Revision 66357a4654bfe45c5fe4a9565bdf67d7b5a6f05c authored by clevermx on 18 January 2022, 11:09:39 UTC, committed by Space on 18 January 2022, 11:09:39 UTC
Add meta-files generation for new counts processing. Add support for 8+ versions of ARCHs4. Co-authored-by: Alexey Sergushichev <alserg@itmo.ru> Merge-request: PHANTASUS-MR-21 Merged-by: Maksim Kleverov <klevermx@gmail.com>
1 parent d230978
getGSE.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{getGSE}
\alias{getGSE}
\title{Load ExpressionSet from GEO Series}
\usage{
getGSE(name, destdir = tempdir(), mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
}
\arguments{
\item{name}{String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.}
\item{destdir}{Directory for caching loaded Series and GPL
files from GEO database.}
\item{mirrorPath}{URL string which specifies the source of matrices.}
}
\value{
List of ExpressionSet objects, that were available by given
in \code{name} variable GEO identifier.
}
\description{
\code{getGSE} return the ExpressionSet object(s) corresponding
to GEO Series Identifier.
}
\examples{
\dontrun{
getGSE('GSE14308', destdir = 'cache')
getGSE('GSE27112')
}
getGSE('GSE53986')
}
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