https://github.com/ctlab/phantasus
Revision 893b1c8b754149acc000fe1666b340ecd11e0824 authored by Vladislav Kamenev on 13 August 2018, 09:40:50 UTC, committed by Vladislav Kamenev on 13 August 2018, 12:50:05 UTC
1 parent bc3f225
Tip revision: 893b1c8b754149acc000fe1666b340ecd11e0824 authored by Vladislav Kamenev on 13 August 2018, 09:40:50 UTC
Travis JS versioning implemented
Travis JS versioning implemented
Tip revision: 893b1c8
getGDS.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{getGDS}
\alias{getGDS}
\title{Load ExpressionSet from GEO Datasets}
\usage{
getGDS(name, destdir = tempdir(),
mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
}
\arguments{
\item{name}{String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.}
\item{destdir}{Directory for caching loaded Series and GPL
files from GEO database.}
\item{mirrorPath}{URL string which specifies the source of matrices.}
}
\value{
ExpressionSet object wrapped in list, that was available by given
in \code{name} variable GEO identifier.
}
\description{
\code{getGDS} return the ExpressionSet object corresponding
to GEO Dataset identifier.
}
\examples{
getGDS('GDS4922')
}
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