dt>
  <dd>stands for the number of input dimensions in docstrings and shape constructions</dd>
</dl>
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