https://github.com/splatlab/squeakr
Revision 63d06dea8cdcd31bfcc3d9178284829ce1589a78 authored by Prashant Pandey on 25 January 2018, 18:51:34 UTC, committed by Prashant Pandey on 25 January 2018, 18:51:34 UTC
1 parent 6741efd
Tip revision: 63d06dea8cdcd31bfcc3d9178284829ce1589a78 authored by Prashant Pandey on 25 January 2018, 18:51:34 UTC
Adding the script to estmiate the size of the CQF using the output from ntCard.
Adding the script to estmiate the size of the CQF using the output from ntCard.
Tip revision: 63d06de
Makefile
TARGETS= squeakr-count squeakr-query squeakr-inner-prod
ifdef D
DEBUG=-g
OPT=
else
DEBUG=
OPT=-Ofast
endif
ifdef NH
ARCH=
else
ARCH=-msse4.2 -D__SSE4_2_
endif
ifdef P
PROFILE=-pg -no-pie # for bug in gprof.
endif
CXX = g++ -std=c++11
CC = g++ -std=c++11
LD= g++ -std=c++11
CXXFLAGS += -Wall $(DEBUG) $(PROFILE) $(OPT) $(ARCH) -m64 -I. -Wno-unused-result -Wno-strict-aliasing -Wno-unused-function -Wno-sign-compare
LDFLAGS += $(DEBUG) $(PROFILE) $(OPT) -lpthread -lboost_system -lboost_thread -lm -lbz2 -lz
#
# declaration of dependencies
#
all: $(TARGETS)
# dependencies between programs and .o files
squeakr-count: main.o hashutil.o threadsafe-gqf/gqf.o
squeakr-query: kmer_query.o hashutil.o threadsafe-gqf/gqf.o
squeakr-inner-prod: kmer_inner_prod.o hashutil.o threadsafe-gqf/gqf.o
# dependencies between .o files and .h files
main.o: threadsafe-gqf/gqf.h hashutil.h chunk.h kmer.h reader.h
kmer_query.o: threadsafe-gqf/gqf.h hashutil.h chunk.h kmer.h
kmer_inner_prod.o: threadsafe-gqf/gqf.h hashutil.h
hashutil.o: hashutil.h
# dependencies between .o files and .cc (or .c) files
%.o: %.cc
threadsafe-gqf/gqf.o: threadsafe-gqf/gqf.c threadsafe-gqf/gqf.h
#
# generic build rules
#
$(TARGETS):
$(LD) $^ $(LDFLAGS) -o $@
%.o: %.cc
$(CXX) $(CXXFLAGS) $(INCLUDE) $< -c -o $@
%.o: %.c
$(CC) $(CXXFLAGS) $(INCLUDE) $< -c -o $@
clean:
rm -f *.o threadsafe-gqf/gqf.o $(TARGETS)
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