https://github.com/splatlab/squeakr
Revision 63d06dea8cdcd31bfcc3d9178284829ce1589a78 authored by Prashant Pandey on 25 January 2018, 18:51:34 UTC, committed by Prashant Pandey on 25 January 2018, 18:51:34 UTC
1 parent 6741efd
Tip revision: 63d06dea8cdcd31bfcc3d9178284829ce1589a78 authored by Prashant Pandey on 25 January 2018, 18:51:34 UTC
Adding the script to estmiate the size of the CQF using the output from ntCard.
Adding the script to estmiate the size of the CQF using the output from ntCard.
Tip revision: 63d06de
chunk.h
/*
* =====================================================================================
*
* Filename: chunk.h
*
* Description:
*
* Version: 1.0
* Created: 04/18/2016 04:49:32 PM
* Revision: none
* Compiler: gcc
*
* Author: Prashant Pandey (ppandey@cs.stonybrook.edu)
* Rob Patro (rob.patro@cs.stonybrook.edu)
* Rob Johnson (rob@cs.stonybrook.edu)
* Organization: Stony Brook University
*
* =====================================================================================
*/
#ifndef _CHUNK_H_
#define _CHUNK_H_
#include <stdio.h>
namespace kmercounting {
class chunk {
public:
chunk();
chunk(char *reads, uint32_t size);
inline char *get_reads();
inline uint32_t get_size();
private:
char *_reads;
uint32_t _size;
};
chunk::chunk()
{
_reads = NULL;
_size = 0;
}
chunk::chunk(char *reads, uint32_t size)
{
_reads = reads;
_size = size;
}
inline char *chunk::get_reads()
{
return _reads;
}
inline uint32_t chunk::get_size()
{
return _size;
}
}
#endif
Computing file changes ...