https://github.com/ctlab/quant3p
25 December 2019, 16:37:49 UTC
Revision 8520bcee727cb82bcad6565f95a315459941e588 authored by Alexey Sergushichev on 10 June 2016, 17:59:44 UTC, committed by Alexey Sergushichev on 10 June 2016, 19:26:46 UTC 
Saving temp bam file due to pybedtools regression
1 parent 9db7206
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Tip revision: 8520bcee727cb82bcad6565f95a315459941e588 authored by Alexey Sergushichev on 10 June 2016, 17:59:44 UTC
Saving temp bam file due to pybedtools regression
Tip revision: 8520bce
setup.py
from setuptools import setup

setup(name='quant3p',
      version='0.1',
      description='Tools to do 3\' RNA-seq quantification',
      url='http://github.com/ctlab/quant3p',
      author='Alexey Sergushichev',
      author_email='alserg@rain.ifmo.ru',
      license='Apache2',
      packages=['quant3p'],
      install_requires=[
          'HTSeq',
          'pysam',
          'pybedtools >= 0.6.9',
          'macs2 >= 2.1.0'
          ],
      scripts=['bin/macs2-stranded', 'bin/quant3p'],
      entry_points = {
          'console_scripts': [
              'fix-mm=quant3p.fixmm:main',
              'gtf-extend=quant3p.gtfextend:main'],
          },
      zip_safe=False)
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