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https://github.com/stamatak/standard-RAxML
06 April 2024, 12:36:31 UTC
Revision 6d56ab5102a345e21f5afed3ad96adb4cb2b44a8 authored by stamatak on 13 December 2013, 13:48:40 UTC, committed by stamatak on 13 December 2013, 13:48:40 UTC 
-put eigenvalue/eigenvector decomposition into separate file that is compiled without any
 
 compiler optimizations such as to avoid recurrent (potential) trouble with the Intel icc compiler
 that over-optimized these functions and yielded them numerically instable
-add fix by the UF HPC center for better pthreads scheduling in the hybrid MPI/Pthreads version
1 parent 0227ddf
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Tip revision: 6d56ab5102a345e21f5afed3ad96adb4cb2b44a8 authored by stamatak on 13 December 2013, 13:48:40 UTC
-put eigenvalue/eigenvector decomposition into separate file that is compiled without any
Tip revision: 6d56ab5
Makefile.SSE3.HYBRID.gcc 
# Makefile November 2009 by Alexandros Stamatakis

CC = mpicc 

CFLAGS = -D_WAYNE_MPI -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops  

LIBRARIES = -lm -pthread 

RM = rm -f

objs    = axml.o  optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o   classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o  mem_alloc.o eigen.o  

all : raxmlHPC-HYBRID-SSE3

GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h #mem_alloc.h compiler.h  gcc.h  ll_asm.h  ll_list.h

raxmlHPC-HYBRID-SSE3 : $(objs)
	$(CC) -o raxmlHPC-HYBRID-SSE3 $(objs) $(LIBRARIES) 

rmqs.o : rmqs.c $(GLOBAL_DEPS)
classify.o : classify.c $(GLOBAL_DEPS)
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)
optimizeModel.o : optimizeModel.c $(GLOBAL_DEPS)
multiple.o : multiple.c $(GLOBAL_DEPS)
axml.o : axml.c $(GLOBAL_DEPS)
searchAlgo.o : searchAlgo.c $(GLOBAL_DEPS)
topologies.o : topologies.c $(GLOBAL_DEPS)
parsePartitions.o : parsePartitions.c $(GLOBAL_DEPS)
treeIO.o : treeIO.c $(GLOBAL_DEPS)
models.o : models.c $(GLOBAL_DEPS)
rapidBootstrap.o : rapidBootstrap.c $(GLOBAL_DEPS) 
evaluatePartialGenericSpecial.o : evaluatePartialGenericSpecial.c $(GLOBAL_DEPS)
evaluateGenericSpecial.o : evaluateGenericSpecial.c $(GLOBAL_DEPS)
newviewGenericSpecial.o : newviewGenericSpecial.c $(GLOBAL_DEPS)
makenewzGenericSpecial.o : makenewzGenericSpecial.c $(GLOBAL_DEPS)
fastDNAparsimony.o : fastDNAparsimony.c  $(GLOBAL_DEPS)
fastSearch.o : fastSearch.c $(GLOBAL_DEPS)
leaveDropping.o : leaveDropping.c $(GLOBAL_DEPS)
rogueEPA.o : rogueEPA.c $(GLOBAL_DEPS)
ancestralStates.o : ancestralStates.c $(GLOBAL_DEPS)
 mem_alloc.o eigen.o  : mem_alloc.c  $(GLOBAL_DEPS)

eigen.o : eigen.c $(GLOBAL_DEPS)
	$(CC) -c -o eigen.o eigen.c 
clean : 
	$(RM) *.o raxmlHPC-HYBRID-SSE3
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