https://github.com/AllenInstitute/patchseqtools
Revision 755751e1827968e7b60d530d6e0d06495019e1cd authored by jeremymiller on 31 August 2018, 23:39:31 UTC, committed by jeremymiller on 31 August 2018, 23:39:31 UTC
1 parent e36bc90
Tip revision: 755751e1827968e7b60d530d6e0d06495019e1cd authored by jeremymiller on 31 August 2018, 23:39:31 UTC
Several new functions
Several new functions
Tip revision: 755751e
DESCRIPTION
Package: patchseqtools
Type: Package
Title: QC and Cell Type Mapping for Patch-Seq data
Version: 0.0.1
Author: Jeremy Miller <jeremym@alleninstitute.org>
Maintainer: Jeremy Miller <jeremym@alleninstitute.org>
Description: This repository includes code for QC mapping and cell type assignments. Specific topics include:
1) Assigning quality scores to each cell (mostly wrapper functions for https://github.com/PavlidisLab/patchSeqQC)
2) Cell type mapping using tree mapping strategy (to be added later)
3) Cell type clustering using CCA (mostly wrapper functions for https://satijalab.org/seurat/Seurat_AlignmentTutorial.html)
License: What license is it under?
Encoding: UTF-8
LazyData: true
Imports:
dendextend (>= 1.7.0),
gplots (>= 3.0.1),
pdist (>= 1.2),
matrixStats (>= 0.53.1),
Rtsne (>= 0.13),
ggplot2 (>= 2.2.1)
RoxygenNote: 6.0.1
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