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https://github.com/fenderglass/Ragout
22 June 2021, 01:28:21 UTC
Revision a52dcb8cf52d157890f1dd9727f7af833576665a authored by fenderglass on 04 January 2014, 11:30:48 UTC, committed by fenderglass on 04 January 2014, 11:30:48 UTC 
more accurate handling of known adjacencies
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Tip revision: a52dcb8cf52d157890f1dd9727f7af833576665a authored by fenderglass on 04 January 2014, 11:30:48 UTC
more accurate handling of known adjacencies
Tip revision: a52dcb8
INSTALL.md 
Installation instructions for Ragout
====================================

Ragout is written in python and requires version 2.7 to run.
Also, there are third-party dependencies:

* biopython [http://biopython.org]
* networkx [http://networkx.github.io]

You can install them with your OS-specific package manager,
e.g. in Ubuntu:

	$ sudo apt-get install python-biopython python-networkx

or using pip package manager:

	$ pip install biopython networkx

Ragout can use Sibelia for the genomes decomposition on synteny blocks.
"Sibelia" executable should be in your "PATH" environment variable,
otherwise you can edit "SIBELIA_BIN" variable in "ragout.py" file. 

If you use Python 2.5 or 2.6, you need to install additional Python
packages:

* argparse [https://pypi.python.org/pypi/argparse]
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