Revision 8ff1cbef5fdfd753d85c90a5c5b9c57f4936cdc0 authored by Ian Ferguson on 04 April 2013, 22:41:58 UTC, committed by Scott Smith on 05 April 2013, 15:02:59 UTC
Removed default reference sequence parameters from GMT/Varscan/CopyNumberParallel, CopySegmentParallel, QuickReadcounts, Readcounts, Somatic, SomaticParallel, SomaticParallelFilter, and SomaticParallelMerge. If the reference sequence was marked as is_optional => 1 in those classes, it is now marked as is_optional => 0. Changed the reference sequence parameters to is_optional => 0 in Consensus, NormalizeCopySegments, and SomaticMt (they had recently had their default reference sequence removed). Also reformatted class definitions for all modules under GMT/Varscan (added line breaks and fixed indentation for better consistency and readability).
1 parent c11ace8
| File | Mode | Size |
|---|---|---|
| filter_bqm_for_errors | -rwxr-xr-x | 335 bytes |
| genome | -rwxr-xr-x | 1.8 KB |
| genome-perl | l--------- | 15 bytes |
| genome-perl5.10 | l--------- | 13 bytes |
| genome-perl5.12 | l--------- | 19 bytes |
| genome-perl5.8 | l--------- | 18 bytes |
| genome-prove | l--------- | 16 bytes |
| genome-prove5.10 | l--------- | 14 bytes |
| genome-prove5.8 | l--------- | 14 bytes |
| genome-re.pl | l--------- | 16 bytes |
| genome-re.pl5.10 | l--------- | 14 bytes |
| genome-re.pl5.8 | l--------- | 14 bytes |
| genome5.10 | -rwxr-xr-x | 1.8 KB |
| genome5.10.1 | l--------- | 10 bytes |
| genome5.12 | -rwxr-xr-x | 1.9 KB |
| genome5.12.1 | l--------- | 10 bytes |
| gmt | -rwxr-xr-x | 2.0 KB |
| gmt5.10 | -rwxr-xr-x | 2.0 KB |
| gmt5.10.1 | l--------- | 7 bytes |
| gmt5.12 | -rwxr-xr-x | 2.0 KB |
| gmt5.12.1 | l--------- | 7 bytes |
| xgmt | -rwxr-xr-x | 3.3 KB |
Computing file changes ...
