https://github.com/AllenInstitute/patchseqtools
Revision 933532c2838b0844cfd90130f01e340b61bee457 authored by jeremymiller on 27 September 2018, 16:16:16 UTC, committed by jeremymiller on 27 September 2018, 16:16:16 UTC
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Tip revision: 933532c2838b0844cfd90130f01e340b61bee457 authored by jeremymiller on 27 September 2018, 16:16:16 UTC
Update stuff to match style guide.
Update stuff to match style guide.
Tip revision: 933532c
README.md
# patchseqtools
R functions for gene selection and analysis of patch-seq data.
patchseqtools includes many functions that are used for QC and cell typing of patch-seq cells.
Specific topics include:
1) Assigning quality scores to each cell (mostly wrapper functions for https://github.com/PavlidisLab/patchSeqQC)
2) Cell type mapping using tree mapping strategy (to be added later)
3) Cell type clustering using CCA (mostly wrapper functions for https://satijalab.org/seurat/Seurat_AlignmentTutorial.html)
License: What license is it under?
Install using:
```
devtools::install_github("AllenInstitute/patchseqtools",auth_token="802976690281f1483c40de46d0a07e9d01a3de08")
```
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