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https://github.com/fenderglass/Ragout
05 April 2024, 18:02:14 UTC
Revision b3bf289efa8c96c1e1815f811520642f70150519 authored by Mikhail Kolmogorov on 17 February 2016, 19:29:27 UTC, committed by Mikhail Kolmogorov on 17 February 2016, 19:29:27 UTC 
Merge branch 'master' into devel
2 parent s 024d279 + f95ea61
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Tip revision: b3bf289efa8c96c1e1815f811520642f70150519 authored by Mikhail Kolmogorov on 17 February 2016, 19:29:27 UTC
Merge branch 'master' into devel
Tip revision: b3bf289
Makefile 
OVLP_DIR := ragout/overlap/cpp_impl
M2S_DIR := ragout/maf2synteny/cpp_impl
BIN_DIR := $(shell pwd)/lib

#setting compiler (if not set)
ifeq (${CXX},)
	IS_CLANG := $(shell which clang++ >/dev/null 2>&1; echo $$?)
	IS_GCC := $(shell which g++ >/dev/null 2>&1; echo $$?)

	ifeq (${IS_CLANG},0)
		CXX := clang++
		
	else ifeq (${IS_GCC},0)
		CXX := g++

	else
	err:
		$(error Neither gcc nor clang compilers were detected.)
	endif
endif

#adding necessary flags
CXXFLAGS += -std=c++0x
UNAME := $(shell uname -s)
ifeq ($(UNAME),Darwin)
	CXXFLAGS += -stdlib=libc++
	LDFLAGS += -lc++
endif

export CXX
export CXXFLAGS
export LDFLAGS
export BIN_DIR

.PHONY: all overlap dependencies clean maf2synteny test

all: overlap maf2synteny

static: LDFLAGS += -static-libstdc++ -static-libgcc -static
static: all

overlap:
	make -C ${OVLP_DIR} all

maf2synteny:
	make -C ${M2S_DIR} all

dependencies:
	scripts/install-sibelia.py

test:
	scripts/run-tests.py

clean:
	make -C ${OVLP_DIR} clean
	make -C ${M2S_DIR} clean
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