https://github.com/splatlab/squeakr
Revision 97e1d99c0a1a26603435efe9792eabc81fc72e5b authored by Rob Johnson on 31 July 2018, 23:05:09 UTC, committed by Rob Johnson on 31 July 2018, 23:05:09 UTC
1 parent 9845a02
Tip revision: 97e1d99c0a1a26603435efe9792eabc81fc72e5b authored by Rob Johnson on 31 July 2018, 23:05:09 UTC
todo
todo
Tip revision: 97e1d99
todo.txt
count:
- kill -p
- change -o to output file
- make -o required
- add argument:
<-e | -p num_hash_bits>
query:
- make -o optional (default to stdout)
- make -q optional (default to stdin)
inner_prod:
- remove -a -b
list:
- make -o optional (default to stdout)
- add a cutoff parameter
new command: merge
merge <-e | -p num_hash_bits> [-c cutoff] [-n] -o <output.squeakr> <infile1.squeakr> ...
new command: filter
(same as merge, but only one input -- internally just runs merge)
new command: info
info <input.squeakr>
- outputs:
- kmer size
- version
- exactness or num hash bits
- number of kmers
- number of distinct kmers
- cutoff
- whether counts are present
- etc?
make squeakrconfig packed
Computing file changes ...
