https://github.com/ctlab/phantasus
Revision 80dee837b3b1b6f988943903382e7c867b9e3061 authored by clevermx on 14 June 2022, 15:04:25 UTC, committed by Space on 14 June 2022, 15:04:25 UTC
keep stat column and add explicit shrink type

1 parent 1708586
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Tip revision: 80dee837b3b1b6f988943903382e7c867b9e3061 authored by clevermx on 14 June 2022, 15:04:25 UTC
fix usage of lfcshrink
Tip revision: 80dee83
NAMESPACE
# Generated by roxygen2: do not edit by hand

export(generatePreloadedSession)
export(getES)
export(getGDS)
export(getGSE)
export(read.gct)
export(reparseCachedESs)
export(servePhantasus)
export(write.gct)
import(Biobase)
import(GEOquery)
import(Rook)
import(ccaPP)
import(data.table)
import(ggplot2)
import(grid)
import(gtable)
import(htmltools)
import(httpuv)
import(jsonlite)
import(limma)
import(opencpu)
import(rhdf5)
import(stats)
import(svglite)
importFrom(AnnotationDbi,columns)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,loadDb)
importFrom(AnnotationDbi,mapIds)
importFrom(AnnotationDbi,species)
importFrom(fgsea,fgseaMultilevel)
importFrom(fgsea,plotEnrichment)
importFrom(ggplot2,ggtitle)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,svg)
importFrom(methods,new)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(utils,download.file)
importFrom(utils,getFromNamespace)
importFrom(utils,head)
importFrom(utils,object.size)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)
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