Revision 66357a4654bfe45c5fe4a9565bdf67d7b5a6f05c authored by clevermx on 18 January 2022, 11:09:39 UTC, committed by Space on 18 January 2022, 11:09:39 UTC
Add meta-files generation for new counts processing.
Add support for 8+ versions of ARCHs4.

Co-authored-by: Alexey Sergushichev <alserg@itmo.ru>
Merge-request: PHANTASUS-MR-21
Merged-by: Maksim Kleverov <klevermx@gmail.com>
1 parent d230978
History
File Mode Size
adjustDataset.Rd -rw-r--r-- 1.2 KB
annotationDBMeta.Rd -rw-r--r-- 500 bytes
calcPCA.Rd -rw-r--r-- 573 bytes
calculatedAnnotation.Rd -rw-r--r-- 828 bytes
checkGPLsFallback.Rd -rw-r--r-- 606 bytes
colMeansByGroups.Rd -rw-r--r-- 424 bytes
collapseDataset.Rd -rw-r--r-- 883 bytes
convertByAnnotationDB.Rd -rw-r--r-- 891 bytes
createES.Rd -rw-r--r-- 964 bytes
es.Rd -rw-r--r-- 402 bytes
fgseaExample.Rd -rw-r--r-- 262 bytes
generatePreloadedSession.Rd -rw-r--r-- 1.4 KB
getArchs4Files.Rd -rw-r--r-- 386 bytes
getES.Rd -rw-r--r-- 1.1 KB
getGDS.Rd -rw-r--r-- 874 bytes
getGSE.Rd -rw-r--r-- 946 bytes
gseaPlot.Rd -rw-r--r-- 1.1 KB
limmaAnalysis.Rd -rw-r--r-- 729 bytes
loadCounts.Rd -rw-r--r-- 858 bytes
loadFromARCHS4.Rd -rw-r--r-- 748 bytes
loadGEO.Rd -rw-r--r-- 982 bytes
loadPreloaded.Rd -rw-r--r-- 627 bytes
performKmeans.Rd -rw-r--r-- 641 bytes
queryAnnotationDBMeta.Rd -rw-r--r-- 446 bytes
read.gct.Rd -rw-r--r-- 453 bytes
reparseCachedESs.Rd -rw-r--r-- 788 bytes
reproduceInR.Rd -rw-r--r-- 647 bytes
servePhantasus.Rd -rw-r--r-- 1.0 KB
shinyGAMAnalysis.Rd -rw-r--r-- 438 bytes
subsetES.Rd -rw-r--r-- 579 bytes
write.gct.Rd -rw-r--r-- 676 bytes

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