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https://github.com/AllenInstitute/patchseqtools
31 August 2021, 09:28:04 UTC
Revision 755751e1827968e7b60d530d6e0d06495019e1cd authored by jeremymiller on 31 August 2018, 23:39:31 UTC, committed by jeremymiller on 31 August 2018, 23:39:31 UTC 
Several new functions
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Tip revision: 755751e1827968e7b60d530d6e0d06495019e1cd authored by jeremymiller on 31 August 2018, 23:39:31 UTC
Several new functions
Tip revision: 755751e
README.md 
# patchseqtools
  
R functions for gene selection and analysis of patch-seq data.  
  
patchseqtools includes many functions that are used for QC and cell typing of patch-seq cells.  

Specific topics include:  
    1) Assigning quality scores to each cell (mostly wrapper functions for https://github.com/PavlidisLab/patchSeqQC)  
    2) Cell type mapping using tree mapping strategy (to be added later)  
    3) Cell type clustering using CCA (mostly wrapper functions for https://satijalab.org/seurat/Seurat_AlignmentTutorial.html)  
License: What license is it under?

Install using:
```
devtools::install_github("AllenInstitute/patchseqtools",auth_token="802976690281f1483c40de46d0a07e9d01a3de08")
```
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